Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT2G25830

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0006428: isoleucyl-tRNA aminoacylation0.00E+00
2GO:0042407: cristae formation0.00E+00
3GO:0005996: monosaccharide metabolic process0.00E+00
4GO:0007638: mechanosensory behavior0.00E+00
5GO:0070272: proton-transporting ATP synthase complex biogenesis0.00E+00
6GO:0006573: valine metabolic process0.00E+00
7GO:0015882: L-ascorbic acid transport0.00E+00
8GO:0006437: tyrosyl-tRNA aminoacylation0.00E+00
9GO:0070125: mitochondrial translational elongation0.00E+00
10GO:0009658: chloroplast organization4.08E-08
11GO:0010020: chloroplast fission1.02E-07
12GO:0019253: reductive pentose-phosphate cycle1.02E-07
13GO:0032544: plastid translation3.88E-07
14GO:0042026: protein refolding7.00E-06
15GO:0043572: plastid fission5.54E-05
16GO:0018119: peptidyl-cysteine S-nitrosylation7.04E-05
17GO:0006546: glycine catabolic process9.74E-05
18GO:0019464: glycine decarboxylation via glycine cleavage system9.74E-05
19GO:0046686: response to cadmium ion1.56E-04
20GO:0009735: response to cytokinin1.94E-04
21GO:0061077: chaperone-mediated protein folding2.70E-04
22GO:0006458: 'de novo' protein folding2.91E-04
23GO:1901259: chloroplast rRNA processing2.91E-04
24GO:0006551: leucine metabolic process4.05E-04
25GO:0010028: xanthophyll cycle4.05E-04
26GO:0016117: carotenoid biosynthetic process4.28E-04
27GO:0008610: lipid biosynthetic process4.71E-04
28GO:0009657: plastid organization5.75E-04
29GO:0045454: cell redox homeostasis6.63E-04
30GO:0006695: cholesterol biosynthetic process8.76E-04
31GO:1902326: positive regulation of chlorophyll biosynthetic process8.76E-04
32GO:0010069: zygote asymmetric cytokinesis in embryo sac8.76E-04
33GO:0006423: cysteinyl-tRNA aminoacylation8.76E-04
34GO:1904143: positive regulation of carotenoid biosynthetic process8.76E-04
35GO:0030388: fructose 1,6-bisphosphate metabolic process8.76E-04
36GO:2000123: positive regulation of stomatal complex development8.76E-04
37GO:0010270: photosystem II oxygen evolving complex assembly8.76E-04
38GO:0010424: DNA methylation on cytosine within a CG sequence8.76E-04
39GO:0010275: NAD(P)H dehydrogenase complex assembly8.76E-04
40GO:0043039: tRNA aminoacylation8.76E-04
41GO:0009409: response to cold1.01E-03
42GO:0009773: photosynthetic electron transport in photosystem I1.09E-03
43GO:0006415: translational termination1.09E-03
44GO:0042742: defense response to bacterium1.41E-03
45GO:0009767: photosynthetic electron transport chain1.41E-03
46GO:0006000: fructose metabolic process1.42E-03
47GO:0006518: peptide metabolic process1.42E-03
48GO:0010581: regulation of starch biosynthetic process1.42E-03
49GO:0071492: cellular response to UV-A1.42E-03
50GO:0006696: ergosterol biosynthetic process1.42E-03
51GO:0006065: UDP-glucuronate biosynthetic process1.42E-03
52GO:0006457: protein folding1.60E-03
53GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway2.04E-03
54GO:0016051: carbohydrate biosynthetic process2.05E-03
55GO:0009853: photorespiration2.05E-03
56GO:0006241: CTP biosynthetic process2.06E-03
57GO:0009052: pentose-phosphate shunt, non-oxidative branch2.06E-03
58GO:0033014: tetrapyrrole biosynthetic process2.06E-03
59GO:0006165: nucleoside diphosphate phosphorylation2.06E-03
60GO:0006228: UTP biosynthetic process2.06E-03
61GO:0016556: mRNA modification2.06E-03
62GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly2.06E-03
63GO:0007231: osmosensory signaling pathway2.06E-03
64GO:0051085: chaperone mediated protein folding requiring cofactor2.06E-03
65GO:0010239: chloroplast mRNA processing2.06E-03
66GO:0019344: cysteine biosynthetic process2.20E-03
67GO:0006418: tRNA aminoacylation for protein translation2.43E-03
68GO:0007017: microtubule-based process2.43E-03
69GO:0015979: photosynthesis2.43E-03
70GO:0045727: positive regulation of translation2.76E-03
71GO:0033500: carbohydrate homeostasis2.76E-03
72GO:2000038: regulation of stomatal complex development2.76E-03
73GO:0009902: chloroplast relocation2.76E-03
74GO:0006542: glutamine biosynthetic process2.76E-03
75GO:0006808: regulation of nitrogen utilization2.76E-03
76GO:0019676: ammonia assimilation cycle2.76E-03
77GO:0071486: cellular response to high light intensity2.76E-03
78GO:0009765: photosynthesis, light harvesting2.76E-03
79GO:0006183: GTP biosynthetic process2.76E-03
80GO:0006730: one-carbon metabolic process2.93E-03
81GO:0007005: mitochondrion organization2.93E-03
82GO:0009294: DNA mediated transformation3.19E-03
83GO:0009831: plant-type cell wall modification involved in multidimensional cell growth3.19E-03
84GO:0010375: stomatal complex patterning3.54E-03
85GO:0016120: carotene biosynthetic process3.54E-03
86GO:0010236: plastoquinone biosynthetic process3.54E-03
87GO:0016123: xanthophyll biosynthetic process3.54E-03
88GO:0006810: transport3.55E-03
89GO:0000271: polysaccharide biosynthetic process4.07E-03
90GO:0016554: cytidine to uridine editing4.38E-03
91GO:0006796: phosphate-containing compound metabolic process4.38E-03
92GO:0045489: pectin biosynthetic process4.38E-03
93GO:0010190: cytochrome b6f complex assembly4.38E-03
94GO:0006555: methionine metabolic process4.38E-03
95GO:0006096: glycolytic process5.15E-03
96GO:0009082: branched-chain amino acid biosynthetic process5.27E-03
97GO:0009094: L-phenylalanine biosynthetic process5.27E-03
98GO:0009099: valine biosynthetic process5.27E-03
99GO:0009854: oxidative photosynthetic carbon pathway5.27E-03
100GO:0010555: response to mannitol5.27E-03
101GO:0009955: adaxial/abaxial pattern specification5.27E-03
102GO:0009828: plant-type cell wall loosening6.57E-03
103GO:0009642: response to light intensity7.25E-03
104GO:0000105: histidine biosynthetic process7.25E-03
105GO:0007155: cell adhesion7.25E-03
106GO:0010027: thylakoid membrane organization7.85E-03
107GO:0019430: removal of superoxide radicals8.32E-03
108GO:0048193: Golgi vesicle transport8.32E-03
109GO:0009097: isoleucine biosynthetic process8.32E-03
110GO:0006002: fructose 6-phosphate metabolic process8.32E-03
111GO:0055114: oxidation-reduction process8.62E-03
112GO:0010206: photosystem II repair9.45E-03
113GO:0045337: farnesyl diphosphate biosynthetic process9.45E-03
114GO:0033384: geranyl diphosphate biosynthetic process9.45E-03
115GO:0006783: heme biosynthetic process9.45E-03
116GO:0006754: ATP biosynthetic process9.45E-03
117GO:0048589: developmental growth9.45E-03
118GO:0098656: anion transmembrane transport9.45E-03
119GO:0009817: defense response to fungus, incompatible interaction1.03E-02
120GO:0018298: protein-chromophore linkage1.03E-02
121GO:0009793: embryo development ending in seed dormancy1.03E-02
122GO:0009416: response to light stimulus1.04E-02
123GO:0006349: regulation of gene expression by genetic imprinting1.06E-02
124GO:1900865: chloroplast RNA modification1.06E-02
125GO:0010380: regulation of chlorophyll biosynthetic process1.06E-02
126GO:0043067: regulation of programmed cell death1.06E-02
127GO:0006779: porphyrin-containing compound biosynthetic process1.06E-02
128GO:0035999: tetrahydrofolate interconversion1.06E-02
129GO:0006535: cysteine biosynthetic process from serine1.19E-02
130GO:0045036: protein targeting to chloroplast1.19E-02
131GO:0006949: syncytium formation1.19E-02
132GO:0009637: response to blue light1.30E-02
133GO:0019684: photosynthesis, light reaction1.31E-02
134GO:0006816: calcium ion transport1.31E-02
135GO:0043085: positive regulation of catalytic activity1.31E-02
136GO:0000272: polysaccharide catabolic process1.31E-02
137GO:0045490: pectin catabolic process1.31E-02
138GO:0010216: maintenance of DNA methylation1.31E-02
139GO:0045037: protein import into chloroplast stroma1.45E-02
140GO:0006631: fatty acid metabolic process1.55E-02
141GO:0006006: glucose metabolic process1.58E-02
142GO:0050826: response to freezing1.58E-02
143GO:0006094: gluconeogenesis1.58E-02
144GO:0005986: sucrose biosynthetic process1.58E-02
145GO:0008152: metabolic process1.62E-02
146GO:0009744: response to sucrose1.69E-02
147GO:0010207: photosystem II assembly1.73E-02
148GO:0090351: seedling development1.87E-02
149GO:0070588: calcium ion transmembrane transport1.87E-02
150GO:0009664: plant-type cell wall organization2.12E-02
151GO:0007010: cytoskeleton organization2.18E-02
152GO:0006364: rRNA processing2.28E-02
153GO:0009768: photosynthesis, light harvesting in photosystem I2.33E-02
154GO:0080092: regulation of pollen tube growth2.66E-02
155GO:0009411: response to UV2.83E-02
156GO:0006284: base-excision repair3.01E-02
157GO:0000413: protein peptidyl-prolyl isomerization3.37E-02
158GO:0042631: cellular response to water deprivation3.37E-02
159GO:0009742: brassinosteroid mediated signaling pathway3.43E-02
160GO:0010197: polar nucleus fusion3.55E-02
161GO:0009741: response to brassinosteroid3.55E-02
162GO:0007018: microtubule-based movement3.74E-02
163GO:0009646: response to absence of light3.74E-02
164GO:0019252: starch biosynthetic process3.93E-02
165GO:0071554: cell wall organization or biogenesis4.12E-02
166GO:0010583: response to cyclopentenone4.32E-02
167GO:0016032: viral process4.32E-02
168GO:0032502: developmental process4.32E-02
169GO:0007264: small GTPase mediated signal transduction4.32E-02
170GO:0009790: embryo development4.72E-02
171GO:0007267: cell-cell signaling4.93E-02
RankGO TermAdjusted P value
1GO:0008887: glycerate kinase activity0.00E+00
2GO:0004635: phosphoribosyl-AMP cyclohydrolase activity0.00E+00
3GO:0008962: phosphatidylglycerophosphatase activity0.00E+00
4GO:0050613: delta14-sterol reductase activity0.00E+00
5GO:0050278: sedoheptulose-bisphosphatase activity0.00E+00
6GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity0.00E+00
7GO:0015229: L-ascorbic acid transporter activity0.00E+00
8GO:0045435: lycopene epsilon cyclase activity0.00E+00
9GO:0004822: isoleucine-tRNA ligase activity0.00E+00
10GO:0046905: phytoene synthase activity0.00E+00
11GO:0004636: phosphoribosyl-ATP diphosphatase activity0.00E+00
12GO:0016767: geranylgeranyl-diphosphate geranylgeranyltransferase activity0.00E+00
13GO:0009974: zeinoxanthin epsilon hydroxylase activity0.00E+00
14GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity0.00E+00
15GO:0047450: crotonoyl-[acyl-carrier-protein] hydratase activity0.00E+00
16GO:0051920: peroxiredoxin activity6.52E-08
17GO:0016209: antioxidant activity2.30E-07
18GO:0051082: unfolded protein binding2.12E-06
19GO:0019843: rRNA binding4.54E-06
20GO:0003755: peptidyl-prolyl cis-trans isomerase activity6.44E-06
21GO:0004618: phosphoglycerate kinase activity7.32E-06
22GO:0004148: dihydrolipoyl dehydrogenase activity2.54E-05
23GO:0016149: translation release factor activity, codon specific5.54E-05
24GO:0004375: glycine dehydrogenase (decarboxylating) activity5.54E-05
25GO:0044183: protein binding involved in protein folding7.04E-05
26GO:0031072: heat shock protein binding1.06E-04
27GO:0005528: FK506 binding2.06E-04
28GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity2.91E-04
29GO:0004831: tyrosine-tRNA ligase activity4.05E-04
30GO:0003984: acetolactate synthase activity4.05E-04
31GO:0004489: methylenetetrahydrofolate reductase (NAD(P)H) activity4.05E-04
32GO:0004325: ferrochelatase activity4.05E-04
33GO:0051996: squalene synthase activity4.05E-04
34GO:0047259: glucomannan 4-beta-mannosyltransferase activity4.05E-04
35GO:0004560: alpha-L-fucosidase activity4.05E-04
36GO:0003747: translation release factor activity6.89E-04
37GO:0019171: 3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity8.76E-04
38GO:0008825: cyclopropane-fatty-acyl-phospholipid synthase activity8.76E-04
39GO:0004310: farnesyl-diphosphate farnesyltransferase activity8.76E-04
40GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity8.76E-04
41GO:0050017: L-3-cyanoalanine synthase activity8.76E-04
42GO:0010297: heteropolysaccharide binding8.76E-04
43GO:0004326: tetrahydrofolylpolyglutamate synthase activity8.76E-04
44GO:0004047: aminomethyltransferase activity8.76E-04
45GO:0004817: cysteine-tRNA ligase activity8.76E-04
46GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity8.76E-04
47GO:0016597: amino acid binding1.01E-03
48GO:0005504: fatty acid binding1.42E-03
49GO:0017150: tRNA dihydrouridine synthase activity1.42E-03
50GO:0003913: DNA photolyase activity1.42E-03
51GO:0002161: aminoacyl-tRNA editing activity1.42E-03
52GO:0004751: ribose-5-phosphate isomerase activity1.42E-03
53GO:0030267: glyoxylate reductase (NADP) activity1.42E-03
54GO:0003979: UDP-glucose 6-dehydrogenase activity1.42E-03
55GO:0003746: translation elongation factor activity2.05E-03
56GO:0004550: nucleoside diphosphate kinase activity2.06E-03
57GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor2.06E-03
58GO:0004365: glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity2.06E-03
59GO:0045430: chalcone isomerase activity2.76E-03
60GO:0004607: phosphatidylcholine-sterol O-acyltransferase activity2.76E-03
61GO:0047769: arogenate dehydratase activity2.76E-03
62GO:0004664: prephenate dehydratase activity2.76E-03
63GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor2.76E-03
64GO:0008574: ATP-dependent microtubule motor activity, plus-end-directed2.76E-03
65GO:0004045: aminoacyl-tRNA hydrolase activity2.76E-03
66GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity2.93E-03
67GO:0030570: pectate lyase activity3.19E-03
68GO:0005198: structural molecule activity3.30E-03
69GO:0030414: peptidase inhibitor activity3.54E-03
70GO:0016773: phosphotransferase activity, alcohol group as acceptor3.54E-03
71GO:0004356: glutamate-ammonia ligase activity3.54E-03
72GO:0008725: DNA-3-methyladenine glycosylase activity3.54E-03
73GO:0008374: O-acyltransferase activity3.54E-03
74GO:0004812: aminoacyl-tRNA ligase activity3.76E-03
75GO:0003924: GTPase activity3.82E-03
76GO:0016462: pyrophosphatase activity4.38E-03
77GO:0042578: phosphoric ester hydrolase activity4.38E-03
78GO:0080030: methyl indole-3-acetate esterase activity4.38E-03
79GO:0050662: coenzyme binding4.71E-03
80GO:0051753: mannan synthase activity5.27E-03
81GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity5.27E-03
82GO:0102391: decanoate--CoA ligase activity5.27E-03
83GO:0003886: DNA (cytosine-5-)-methyltransferase activity5.27E-03
84GO:0004124: cysteine synthase activity5.27E-03
85GO:0004601: peroxidase activity5.60E-03
86GO:0009881: photoreceptor activity6.23E-03
87GO:0004467: long-chain fatty acid-CoA ligase activity6.23E-03
88GO:0016831: carboxy-lyase activity6.23E-03
89GO:0004427: inorganic diphosphatase activity6.23E-03
90GO:0005200: structural constituent of cytoskeleton6.98E-03
91GO:0004033: aldo-keto reductase (NADP) activity7.25E-03
92GO:0016168: chlorophyll binding8.30E-03
93GO:0005525: GTP binding8.33E-03
94GO:0016758: transferase activity, transferring hexosyl groups8.40E-03
95GO:0008553: hydrogen-exporting ATPase activity, phosphorylative mechanism9.45E-03
96GO:0004337: geranyltranstransferase activity9.45E-03
97GO:0008236: serine-type peptidase activity9.75E-03
98GO:0004222: metalloendopeptidase activity1.13E-02
99GO:0008047: enzyme activator activity1.19E-02
100GO:0005089: Rho guanyl-nucleotide exchange factor activity1.31E-02
101GO:0004161: dimethylallyltranstransferase activity1.31E-02
102GO:0000049: tRNA binding1.45E-02
103GO:0004565: beta-galactosidase activity1.58E-02
104GO:0005315: inorganic phosphate transmembrane transporter activity1.58E-02
105GO:0005262: calcium channel activity1.58E-02
106GO:0003735: structural constituent of ribosome1.86E-02
107GO:0031409: pigment binding2.02E-02
108GO:0051287: NAD binding2.04E-02
109GO:0004857: enzyme inhibitor activity2.18E-02
110GO:0005524: ATP binding2.19E-02
111GO:0004176: ATP-dependent peptidase activity2.50E-02
112GO:0016887: ATPase activity2.70E-02
113GO:0022891: substrate-specific transmembrane transporter activity2.83E-02
114GO:0003756: protein disulfide isomerase activity3.01E-02
115GO:0008514: organic anion transmembrane transporter activity3.01E-02
116GO:0004791: thioredoxin-disulfide reductase activity3.74E-02
117GO:0019901: protein kinase binding3.93E-02
118GO:0048038: quinone binding4.12E-02
119GO:0016829: lyase activity4.38E-02
120GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor4.52E-02
121GO:0008483: transaminase activity4.93E-02
122GO:0016722: oxidoreductase activity, oxidizing metal ions4.93E-02
123GO:0008237: metallopeptidase activity4.93E-02
RankGO TermAdjusted P value
1GO:0009344: nitrite reductase complex [NAD(P)H]0.00E+00
2GO:0005948: acetolactate synthase complex0.00E+00
3GO:0009571: proplastid stroma0.00E+00
4GO:0009507: chloroplast4.98E-49
5GO:0009570: chloroplast stroma4.43E-39
6GO:0009941: chloroplast envelope1.10E-30
7GO:0009535: chloroplast thylakoid membrane2.06E-20
8GO:0009579: thylakoid1.12E-15
9GO:0009543: chloroplast thylakoid lumen1.82E-12
10GO:0010319: stromule7.94E-09
11GO:0048046: apoplast3.34E-07
12GO:0009534: chloroplast thylakoid3.70E-07
13GO:0031977: thylakoid lumen3.18E-06
14GO:0009654: photosystem II oxygen evolving complex1.26E-05
15GO:0009706: chloroplast inner membrane2.64E-05
16GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)3.25E-05
17GO:0005960: glycine cleavage complex5.54E-05
18GO:0030095: chloroplast photosystem II1.28E-04
19GO:0019898: extrinsic component of membrane6.28E-04
20GO:0009536: plastid7.85E-04
21GO:0000427: plastid-encoded plastid RNA polymerase complex8.76E-04
22GO:0000311: plastid large ribosomal subunit1.24E-03
23GO:0005853: eukaryotic translation elongation factor 1 complex1.42E-03
24GO:0010287: plastoglobule1.62E-03
25GO:0031969: chloroplast membrane1.92E-03
26GO:0009505: plant-type cell wall2.43E-03
27GO:0009532: plastid stroma2.67E-03
28GO:0022626: cytosolic ribosome2.87E-03
29GO:0055035: plastid thylakoid membrane3.54E-03
30GO:0010168: ER body4.38E-03
31GO:0009533: chloroplast stromal thylakoid6.23E-03
32GO:0005618: cell wall6.63E-03
33GO:0005874: microtubule7.37E-03
34GO:0031225: anchored component of membrane7.51E-03
35GO:0009539: photosystem II reaction center8.32E-03
36GO:0045298: tubulin complex9.45E-03
37GO:0005763: mitochondrial small ribosomal subunit9.45E-03
38GO:0005759: mitochondrial matrix1.16E-02
39GO:0016324: apical plasma membrane1.19E-02
40GO:0009508: plastid chromosome1.58E-02
41GO:0000312: plastid small ribosomal subunit1.73E-02
42GO:0030176: integral component of endoplasmic reticulum membrane1.87E-02
43GO:0030076: light-harvesting complex1.87E-02
44GO:0005856: cytoskeleton1.90E-02
45GO:0005875: microtubule associated complex2.02E-02
46GO:0042651: thylakoid membrane2.33E-02
47GO:0005871: kinesin complex3.19E-02
48GO:0005840: ribosome3.73E-02
49GO:0009522: photosystem I3.74E-02
50GO:0009523: photosystem II3.93E-02
51GO:0016020: membrane4.05E-02
52GO:0005623: cell4.16E-02
53GO:0009295: nucleoid4.93E-02
54GO:0005778: peroxisomal membrane4.93E-02
Gene type



Gene DE type