co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT2G25080

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0015970: guanosine tetraphosphate biosynthetic process	0.00E+00
2	GO:0046677: response to antibiotic	0.00E+00
3	GO:0090279: regulation of calcium ion import	0.00E+00
4	GO:0015717: triose phosphate transport	0.00E+00
5	GO:0071474: cellular hyperosmotic response	0.00E+00
6	GO:0070584: mitochondrion morphogenesis	0.00E+00
7	GO:1901401: regulation of tetrapyrrole metabolic process	0.00E+00
8	GO:0015979: photosynthesis	9.29E-13
9	GO:0009768: photosynthesis, light harvesting in photosystem I	2.05E-11
10	GO:0018298: protein-chromophore linkage	1.56E-07
11	GO:0009645: response to low light intensity stimulus	4.62E-07
12	GO:0010114: response to red light	6.02E-07
13	GO:0015995: chlorophyll biosynthetic process	5.08E-06
14	GO:0010218: response to far red light	7.83E-06
15	GO:0009637: response to blue light	1.05E-05
16	GO:0009765: photosynthesis, light harvesting	1.12E-05
17	GO:0006824: cobalt ion transport	1.14E-04
18	GO:0018002: N-terminal peptidyl-glutamic acid acetylation	1.14E-04
19	GO:0006475: internal protein amino acid acetylation	1.14E-04
20	GO:0006474: N-terminal protein amino acid acetylation	1.14E-04
21	GO:0017198: N-terminal peptidyl-serine acetylation	1.14E-04
22	GO:0071712: ER-associated misfolded protein catabolic process	2.65E-04
23	GO:0051262: protein tetramerization	2.65E-04
24	GO:0032527: protein exit from endoplasmic reticulum	2.65E-04
25	GO:0034755: iron ion transmembrane transport	2.65E-04
26	GO:0071497: cellular response to freezing	2.65E-04
27	GO:0090342: regulation of cell aging	2.65E-04
28	GO:0050992: dimethylallyl diphosphate biosynthetic process	2.65E-04
29	GO:0009644: response to high light intensity	3.19E-04
30	GO:0032940: secretion by cell	4.38E-04
31	GO:0035436: triose phosphate transmembrane transport	4.38E-04
32	GO:0010600: regulation of auxin biosynthetic process	8.35E-04
33	GO:0051205: protein insertion into membrane	8.35E-04
34	GO:0015713: phosphoglycerate transport	8.35E-04
35	GO:0042938: dipeptide transport	8.35E-04
36	GO:1901141: regulation of lignin biosynthetic process	8.35E-04
37	GO:0016123: xanthophyll biosynthetic process	1.05E-03
38	GO:0045038: protein import into chloroplast thylakoid membrane	1.05E-03
39	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	1.29E-03
40	GO:0009643: photosynthetic acclimation	1.29E-03
41	GO:0042549: photosystem II stabilization	1.29E-03
42	GO:0071470: cellular response to osmotic stress	1.54E-03
43	GO:0010244: response to low fluence blue light stimulus by blue low-fluence system	1.54E-03
44	GO:0010196: nonphotochemical quenching	1.81E-03
45	GO:0009769: photosynthesis, light harvesting in photosystem II	1.81E-03
46	GO:0010161: red light signaling pathway	1.81E-03
47	GO:0010928: regulation of auxin mediated signaling pathway	2.09E-03
48	GO:0009642: response to light intensity	2.09E-03
49	GO:0009704: de-etiolation	2.09E-03
50	GO:0034599: cellular response to oxidative stress	2.23E-03
51	GO:0010099: regulation of photomorphogenesis	2.39E-03
52	GO:0007186: G-protein coupled receptor signaling pathway	2.39E-03
53	GO:0048507: meristem development	2.70E-03
54	GO:0010206: photosystem II repair	2.70E-03
55	GO:0090333: regulation of stomatal closure	2.70E-03
56	GO:0009723: response to ethylene	2.71E-03
57	GO:0009640: photomorphogenesis	2.74E-03
58	GO:0042761: very long-chain fatty acid biosynthetic process	3.02E-03
59	GO:0009688: abscisic acid biosynthetic process	3.36E-03
60	GO:0009641: shade avoidance	3.36E-03
61	GO:0009698: phenylpropanoid metabolic process	3.71E-03
62	GO:0043085: positive regulation of catalytic activity	3.71E-03
63	GO:0030148: sphingolipid biosynthetic process	3.71E-03
64	GO:0045454: cell redox homeostasis	3.72E-03
65	GO:0015706: nitrate transport	4.06E-03
66	GO:0043086: negative regulation of catalytic activity	4.34E-03
67	GO:0009767: photosynthetic electron transport chain	4.43E-03
68	GO:0018107: peptidyl-threonine phosphorylation	4.43E-03
69	GO:0009718: anthocyanin-containing compound biosynthetic process	4.43E-03
70	GO:0055114: oxidation-reduction process	4.59E-03
71	GO:0010207: photosystem II assembly	4.81E-03
72	GO:0009624: response to nematode	5.21E-03
73	GO:0034976: response to endoplasmic reticulum stress	5.61E-03
74	GO:0006636: unsaturated fatty acid biosynthetic process	5.61E-03
75	GO:0006289: nucleotide-excision repair	6.03E-03
76	GO:0006874: cellular calcium ion homeostasis	6.45E-03
77	GO:0061077: chaperone-mediated protein folding	6.89E-03
78	GO:0009269: response to desiccation	6.89E-03
79	GO:0010017: red or far-red light signaling pathway	7.34E-03
80	GO:0070417: cellular response to cold	8.74E-03
81	GO:0009735: response to cytokinin	8.97E-03
82	GO:0009409: response to cold	9.67E-03
83	GO:0009741: response to brassinosteroid	9.73E-03
84	GO:0010305: leaf vascular tissue pattern formation	9.73E-03
85	GO:0006662: glycerol ether metabolic process	9.73E-03
86	GO:0010182: sugar mediated signaling pathway	9.73E-03
87	GO:0009416: response to light stimulus	1.01E-02
88	GO:0006814: sodium ion transport	1.02E-02
89	GO:0048510: regulation of timing of transition from vegetative to reproductive phase	1.13E-02
90	GO:0010193: response to ozone	1.13E-02
91	GO:0009658: chloroplast organization	1.40E-02
92	GO:0016126: sterol biosynthetic process	1.46E-02
93	GO:0010027: thylakoid membrane organization	1.46E-02
94	GO:0006970: response to osmotic stress	1.51E-02
95	GO:0016311: dephosphorylation	1.70E-02
96	GO:0044550: secondary metabolite biosynthetic process	1.89E-02
97	GO:0006811: ion transport	1.89E-02
98	GO:0009910: negative regulation of flower development	1.96E-02
99	GO:0009631: cold acclimation	1.96E-02
100	GO:0007568: aging	1.96E-02
101	GO:0006865: amino acid transport	2.02E-02
102	GO:0051707: response to other organism	2.50E-02
103	GO:0006629: lipid metabolic process	2.56E-02
104	GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process	2.87E-02
105	GO:0006812: cation transport	2.94E-02
106	GO:0009585: red, far-red light phototransduction	3.09E-02
107	GO:0010224: response to UV-B	3.17E-02
108	GO:0006857: oligopeptide transport	3.25E-02
109	GO:0006508: proteolysis	3.28E-02
110	GO:0009740: gibberellic acid mediated signaling pathway	3.81E-02
111	GO:0018105: peptidyl-serine phosphorylation	4.06E-02
112	GO:0009742: brassinosteroid mediated signaling pathway	4.14E-02
113	GO:0009611: response to wounding	4.63E-02
114	GO:0009845: seed germination	4.93E-02

Rank	GO Term	Adjusted P value
1	GO:0009540: zeaxanthin epoxidase [overall] activity	0.00E+00
2	GO:0030504: inorganic diphosphate transmembrane transporter activity	0.00E+00
3	GO:0016754: sinapoylglucose-malate O-sinapoyltransferase activity	0.00E+00
4	GO:0051745: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase activity	0.00E+00
5	GO:0015038: glutathione disulfide oxidoreductase activity	0.00E+00
6	GO:0048529: magnesium-protoporphyrin IX monomethyl ester (oxidative) cyclase activity	0.00E+00
7	GO:0031409: pigment binding	1.37E-09
8	GO:0016168: chlorophyll binding	8.69E-08
9	GO:0004462: lactoylglutathione lyase activity	2.79E-05
10	GO:0005227: calcium activated cation channel activity	1.14E-04
11	GO:1990189: peptide-serine-N-acetyltransferase activity	1.14E-04
12	GO:1990190: peptide-glutamate-N-acetyltransferase activity	1.14E-04
13	GO:0052631: sphingolipid delta-8 desaturase activity	1.14E-04
14	GO:0046429: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity	1.14E-04
15	GO:0022821: potassium ion antiporter activity	2.65E-04
16	GO:0047158: sinapoylglucose-sinapoylglucose O-sinapoyltransferase activity	2.65E-04
17	GO:0016630: protochlorophyllide reductase activity	2.65E-04
18	GO:0019172: glyoxalase III activity	2.65E-04
19	GO:0008728: GTP diphosphokinase activity	2.65E-04
20	GO:0044390: ubiquitin-like protein conjugating enzyme binding	2.65E-04
21	GO:0016868: intramolecular transferase activity, phosphotransferases	2.65E-04
22	GO:0004180: carboxypeptidase activity	4.38E-04
23	GO:0010277: chlorophyllide a oxygenase [overall] activity	4.38E-04
24	GO:0016805: dipeptidase activity	4.38E-04
25	GO:0071917: triose-phosphate transmembrane transporter activity	4.38E-04
26	GO:0042936: dipeptide transporter activity	8.35E-04
27	GO:0004506: squalene monooxygenase activity	8.35E-04
28	GO:0004930: G-protein coupled receptor activity	8.35E-04
29	GO:0070628: proteasome binding	8.35E-04
30	GO:1904264: ubiquitin protein ligase activity involved in ERAD pathway	8.35E-04
31	GO:0015120: phosphoglycerate transmembrane transporter activity	8.35E-04
32	GO:0051538: 3 iron, 4 sulfur cluster binding	1.05E-03
33	GO:0031593: polyubiquitin binding	1.29E-03
34	GO:0005261: cation channel activity	1.54E-03
35	GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water	2.39E-03
36	GO:0071949: FAD binding	2.70E-03
37	GO:0000989: transcription factor activity, transcription factor binding	2.70E-03
38	GO:0051537: 2 iron, 2 sulfur cluster binding	2.96E-03
39	GO:0005381: iron ion transmembrane transporter activity	3.02E-03
40	GO:0046872: metal ion binding	3.28E-03
41	GO:0016308: 1-phosphatidylinositol-4-phosphate 5-kinase activity	3.36E-03
42	GO:0008047: enzyme activator activity	3.36E-03
43	GO:0004864: protein phosphatase inhibitor activity	3.36E-03
44	GO:0044183: protein binding involved in protein folding	3.71E-03
45	GO:0047372: acylglycerol lipase activity	3.71E-03
46	GO:0004022: alcohol dehydrogenase (NAD) activity	4.43E-03
47	GO:0005315: inorganic phosphate transmembrane transporter activity	4.43E-03
48	GO:0005217: intracellular ligand-gated ion channel activity	5.21E-03
49	GO:0004970: ionotropic glutamate receptor activity	5.21E-03
50	GO:0004190: aspartic-type endopeptidase activity	5.21E-03
51	GO:0015035: protein disulfide oxidoreductase activity	5.37E-03
52	GO:0016787: hydrolase activity	5.51E-03
53	GO:0043130: ubiquitin binding	6.03E-03
54	GO:0005216: ion channel activity	6.45E-03
55	GO:0016829: lyase activity	7.06E-03
56	GO:0015144: carbohydrate transmembrane transporter activity	7.80E-03
57	GO:0008514: organic anion transmembrane transporter activity	8.26E-03
58	GO:0003756: protein disulfide isomerase activity	8.26E-03
59	GO:0046910: pectinesterase inhibitor activity	8.39E-03
60	GO:0015297: antiporter activity	8.60E-03
61	GO:0047134: protein-disulfide reductase activity	8.74E-03
62	GO:0005351: sugar:proton symporter activity	8.80E-03
63	GO:0008536: Ran GTPase binding	9.73E-03
64	GO:0008080: N-acetyltransferase activity	9.73E-03
65	GO:0004791: thioredoxin-disulfide reductase activity	1.02E-02
66	GO:0005515: protein binding	1.21E-02
67	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	1.24E-02
68	GO:0003684: damaged DNA binding	1.29E-02
69	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	1.77E-02
70	GO:0003993: acid phosphatase activity	2.16E-02
71	GO:0042393: histone binding	2.29E-02
72	GO:0004185: serine-type carboxypeptidase activity	2.50E-02
73	GO:0015293: symporter activity	2.72E-02
74	GO:0005215: transporter activity	2.78E-02
75	GO:0015171: amino acid transmembrane transporter activity	3.33E-02
76	GO:0016491: oxidoreductase activity	3.45E-02
77	GO:0016746: transferase activity, transferring acyl groups	4.06E-02
78	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	4.75E-02

Rank	GO Term	Adjusted P value
1	GO:0005943: phosphatidylinositol 3-kinase complex, class IA	0.00E+00
2	GO:0009535: chloroplast thylakoid membrane	4.97E-22
3	GO:0009534: chloroplast thylakoid	2.46E-20
4	GO:0009507: chloroplast	1.26E-13
5	GO:0009579: thylakoid	1.08E-11
6	GO:0009941: chloroplast envelope	1.41E-10
7	GO:0009522: photosystem I	2.11E-10
8	GO:0010287: plastoglobule	6.27E-09
9	GO:0030076: light-harvesting complex	1.13E-07
10	GO:0009538: photosystem I reaction center	7.15E-07
11	GO:0009523: photosystem II	1.33E-06
12	GO:0009517: PSII associated light-harvesting complex II	1.12E-05
13	GO:0016021: integral component of membrane	1.60E-05
14	GO:0009783: photosystem II antenna complex	1.14E-04
15	GO:0031415: NatA complex	2.65E-04
16	GO:0016020: membrane	3.80E-04
17	GO:0042651: thylakoid membrane	4.22E-04
18	GO:0036513: Derlin-1 retrotranslocation complex	6.29E-04
19	GO:0030660: Golgi-associated vesicle membrane	8.35E-04
20	GO:0071556: integral component of lumenal side of endoplasmic reticulum membrane	8.35E-04
21	GO:0009543: chloroplast thylakoid lumen	8.76E-04
22	GO:0009570: chloroplast stroma	1.53E-03
23	GO:0009533: chloroplast stromal thylakoid	1.81E-03
24	GO:0071458: integral component of cytoplasmic side of endoplasmic reticulum membrane	2.09E-03
25	GO:0031977: thylakoid lumen	2.52E-03
26	GO:0005765: lysosomal membrane	3.71E-03
27	GO:0030095: chloroplast photosystem II	4.81E-03
28	GO:0009706: chloroplast inner membrane	5.21E-03
29	GO:0005783: endoplasmic reticulum	1.52E-02
30	GO:0031969: chloroplast membrane	1.74E-02
31	GO:0009707: chloroplast outer membrane	1.77E-02
32	GO:0031966: mitochondrial membrane	2.94E-02
33	GO:0010008: endosome membrane	3.57E-02
34	GO:0016607: nuclear speck	3.57E-02
35	GO:0005789: endoplasmic reticulum membrane	4.15E-02
36	GO:0005623: cell	4.75E-02