Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT2G24970

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0051290: protein heterotetramerization0.00E+00
2GO:0010425: DNA methylation on cytosine within a CNG sequence0.00E+00
3GO:1901671: positive regulation of superoxide dismutase activity0.00E+00
4GO:0016048: detection of temperature stimulus0.00E+00
5GO:0031508: pericentric heterochromatin assembly0.00E+00
6GO:0080094: response to trehalose-6-phosphate0.00E+00
7GO:0006342: chromatin silencing3.52E-08
8GO:0010424: DNA methylation on cytosine within a CG sequence9.28E-08
9GO:0010069: zygote asymmetric cytokinesis in embryo sac9.28E-08
10GO:0006458: 'de novo' protein folding6.56E-06
11GO:0042026: protein refolding6.56E-06
12GO:0044030: regulation of DNA methylation1.57E-05
13GO:0010216: maintenance of DNA methylation3.56E-05
14GO:0006169: adenosine salvage3.77E-05
15GO:0019510: S-adenosylhomocysteine catabolic process3.77E-05
16GO:0006260: DNA replication4.66E-05
17GO:0033353: S-adenosylmethionine cycle9.40E-05
18GO:0006269: DNA replication, synthesis of RNA primer9.40E-05
19GO:0045717: negative regulation of fatty acid biosynthetic process9.40E-05
20GO:0009662: etioplast organization9.40E-05
21GO:0071158: positive regulation of cell cycle arrest9.40E-05
22GO:0090309: positive regulation of methylation-dependent chromatin silencing9.40E-05
23GO:0015712: hexose phosphate transport9.40E-05
24GO:0061077: chaperone-mediated protein folding1.03E-04
25GO:0007005: mitochondrion organization1.14E-04
26GO:0035436: triose phosphate transmembrane transport1.63E-04
27GO:0006275: regulation of DNA replication1.63E-04
28GO:0032776: DNA methylation on cytosine1.63E-04
29GO:0035066: positive regulation of histone acetylation1.63E-04
30GO:0042276: error-prone translesion synthesis1.63E-04
31GO:0070828: heterochromatin organization1.63E-04
32GO:0006986: response to unfolded protein2.40E-04
33GO:0051085: chaperone mediated protein folding requiring cofactor2.40E-04
34GO:0035067: negative regulation of histone acetylation2.40E-04
35GO:0009694: jasmonic acid metabolic process3.24E-04
36GO:0051567: histone H3-K9 methylation3.24E-04
37GO:0015713: phosphoglycerate transport3.24E-04
38GO:0044209: AMP salvage4.13E-04
39GO:0042793: transcription from plastid promoter5.07E-04
40GO:0045814: negative regulation of gene expression, epigenetic6.05E-04
41GO:0000105: histidine biosynthetic process8.13E-04
42GO:0007155: cell adhesion8.13E-04
43GO:0048589: developmental growth1.04E-03
44GO:0006349: regulation of gene expression by genetic imprinting1.15E-03
45GO:0016569: covalent chromatin modification1.18E-03
46GO:0051555: flavonol biosynthetic process1.28E-03
47GO:0006325: chromatin organization1.28E-03
48GO:0009934: regulation of meristem structural organization1.81E-03
49GO:0007010: cytoskeleton organization2.25E-03
50GO:0009695: jasmonic acid biosynthetic process2.40E-03
51GO:0010468: regulation of gene expression2.54E-03
52GO:0031408: oxylipin biosynthetic process2.56E-03
53GO:0006334: nucleosome assembly2.56E-03
54GO:0006306: DNA methylation2.56E-03
55GO:0006730: one-carbon metabolic process2.72E-03
56GO:0009294: DNA mediated transformation2.89E-03
57GO:0042127: regulation of cell proliferation3.05E-03
58GO:0009658: chloroplast organization3.27E-03
59GO:0010583: response to cyclopentenone4.32E-03
60GO:0016032: viral process4.32E-03
61GO:0006310: DNA recombination4.70E-03
62GO:0009788: negative regulation of abscisic acid-activated signaling pathway5.52E-03
63GO:0006281: DNA repair5.96E-03
64GO:0048767: root hair elongation6.60E-03
65GO:0010218: response to far red light6.82E-03
66GO:0009910: negative regulation of flower development7.05E-03
67GO:0009867: jasmonic acid mediated signaling pathway7.51E-03
68GO:0010114: response to red light8.96E-03
69GO:0051301: cell division1.15E-02
70GO:0009909: regulation of flower development1.19E-02
71GO:0051726: regulation of cell cycle1.48E-02
72GO:0009790: embryo development1.86E-02
73GO:0006633: fatty acid biosynthetic process1.95E-02
74GO:0045490: pectin catabolic process2.09E-02
75GO:0045944: positive regulation of transcription from RNA polymerase II promoter2.70E-02
76GO:0006970: response to osmotic stress3.01E-02
77GO:0007049: cell cycle3.08E-02
78GO:0048366: leaf development3.20E-02
79GO:0080167: response to karrikin3.32E-02
80GO:0046686: response to cadmium ion3.35E-02
81GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway3.40E-02
82GO:0045892: negative regulation of transcription, DNA-templated3.82E-02
83GO:0032259: methylation4.25E-02
RankGO TermAdjusted P value
1GO:0030795: jasmonate O-methyltransferase activity0.00E+00
2GO:0102078: methyl jasmonate methylesterase activity0.00E+00
3GO:0004636: phosphoribosyl-ATP diphosphatase activity0.00E+00
4GO:0004635: phosphoribosyl-AMP cyclohydrolase activity0.00E+00
5GO:0047230: flavonol-3-O-glucoside L-rhamnosyltransferase activity0.00E+00
6GO:0003677: DNA binding1.87E-09
7GO:0046982: protein heterodimerization activity9.19E-07
8GO:0003886: DNA (cytosine-5-)-methyltransferase activity6.56E-06
9GO:0003682: chromatin binding2.85E-05
10GO:0044183: protein binding involved in protein folding3.56E-05
11GO:0004013: adenosylhomocysteinase activity3.77E-05
12GO:0030337: DNA polymerase processivity factor activity3.77E-05
13GO:0004001: adenosine kinase activity3.77E-05
14GO:0051082: unfolded protein binding9.35E-05
15GO:0003896: DNA primase activity9.40E-05
16GO:0010429: methyl-CpNpN binding1.63E-04
17GO:0071917: triose-phosphate transmembrane transporter activity1.63E-04
18GO:0010428: methyl-CpNpG binding1.63E-04
19GO:0015120: phosphoglycerate transmembrane transporter activity3.24E-04
20GO:0010385: double-stranded methylated DNA binding3.24E-04
21GO:0042393: histone binding6.01E-04
22GO:0008327: methyl-CpG binding1.40E-03
23GO:0051087: chaperone binding2.40E-03
24GO:0005507: copper ion binding2.46E-03
25GO:0030570: pectate lyase activity2.89E-03
26GO:0003713: transcription coactivator activity3.58E-03
27GO:0005355: glucose transmembrane transporter activity3.76E-03
28GO:0005200: structural constituent of cytoskeleton4.90E-03
29GO:0004693: cyclin-dependent protein serine/threonine kinase activity6.82E-03
30GO:0003697: single-stranded DNA binding7.51E-03
31GO:0051287: NAD binding1.02E-02
32GO:0080043: quercetin 3-O-glucosyltransferase activity1.33E-02
33GO:0080044: quercetin 7-O-glucosyltransferase activity1.33E-02
34GO:0004386: helicase activity1.51E-02
35GO:0005524: ATP binding1.71E-02
36GO:0016829: lyase activity1.76E-02
37GO:0016757: transferase activity, transferring glycosyl groups1.82E-02
38GO:0015297: antiporter activity2.02E-02
39GO:0008194: UDP-glycosyltransferase activity2.26E-02
40GO:0008168: methyltransferase activity2.78E-02
41GO:0004842: ubiquitin-protein transferase activity2.97E-02
42GO:0061630: ubiquitin protein ligase activity3.45E-02
RankGO TermAdjusted P value
1GO:0000788: nuclear nucleosome0.00E+00
2GO:0005721: pericentric heterochromatin0.00E+00
3GO:0000786: nucleosome4.71E-11
4GO:0000790: nuclear chromatin2.75E-06
5GO:0031436: BRCA1-BARD1 complex3.77E-05
6GO:0000792: heterochromatin9.40E-05
7GO:0070531: BRCA1-A complex1.63E-04
8GO:0005658: alpha DNA polymerase:primase complex1.63E-04
9GO:0005730: nucleolus2.64E-04
10GO:0010168: ER body5.07E-04
11GO:0010369: chromocenter6.05E-04
12GO:0005720: nuclear heterochromatin1.04E-03
13GO:0042644: chloroplast nucleoid1.04E-03
14GO:0022626: cytosolic ribosome1.49E-03
15GO:0009941: chloroplast envelope1.62E-03
16GO:0009579: thylakoid1.98E-03
17GO:0009570: chloroplast stroma2.91E-03
18GO:0009295: nucleoid4.90E-03
19GO:0005634: nucleus6.93E-03
20GO:0000325: plant-type vacuole7.05E-03
21GO:0005856: cytoskeleton9.73E-03
22GO:0031225: anchored component of membrane1.65E-02
23GO:0005759: mitochondrial matrix1.95E-02
24GO:0048046: apoplast1.98E-02
25GO:0046658: anchored component of plasma membrane2.55E-02
26GO:0009536: plastid2.64E-02
27GO:0009506: plasmodesma3.22E-02
28GO:0031969: chloroplast membrane3.32E-02
29GO:0043231: intracellular membrane-bounded organelle4.70E-02
Gene type



Gene DE type