Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT2G24360

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0010793: regulation of mRNA export from nucleus0.00E+00
2GO:2000541: positive regulation of protein geranylgeranylation0.00E+00
3GO:0016236: macroautophagy0.00E+00
4GO:2001253: regulation of histone H3-K36 trimethylation0.00E+00
5GO:0033320: UDP-D-xylose biosynthetic process1.91E-06
6GO:0042732: D-xylose metabolic process5.05E-06
7GO:0090421: embryonic meristem initiation4.04E-05
8GO:0009966: regulation of signal transduction4.04E-05
9GO:0030242: pexophagy4.04E-05
10GO:0000303: response to superoxide4.04E-05
11GO:0009225: nucleotide-sugar metabolic process7.15E-05
12GO:0010155: regulation of proton transport1.00E-04
13GO:0050684: regulation of mRNA processing1.00E-04
14GO:0007584: response to nutrient1.00E-04
15GO:0051258: protein polymerization1.00E-04
16GO:0032784: regulation of DNA-templated transcription, elongation1.73E-04
17GO:0006623: protein targeting to vacuole2.26E-04
18GO:0006891: intra-Golgi vesicle-mediated transport2.42E-04
19GO:0006809: nitric oxide biosynthetic process2.55E-04
20GO:0010107: potassium ion import3.43E-04
21GO:0045324: late endosome to vacuole transport3.43E-04
22GO:0006542: glutamine biosynthetic process3.43E-04
23GO:0098719: sodium ion import across plasma membrane4.37E-04
24GO:0018344: protein geranylgeranylation4.37E-04
25GO:0009723: response to ethylene4.91E-04
26GO:0048280: vesicle fusion with Golgi apparatus6.40E-04
27GO:0010044: response to aluminum ion7.49E-04
28GO:0006401: RNA catabolic process7.49E-04
29GO:0006614: SRP-dependent cotranslational protein targeting to membrane7.49E-04
30GO:0006605: protein targeting8.61E-04
31GO:0007389: pattern specification process9.77E-04
32GO:0009880: embryonic pattern specification9.77E-04
33GO:0048193: Golgi vesicle transport9.77E-04
34GO:0090305: nucleic acid phosphodiester bond hydrolysis1.10E-03
35GO:0001708: cell fate specification1.10E-03
36GO:0051453: regulation of intracellular pH1.22E-03
37GO:0048829: root cap development1.35E-03
38GO:0006896: Golgi to vacuole transport1.35E-03
39GO:0071365: cellular response to auxin stimulus1.63E-03
40GO:0008361: regulation of cell size1.63E-03
41GO:0012501: programmed cell death1.63E-03
42GO:0055046: microgametogenesis1.77E-03
43GO:0010102: lateral root morphogenesis1.77E-03
44GO:0048467: gynoecium development1.92E-03
45GO:0034976: response to endoplasmic reticulum stress2.23E-03
46GO:2000377: regulation of reactive oxygen species metabolic process2.39E-03
47GO:0006825: copper ion transport2.55E-03
48GO:0009269: response to desiccation2.72E-03
49GO:0009561: megagametogenesis3.24E-03
50GO:0042147: retrograde transport, endosome to Golgi3.42E-03
51GO:0010118: stomatal movement3.61E-03
52GO:0006970: response to osmotic stress3.84E-03
53GO:0006814: sodium ion transport3.99E-03
54GO:0009414: response to water deprivation4.17E-03
55GO:0080156: mitochondrial mRNA modification4.38E-03
56GO:0010193: response to ozone4.38E-03
57GO:0006468: protein phosphorylation4.56E-03
58GO:0016032: viral process4.58E-03
59GO:0009630: gravitropism4.58E-03
60GO:0007264: small GTPase mediated signal transduction4.58E-03
61GO:0006914: autophagy5.00E-03
62GO:0071805: potassium ion transmembrane transport5.21E-03
63GO:0006886: intracellular protein transport5.45E-03
64GO:0009816: defense response to bacterium, incompatible interaction5.86E-03
65GO:0042128: nitrate assimilation6.09E-03
66GO:0006888: ER to Golgi vesicle-mediated transport6.31E-03
67GO:0006499: N-terminal protein myristoylation7.25E-03
68GO:0010119: regulation of stomatal movement7.49E-03
69GO:0009867: jasmonic acid mediated signaling pathway7.99E-03
70GO:0009873: ethylene-activated signaling pathway8.40E-03
71GO:0006897: endocytosis9.01E-03
72GO:0006631: fatty acid metabolic process9.01E-03
73GO:0000209: protein polyubiquitination9.80E-03
74GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process1.09E-02
75GO:0009738: abscisic acid-activated signaling pathway1.12E-02
76GO:0009846: pollen germination1.12E-02
77GO:0051603: proteolysis involved in cellular protein catabolic process1.20E-02
78GO:0035556: intracellular signal transduction1.22E-02
79GO:0018105: peptidyl-serine phosphorylation1.54E-02
80GO:0051726: regulation of cell cycle1.57E-02
81GO:0009742: brassinosteroid mediated signaling pathway1.57E-02
82GO:0009790: embryo development1.97E-02
83GO:0006633: fatty acid biosynthetic process2.08E-02
84GO:0006979: response to oxidative stress2.37E-02
85GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process2.41E-02
86GO:0009826: unidimensional cell growth2.95E-02
87GO:0015031: protein transport2.98E-02
88GO:0046777: protein autophosphorylation3.71E-02
89GO:0045454: cell redox homeostasis4.02E-02
90GO:0009751: response to salicylic acid4.62E-02
91GO:0048364: root development4.81E-02
92GO:0009737: response to abscisic acid4.97E-02
RankGO TermAdjusted P value
1GO:0005092: GDP-dissociation inhibitor activity0.00E+00
2GO:0048040: UDP-glucuronate decarboxylase activity5.05E-06
3GO:0070403: NAD+ binding7.36E-06
4GO:0008802: betaine-aldehyde dehydrogenase activity4.04E-05
5GO:0005093: Rab GDP-dissociation inhibitor activity1.73E-04
6GO:0005047: signal recognition particle binding1.73E-04
7GO:0019829: cation-transporting ATPase activity1.73E-04
8GO:0035198: miRNA binding2.55E-04
9GO:0004356: glutamate-ammonia ligase activity4.37E-04
10GO:0017137: Rab GTPase binding4.37E-04
11GO:0004029: aldehyde dehydrogenase (NAD) activity5.37E-04
12GO:0102391: decanoate--CoA ligase activity6.40E-04
13GO:0003950: NAD+ ADP-ribosyltransferase activity6.40E-04
14GO:0004467: long-chain fatty acid-CoA ligase activity7.49E-04
15GO:0005267: potassium channel activity9.77E-04
16GO:0005375: copper ion transmembrane transporter activity9.77E-04
17GO:0004028: 3-chloroallyl aldehyde dehydrogenase activity1.22E-03
18GO:0005524: ATP binding1.23E-03
19GO:0015386: potassium:proton antiporter activity1.49E-03
20GO:0019888: protein phosphatase regulator activity1.77E-03
21GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism1.77E-03
22GO:0043130: ubiquitin binding2.39E-03
23GO:0005507: copper ion binding2.76E-03
24GO:0003756: protein disulfide isomerase activity3.24E-03
25GO:0016853: isomerase activity3.99E-03
26GO:0004872: receptor activity4.19E-03
27GO:0004518: nuclease activity4.58E-03
28GO:0015385: sodium:proton antiporter activity4.79E-03
29GO:0009931: calcium-dependent protein serine/threonine kinase activity6.09E-03
30GO:0004683: calmodulin-dependent protein kinase activity6.31E-03
31GO:0004672: protein kinase activity7.00E-03
32GO:0005096: GTPase activator activity7.01E-03
33GO:0005515: protein binding7.23E-03
34GO:0003697: single-stranded DNA binding7.99E-03
35GO:0004674: protein serine/threonine kinase activity8.41E-03
36GO:0000149: SNARE binding8.49E-03
37GO:0005484: SNAP receptor activity9.53E-03
38GO:0043621: protein self-association1.01E-02
39GO:0005516: calmodulin binding1.74E-02
40GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen1.80E-02
41GO:0003824: catalytic activity2.58E-02
42GO:0003729: mRNA binding3.49E-02
43GO:0004497: monooxygenase activity3.54E-02
44GO:0061630: ubiquitin protein ligase activity3.67E-02
45GO:0003924: GTPase activity4.67E-02
RankGO TermAdjusted P value
1GO:0005785: signal recognition particle receptor complex0.00E+00
2GO:0071561: nucleus-vacuole junction0.00E+00
3GO:0034271: phosphatidylinositol 3-kinase complex, class III, type I4.04E-05
4GO:0034272: phosphatidylinositol 3-kinase complex, class III, type II4.04E-05
5GO:0005770: late endosome1.95E-04
6GO:0005968: Rab-protein geranylgeranyltransferase complex2.55E-04
7GO:0032580: Golgi cisterna membrane2.95E-04
8GO:0005802: trans-Golgi network5.33E-04
9GO:0030140: trans-Golgi network transport vesicle5.37E-04
10GO:0005794: Golgi apparatus5.63E-04
11GO:0030173: integral component of Golgi membrane6.40E-04
12GO:0016363: nuclear matrix6.40E-04
13GO:0005768: endosome6.47E-04
14GO:0031902: late endosome membrane6.80E-04
15GO:0005886: plasma membrane6.81E-04
16GO:0012507: ER to Golgi transport vesicle membrane8.61E-04
17GO:0030131: clathrin adaptor complex8.61E-04
18GO:0005786: signal recognition particle, endoplasmic reticulum targeting9.77E-04
19GO:0030125: clathrin vesicle coat1.35E-03
20GO:0005578: proteinaceous extracellular matrix1.77E-03
21GO:0005905: clathrin-coated pit2.72E-03
22GO:0005783: endoplasmic reticulum3.81E-03
23GO:0005774: vacuolar membrane4.93E-03
24GO:0005788: endoplasmic reticulum lumen5.86E-03
25GO:0005643: nuclear pore6.77E-03
26GO:0005789: endoplasmic reticulum membrane7.36E-03
27GO:0000325: plant-type vacuole7.49E-03
28GO:0031201: SNARE complex9.01E-03
29GO:0000502: proteasome complex1.18E-02
30GO:0005747: mitochondrial respiratory chain complex I1.35E-02
31GO:0010008: endosome membrane1.35E-02
32GO:0005737: cytoplasm1.90E-02
33GO:0016021: integral component of membrane2.34E-02
34GO:0000139: Golgi membrane3.18E-02
35GO:0080008: Cul4-RING E3 ubiquitin ligase complex3.24E-02
36GO:0005773: vacuole3.54E-02
Gene type



Gene DE type