co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT2G22990

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:1901401: regulation of tetrapyrrole metabolic process	0.00E+00
2	GO:0033231: carbohydrate export	0.00E+00
3	GO:0006824: cobalt ion transport	4.60E-05
4	GO:0015671: oxygen transport	4.60E-05
5	GO:1902334: fructose export from vacuole to cytoplasm	4.60E-05
6	GO:0015755: fructose transport	4.60E-05
7	GO:0009750: response to fructose	4.81E-05
8	GO:0034755: iron ion transmembrane transport	1.13E-04
9	GO:0090342: regulation of cell aging	1.13E-04
10	GO:0070417: cellular response to cold	1.97E-04
11	GO:0051513: regulation of monopolar cell growth	2.85E-04
12	GO:0051639: actin filament network formation	2.85E-04
13	GO:0051205: protein insertion into membrane	3.84E-04
14	GO:0042938: dipeptide transport	3.84E-04
15	GO:0051764: actin crosslink formation	3.84E-04
16	GO:0009765: photosynthesis, light harvesting	3.84E-04
17	GO:0015995: chlorophyll biosynthetic process	4.87E-04
18	GO:0006656: phosphatidylcholine biosynthetic process	4.88E-04
19	GO:0045038: protein import into chloroplast thylakoid membrane	4.88E-04
20	GO:0009959: negative gravitropism	5.98E-04
21	GO:0009942: longitudinal axis specification	7.13E-04
22	GO:0009769: photosynthesis, light harvesting in photosystem II	8.33E-04
23	GO:0050829: defense response to Gram-negative bacterium	8.33E-04
24	GO:0009645: response to low light intensity stimulus	8.33E-04
25	GO:0010161: red light signaling pathway	8.33E-04
26	GO:0009926: auxin polar transport	8.61E-04
27	GO:0046620: regulation of organ growth	9.57E-04
28	GO:0009642: response to light intensity	9.57E-04
29	GO:0010100: negative regulation of photomorphogenesis	1.09E-03
30	GO:0007389: pattern specification process	1.09E-03
31	GO:0010099: regulation of photomorphogenesis	1.09E-03
32	GO:0048507: meristem development	1.22E-03
33	GO:0006783: heme biosynthetic process	1.22E-03
34	GO:0019432: triglyceride biosynthetic process	1.22E-03
35	GO:0042761: very long-chain fatty acid biosynthetic process	1.36E-03
36	GO:0009740: gibberellic acid mediated signaling pathway	1.51E-03
37	GO:0006949: syncytium formation	1.51E-03
38	GO:0006995: cellular response to nitrogen starvation	1.51E-03
39	GO:0009734: auxin-activated signaling pathway	1.63E-03
40	GO:0043085: positive regulation of catalytic activity	1.66E-03
41	GO:0030148: sphingolipid biosynthetic process	1.66E-03
42	GO:0015706: nitrate transport	1.81E-03
43	GO:0006636: unsaturated fatty acid biosynthetic process	2.49E-03
44	GO:0006833: water transport	2.49E-03
45	GO:0010187: negative regulation of seed germination	2.67E-03
46	GO:0051017: actin filament bundle assembly	2.67E-03
47	GO:0006289: nucleotide-excision repair	2.67E-03
48	GO:0007623: circadian rhythm	2.74E-03
49	GO:0007017: microtubule-based process	2.85E-03
50	GO:0009768: photosynthesis, light harvesting in photosystem I	2.85E-03
51	GO:0051260: protein homooligomerization	3.04E-03
52	GO:0009269: response to desiccation	3.04E-03
53	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	3.43E-03
54	GO:0009686: gibberellin biosynthetic process	3.43E-03
55	GO:0034220: ion transmembrane transport	4.04E-03
56	GO:0010305: leaf vascular tissue pattern formation	4.25E-03
57	GO:0006662: glycerol ether metabolic process	4.25E-03
58	GO:0009646: response to absence of light	4.47E-03
59	GO:0009749: response to glucose	4.68E-03
60	GO:0010193: response to ozone	4.91E-03
61	GO:0010583: response to cyclopentenone	5.13E-03
62	GO:0009828: plant-type cell wall loosening	5.60E-03
63	GO:0010252: auxin homeostasis	5.60E-03
64	GO:0015979: photosynthesis	5.94E-03
65	GO:0010027: thylakoid membrane organization	6.32E-03
66	GO:0010029: regulation of seed germination	6.57E-03
67	GO:0032259: methylation	7.36E-03
68	GO:0018298: protein-chromophore linkage	7.60E-03
69	GO:0048364: root development	8.02E-03
70	GO:0010218: response to far red light	8.14E-03
71	GO:0009910: negative regulation of flower development	8.41E-03
72	GO:0009637: response to blue light	8.96E-03
73	GO:0034599: cellular response to oxidative stress	9.25E-03
74	GO:0006631: fatty acid metabolic process	1.01E-02
75	GO:0009640: photomorphogenesis	1.07E-02
76	GO:0010114: response to red light	1.07E-02
77	GO:0009744: response to sucrose	1.07E-02
78	GO:0009644: response to high light intensity	1.13E-02
79	GO:0007275: multicellular organism development	1.26E-02
80	GO:0009664: plant-type cell wall organization	1.26E-02
81	GO:0006364: rRNA processing	1.32E-02
82	GO:0010224: response to UV-B	1.35E-02
83	GO:0006857: oligopeptide transport	1.39E-02
84	GO:0043086: negative regulation of catalytic activity	1.49E-02
85	GO:0042545: cell wall modification	1.66E-02
86	GO:0055085: transmembrane transport	1.74E-02
87	GO:0009790: embryo development	2.22E-02
88	GO:0006413: translational initiation	2.38E-02
89	GO:0040008: regulation of growth	2.42E-02
90	GO:0055114: oxidation-reduction process	2.44E-02
91	GO:0045490: pectin catabolic process	2.50E-02
92	GO:0009739: response to gibberellin	2.71E-02
93	GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process	2.71E-02
94	GO:0009733: response to auxin	3.11E-02
95	GO:0009826: unidimensional cell growth	3.32E-02
96	GO:0009658: chloroplast organization	3.42E-02
97	GO:0042254: ribosome biogenesis	3.46E-02
98	GO:0009409: response to cold	3.75E-02
99	GO:0009723: response to ethylene	3.79E-02
100	GO:0080167: response to karrikin	3.98E-02
101	GO:0046777: protein autophosphorylation	4.18E-02
102	GO:0005975: carbohydrate metabolic process	4.20E-02
103	GO:0045454: cell redox homeostasis	4.52E-02
104	GO:0006869: lipid transport	4.83E-02

Rank	GO Term	Adjusted P value
1	GO:0048529: magnesium-protoporphyrin IX monomethyl ester (oxidative) cyclase activity	0.00E+00
2	GO:0015284: fructose uniporter activity	0.00E+00
3	GO:0004462: lactoylglutathione lyase activity	6.25E-06
4	GO:0010313: phytochrome binding	4.60E-05
5	GO:0052631: sphingolipid delta-8 desaturase activity	4.60E-05
6	GO:0005344: oxygen transporter activity	4.60E-05
7	GO:0047066: phospholipid-hydroperoxide glutathione peroxidase activity	4.60E-05
8	GO:0019172: glyoxalase III activity	1.13E-04
9	GO:0005353: fructose transmembrane transporter activity	1.13E-04
10	GO:0000234: phosphoethanolamine N-methyltransferase activity	1.13E-04
11	GO:0016868: intramolecular transferase activity, phosphotransferases	1.13E-04
12	GO:0016805: dipeptidase activity	1.95E-04
13	GO:0004180: carboxypeptidase activity	1.95E-04
14	GO:0070628: proteasome binding	3.84E-04
15	GO:0042936: dipeptide transporter activity	3.84E-04
16	GO:0031593: polyubiquitin binding	5.98E-04
17	GO:0004602: glutathione peroxidase activity	7.13E-04
18	GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water	1.09E-03
19	GO:0009672: auxin:proton symporter activity	1.36E-03
20	GO:0005381: iron ion transmembrane transporter activity	1.36E-03
21	GO:0008047: enzyme activator activity	1.51E-03
22	GO:0010329: auxin efflux transmembrane transporter activity	1.98E-03
23	GO:0051119: sugar transmembrane transporter activity	2.31E-03
24	GO:0004190: aspartic-type endopeptidase activity	2.31E-03
25	GO:0031409: pigment binding	2.49E-03
26	GO:0046910: pectinesterase inhibitor activity	2.56E-03
27	GO:0043130: ubiquitin binding	2.67E-03
28	GO:0047134: protein-disulfide reductase activity	3.83E-03
29	GO:0004791: thioredoxin-disulfide reductase activity	4.47E-03
30	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	5.37E-03
31	GO:0051015: actin filament binding	5.37E-03
32	GO:0003684: damaged DNA binding	5.60E-03
33	GO:0005200: structural constituent of cytoskeleton	5.84E-03
34	GO:0005215: transporter activity	6.05E-03
35	GO:0015250: water channel activity	6.32E-03
36	GO:0016168: chlorophyll binding	6.57E-03
37	GO:0008757: S-adenosylmethionine-dependent methyltransferase activity	7.34E-03
38	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	7.60E-03
39	GO:0004712: protein serine/threonine/tyrosine kinase activity	9.53E-03
40	GO:0008289: lipid binding	1.07E-02
41	GO:0046872: metal ion binding	1.29E-02
42	GO:0045330: aspartyl esterase activity	1.42E-02
43	GO:0030599: pectinesterase activity	1.63E-02
44	GO:0003779: actin binding	1.66E-02
45	GO:0015035: protein disulfide oxidoreductase activity	1.73E-02
46	GO:0016829: lyase activity	2.10E-02
47	GO:0003743: translation initiation factor activity	2.80E-02
48	GO:0042802: identical protein binding	2.97E-02
49	GO:0008168: methyltransferase activity	3.32E-02
50	GO:0016788: hydrolase activity, acting on ester bonds	3.46E-02
51	GO:0016491: oxidoreductase activity	3.65E-02
52	GO:0008233: peptidase activity	3.93E-02
53	GO:0052689: carboxylic ester hydrolase activity	4.27E-02

Rank	GO Term	Adjusted P value
1	GO:0005943: phosphatidylinositol 3-kinase complex, class IA	0.00E+00
2	GO:0009534: chloroplast thylakoid	3.83E-06
3	GO:0009535: chloroplast thylakoid membrane	1.60E-05
4	GO:0032432: actin filament bundle	2.85E-04
5	GO:0030660: Golgi-associated vesicle membrane	3.84E-04
6	GO:0071556: integral component of lumenal side of endoplasmic reticulum membrane	3.84E-04
7	GO:0009517: PSII associated light-harvesting complex II	3.84E-04
8	GO:0071458: integral component of cytoplasmic side of endoplasmic reticulum membrane	9.57E-04
9	GO:0009570: chloroplast stroma	1.21E-03
10	GO:0045298: tubulin complex	1.22E-03
11	GO:0009507: chloroplast	1.33E-03
12	GO:0005884: actin filament	1.66E-03
13	GO:0005765: lysosomal membrane	1.66E-03
14	GO:0009543: chloroplast thylakoid lumen	2.00E-03
15	GO:0005623: cell	2.05E-03
16	GO:0030095: chloroplast photosystem II	2.14E-03
17	GO:0030076: light-harvesting complex	2.31E-03
18	GO:0009522: photosystem I	4.47E-03
19	GO:0009523: photosystem II	4.68E-03
20	GO:0071944: cell periphery	5.37E-03
21	GO:0005618: cell wall	7.82E-03
22	GO:0005789: endoplasmic reticulum membrane	9.11E-03
23	GO:0031977: thylakoid lumen	1.01E-02
24	GO:0009941: chloroplast envelope	1.01E-02
25	GO:0016021: integral component of membrane	1.09E-02
26	GO:0010008: endosome membrane	1.52E-02
27	GO:0009579: thylakoid	1.64E-02
28	GO:0009706: chloroplast inner membrane	1.70E-02
29	GO:0010287: plastoglobule	1.92E-02
30	GO:0009705: plant-type vacuole membrane	2.50E-02
31	GO:0016020: membrane	2.83E-02
32	GO:0005886: plasma membrane	3.09E-02
33	GO:0009505: plant-type cell wall	3.47E-02
34	GO:0005874: microtubule	3.88E-02