co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT2G22980

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0010203: response to very low fluence red light stimulus	0.00E+00
2	GO:0010219: regulation of vernalization response	0.00E+00
3	GO:0010378: temperature compensation of the circadian clock	0.00E+00
4	GO:1903428: positive regulation of reactive oxygen species biosynthetic process	0.00E+00
5	GO:0018298: protein-chromophore linkage	3.92E-07
6	GO:0010218: response to far red light	5.12E-07
7	GO:0009645: response to low light intensity stimulus	8.51E-07
8	GO:0007623: circadian rhythm	1.87E-06
9	GO:0010600: regulation of auxin biosynthetic process	1.71E-05
10	GO:0009768: photosynthesis, light harvesting in photosystem I	2.65E-05
11	GO:0000380: alternative mRNA splicing, via spliceosome	2.79E-05
12	GO:0010244: response to low fluence blue light stimulus by blue low-fluence system	5.87E-05
13	GO:0009585: red, far-red light phototransduction	6.21E-05
14	GO:0010161: red light signaling pathway	7.88E-05
15	GO:0010928: regulation of auxin mediated signaling pathway	1.02E-04
16	GO:1902265: abscisic acid homeostasis	1.46E-04
17	GO:0015812: gamma-aminobutyric acid transport	1.46E-04
18	GO:0032958: inositol phosphate biosynthetic process	1.46E-04
19	GO:0006369: termination of RNA polymerase II transcription	1.46E-04
20	GO:0010201: response to continuous far red light stimulus by the high-irradiance response system	1.46E-04
21	GO:1990641: response to iron ion starvation	1.46E-04
22	GO:0010362: negative regulation of anion channel activity by blue light	1.46E-04
23	GO:0009638: phototropism	1.88E-04
24	GO:0009817: defense response to fungus, incompatible interaction	2.33E-04
25	GO:0000160: phosphorelay signal transduction system	2.50E-04
26	GO:0009409: response to cold	3.06E-04
27	GO:0009637: response to blue light	3.21E-04
28	GO:0051170: nuclear import	3.33E-04
29	GO:0006101: citrate metabolic process	3.33E-04
30	GO:0080171: lytic vacuole organization	3.33E-04
31	GO:0010155: regulation of proton transport	3.33E-04
32	GO:0006611: protein export from nucleus	3.33E-04
33	GO:0048833: specification of floral organ number	3.33E-04
34	GO:0010114: response to red light	4.47E-04
35	GO:0009644: response to high light intensity	4.94E-04
36	GO:0008643: carbohydrate transport	4.94E-04
37	GO:0042344: indole glucosinolate catabolic process	5.47E-04
38	GO:0016255: attachment of GPI anchor to protein	5.47E-04
39	GO:0017006: protein-tetrapyrrole linkage	5.47E-04
40	GO:0000055: ribosomal large subunit export from nucleus	5.47E-04
41	GO:0010017: red or far-red light signaling pathway	7.02E-04
42	GO:0044211: CTP salvage	7.83E-04
43	GO:0015749: monosaccharide transport	7.83E-04
44	GO:0006020: inositol metabolic process	7.83E-04
45	GO:0009584: detection of visible light	7.83E-04
46	GO:0035556: intracellular signal transduction	8.51E-04
47	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	8.94E-04
48	GO:1901409: positive regulation of phosphorylation of RNA polymerase II C-terminal domain	1.04E-03
49	GO:0030104: water homeostasis	1.04E-03
50	GO:0044206: UMP salvage	1.04E-03
51	GO:0019287: isopentenyl diphosphate biosynthetic process, mevalonate pathway	1.04E-03
52	GO:0006646: phosphatidylethanolamine biosynthetic process	1.04E-03
53	GO:0009687: abscisic acid metabolic process	1.04E-03
54	GO:0048442: sepal development	1.04E-03
55	GO:0009765: photosynthesis, light harvesting	1.04E-03
56	GO:0016926: protein desumoylation	1.31E-03
57	GO:0043097: pyrimidine nucleoside salvage	1.31E-03
58	GO:0009904: chloroplast accumulation movement	1.31E-03
59	GO:0007029: endoplasmic reticulum organization	1.31E-03
60	GO:0048578: positive regulation of long-day photoperiodism, flowering	1.31E-03
61	GO:0031053: primary miRNA processing	1.61E-03
62	GO:0006206: pyrimidine nucleobase metabolic process	1.61E-03
63	GO:0042732: D-xylose metabolic process	1.61E-03
64	GO:0010029: regulation of seed germination	1.92E-03
65	GO:0045737: positive regulation of cyclin-dependent protein serine/threonine kinase activity	1.93E-03
66	GO:0017148: negative regulation of translation	1.93E-03
67	GO:0009903: chloroplast avoidance movement	1.93E-03
68	GO:0009861: jasmonic acid and ethylene-dependent systemic resistance	1.93E-03
69	GO:0071470: cellular response to osmotic stress	1.93E-03
70	GO:0009769: photosynthesis, light harvesting in photosystem II	2.27E-03
71	GO:0010044: response to aluminum ion	2.27E-03
72	GO:0009651: response to salt stress	2.29E-03
73	GO:0009819: drought recovery	2.63E-03
74	GO:0006506: GPI anchor biosynthetic process	2.63E-03
75	GO:0009704: de-etiolation	2.63E-03
76	GO:0032508: DNA duplex unwinding	2.63E-03
77	GO:0006102: isocitrate metabolic process	2.63E-03
78	GO:0010119: regulation of stomatal movement	2.72E-03
79	GO:0010043: response to zinc ion	2.72E-03
80	GO:0045087: innate immune response	2.98E-03
81	GO:0009827: plant-type cell wall modification	3.00E-03
82	GO:0001510: RNA methylation	3.00E-03
83	GO:0010099: regulation of photomorphogenesis	3.00E-03
84	GO:0006098: pentose-phosphate shunt	3.40E-03
85	GO:0000184: nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	3.40E-03
86	GO:0090333: regulation of stomatal closure	3.40E-03
87	GO:0046685: response to arsenic-containing substance	3.40E-03
88	GO:0042542: response to hydrogen peroxide	3.68E-03
89	GO:0048354: mucilage biosynthetic process involved in seed coat development	3.81E-03
90	GO:0006970: response to osmotic stress	3.81E-03
91	GO:0009640: photomorphogenesis	3.83E-03
92	GO:0048441: petal development	4.23E-03
93	GO:0009641: shade avoidance	4.23E-03
94	GO:0080167: response to karrikin	4.56E-03
95	GO:0009682: induced systemic resistance	4.67E-03
96	GO:0052544: defense response by callose deposition in cell wall	4.67E-03
97	GO:0016485: protein processing	4.67E-03
98	GO:0044550: secondary metabolite biosynthetic process	5.07E-03
99	GO:0015979: photosynthesis	5.40E-03
100	GO:0032436: positive regulation of proteasomal ubiquitin-dependent protein catabolic process	5.60E-03
101	GO:0009785: blue light signaling pathway	5.60E-03
102	GO:0009718: anthocyanin-containing compound biosynthetic process	5.60E-03
103	GO:0045892: negative regulation of transcription, DNA-templated	5.85E-03
104	GO:0048440: carpel development	6.09E-03
105	GO:0009266: response to temperature stimulus	6.09E-03
106	GO:0007030: Golgi organization	6.59E-03
107	GO:0019853: L-ascorbic acid biosynthetic process	6.59E-03
108	GO:0010030: positive regulation of seed germination	6.59E-03
109	GO:0006406: mRNA export from nucleus	7.63E-03
110	GO:0016575: histone deacetylation	8.18E-03
111	GO:0009269: response to desiccation	8.73E-03
112	GO:0003333: amino acid transmembrane transport	8.73E-03
113	GO:0048511: rhythmic process	8.73E-03
114	GO:0009693: ethylene biosynthetic process	9.89E-03
115	GO:0071215: cellular response to abscisic acid stimulus	9.89E-03
116	GO:0006012: galactose metabolic process	9.89E-03
117	GO:0009414: response to water deprivation	9.90E-03
118	GO:0009737: response to abscisic acid	9.92E-03
119	GO:0048443: stamen development	1.05E-02
120	GO:0010501: RNA secondary structure unwinding	1.17E-02
121	GO:0071472: cellular response to salt stress	1.24E-02
122	GO:0046323: glucose import	1.24E-02
123	GO:0006814: sodium ion transport	1.30E-02
124	GO:0042752: regulation of circadian rhythm	1.30E-02
125	GO:0010228: vegetative to reproductive phase transition of meristem	1.33E-02
126	GO:0008654: phospholipid biosynthetic process	1.37E-02
127	GO:0009739: response to gibberellin	1.42E-02
128	GO:0048510: regulation of timing of transition from vegetative to reproductive phase	1.43E-02
129	GO:0009738: abscisic acid-activated signaling pathway	1.49E-02
130	GO:0009630: gravitropism	1.50E-02
131	GO:0009617: response to bacterium	1.52E-02
132	GO:0009416: response to light stimulus	1.55E-02
133	GO:1901657: glycosyl compound metabolic process	1.57E-02
134	GO:0019760: glucosinolate metabolic process	1.64E-02
135	GO:0016126: sterol biosynthetic process	1.86E-02
136	GO:0005975: carbohydrate metabolic process	1.92E-02
137	GO:0015995: chlorophyll biosynthetic process	2.09E-02
138	GO:0055085: transmembrane transport	2.10E-02
139	GO:0006811: ion transport	2.41E-02
140	GO:0009834: plant-type secondary cell wall biogenesis	2.41E-02
141	GO:0006099: tricarboxylic acid cycle	2.75E-02
142	GO:0006355: regulation of transcription, DNA-templated	2.98E-02
143	GO:0007165: signal transduction	3.07E-02
144	GO:0000209: protein polyubiquitination	3.28E-02
145	GO:0009408: response to heat	3.60E-02
146	GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process	3.65E-02
147	GO:0000165: MAPK cascade	3.65E-02
148	GO:0006812: cation transport	3.75E-02
149	GO:0051603: proteolysis involved in cellular protein catabolic process	4.04E-02
150	GO:0006857: oligopeptide transport	4.14E-02
151	GO:0009909: regulation of flower development	4.24E-02

Rank	GO Term	Adjusted P value
1	GO:0009045: xylose isomerase activity	0.00E+00
2	GO:0004567: beta-mannosidase activity	0.00E+00
3	GO:0004421: hydroxymethylglutaryl-CoA synthase activity	0.00E+00
4	GO:0080082: esculin beta-glucosidase activity	0.00E+00
5	GO:0005358: high-affinity hydrogen:glucose symporter activity	0.00E+00
6	GO:0080081: 4-methylumbelliferyl-beta-D-glucopyranoside beta-glucosidase activity	0.00E+00
7	GO:0016428: tRNA (cytosine-5-)-methyltransferase activity	0.00E+00
8	GO:0047668: amygdalin beta-glucosidase activity	0.00E+00
9	GO:0080083: beta-gentiobiose beta-glucosidase activity	0.00E+00
10	GO:0030504: inorganic diphosphate transmembrane transporter activity	0.00E+00
11	GO:0010349: L-galactose dehydrogenase activity	0.00E+00
12	GO:0031409: pigment binding	1.89E-05
13	GO:0000828: inositol hexakisphosphate kinase activity	1.46E-04
14	GO:0015185: gamma-aminobutyric acid transmembrane transporter activity	1.46E-04
15	GO:0031516: far-red light photoreceptor activity	1.46E-04
16	GO:0033857: diphosphoinositol-pentakisphosphate kinase activity	1.46E-04
17	GO:0009679: hexose:proton symporter activity	1.46E-04
18	GO:0000829: inositol heptakisphosphate kinase activity	1.46E-04
19	GO:0080079: cellobiose glucosidase activity	1.46E-04
20	GO:0016168: chlorophyll binding	1.74E-04
21	GO:0015180: L-alanine transmembrane transporter activity	3.33E-04
22	GO:0009883: red or far-red light photoreceptor activity	3.33E-04
23	GO:0004609: phosphatidylserine decarboxylase activity	3.33E-04
24	GO:0003994: aconitate hydratase activity	3.33E-04
25	GO:0004839: ubiquitin activating enzyme activity	3.33E-04
26	GO:0000155: phosphorelay sensor kinase activity	3.41E-04
27	GO:0004175: endopeptidase activity	3.85E-04
28	GO:0017150: tRNA dihydrouridine synthase activity	5.47E-04
29	GO:0008020: G-protein coupled photoreceptor activity	5.47E-04
30	GO:0048027: mRNA 5'-UTR binding	7.83E-04
31	GO:0015181: arginine transmembrane transporter activity	7.83E-04
32	GO:0009882: blue light photoreceptor activity	7.83E-04
33	GO:0043023: ribosomal large subunit binding	7.83E-04
34	GO:0015189: L-lysine transmembrane transporter activity	7.83E-04
35	GO:0005313: L-glutamate transmembrane transporter activity	1.04E-03
36	GO:0004845: uracil phosphoribosyltransferase activity	1.04E-03
37	GO:0015145: monosaccharide transmembrane transporter activity	1.31E-03
38	GO:0008641: small protein activating enzyme activity	1.31E-03
39	GO:0045300: acyl-[acyl-carrier-protein] desaturase activity	1.31E-03
40	GO:0016929: SUMO-specific protease activity	1.31E-03
41	GO:0010294: abscisic acid glucosyltransferase activity	1.31E-03
42	GO:0004672: protein kinase activity	1.41E-03
43	GO:0000156: phosphorelay response regulator activity	1.44E-03
44	GO:0015562: efflux transmembrane transporter activity	1.61E-03
45	GO:0000293: ferric-chelate reductase activity	1.61E-03
46	GO:0019137: thioglucosidase activity	1.61E-03
47	GO:0015144: carbohydrate transmembrane transporter activity	1.67E-03
48	GO:0004849: uridine kinase activity	1.93E-03
49	GO:0102483: scopolin beta-glucosidase activity	2.13E-03
50	GO:0004033: aldo-keto reductase (NADP) activity	2.63E-03
51	GO:0032041: NAD-dependent histone deacetylase activity (H3-K14 specific)	3.00E-03
52	GO:0001104: RNA polymerase II transcription cofactor activity	3.00E-03
53	GO:0008422: beta-glucosidase activity	3.25E-03
54	GO:0000989: transcription factor activity, transcription factor binding	3.40E-03
55	GO:0009815: 1-aminocyclopropane-1-carboxylate oxidase activity	3.40E-03
56	GO:0004673: protein histidine kinase activity	4.23E-03
57	GO:0004565: beta-galactosidase activity	5.60E-03
58	GO:0005315: inorganic phosphate transmembrane transporter activity	5.60E-03
59	GO:0008234: cysteine-type peptidase activity	5.70E-03
60	GO:0031624: ubiquitin conjugating enzyme binding	6.09E-03
61	GO:0016709: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen	6.32E-03
62	GO:0004407: histone deacetylase activity	7.63E-03
63	GO:0008324: cation transmembrane transporter activity	8.18E-03
64	GO:0004707: MAP kinase activity	8.73E-03
65	GO:0019706: protein-cysteine S-palmitoyltransferase activity	8.73E-03
66	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	9.42E-03
67	GO:0022891: substrate-specific transmembrane transporter activity	9.89E-03
68	GO:0008514: organic anion transmembrane transporter activity	1.05E-02
69	GO:0005515: protein binding	1.15E-02
70	GO:0015297: antiporter activity	1.21E-02
71	GO:0005351: sugar:proton symporter activity	1.24E-02
72	GO:0016538: cyclin-dependent protein serine/threonine kinase regulator activity	1.24E-02
73	GO:0010181: FMN binding	1.30E-02
74	GO:0016301: kinase activity	1.32E-02
75	GO:0004197: cysteine-type endopeptidase activity	1.50E-02
76	GO:0042802: identical protein binding	1.61E-02
77	GO:0003729: mRNA binding	1.87E-02
78	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	2.20E-02
79	GO:0004693: cyclin-dependent protein serine/threonine kinase activity	2.41E-02
80	GO:0019825: oxygen binding	2.42E-02
81	GO:0004497: monooxygenase activity	2.44E-02
82	GO:0003697: single-stranded DNA binding	2.66E-02
83	GO:0051539: 4 iron, 4 sulfur cluster binding	2.92E-02
84	GO:0005509: calcium ion binding	3.39E-02
85	GO:0015293: symporter activity	3.47E-02
86	GO:0005506: iron ion binding	3.68E-02
87	GO:0003690: double-stranded DNA binding	4.04E-02
88	GO:0004674: protein serine/threonine kinase activity	4.09E-02
89	GO:0046872: metal ion binding	4.11E-02
90	GO:0003824: catalytic activity	4.20E-02
91	GO:0015171: amino acid transmembrane transporter activity	4.24E-02
92	GO:0080043: quercetin 3-O-glucosyltransferase activity	4.75E-02
93	GO:0080044: quercetin 7-O-glucosyltransferase activity	4.75E-02
94	GO:0016874: ligase activity	4.85E-02
95	GO:0022857: transmembrane transporter activity	4.85E-02

Rank	GO Term	Adjusted P value
1	GO:0030076: light-harvesting complex	1.57E-05
2	GO:0009522: photosystem I	7.62E-05
3	GO:0016607: nuclear speck	8.99E-05
4	GO:0042765: GPI-anchor transamidase complex	5.47E-04
5	GO:0005777: peroxisome	9.83E-04
6	GO:0009517: PSII associated light-harvesting complex II	1.04E-03
7	GO:0010445: nuclear dicing body	1.04E-03
8	GO:0009898: cytoplasmic side of plasma membrane	1.04E-03
9	GO:0009523: photosystem II	1.19E-03
10	GO:0010287: plastoglobule	1.25E-03
11	GO:0016020: membrane	1.51E-03
12	GO:0070847: core mediator complex	1.61E-03
13	GO:0005851: eukaryotic translation initiation factor 2B complex	1.61E-03
14	GO:0009986: cell surface	2.27E-03
15	GO:0000307: cyclin-dependent protein kinase holoenzyme complex	3.00E-03
16	GO:0016604: nuclear body	3.81E-03
17	GO:0009579: thylakoid	4.62E-03
18	GO:0031966: mitochondrial membrane	4.80E-03
19	GO:0005764: lysosome	6.09E-03
20	GO:0016021: integral component of membrane	1.15E-02
21	GO:0005634: nucleus	1.25E-02
22	GO:0016592: mediator complex	1.50E-02
23	GO:0005829: cytosol	1.92E-02
24	GO:0009534: chloroplast thylakoid	1.97E-02
25	GO:0000151: ubiquitin ligase complex	2.25E-02
26	GO:0005618: cell wall	2.86E-02
27	GO:0009535: chloroplast thylakoid membrane	3.41E-02
28	GO:0005886: plasma membrane	3.66E-02
29	GO:0005681: spliceosomal complex	4.44E-02
30	GO:0005773: vacuole	4.62E-02
31	GO:0009505: plant-type cell wall	4.94E-02