co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT2G22660

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0010111: glyoxysome organization	0.00E+00
2	GO:2001253: regulation of histone H3-K36 trimethylation	0.00E+00
3	GO:0006987: activation of signaling protein activity involved in unfolded protein response	0.00E+00
4	GO:0032889: regulation of vacuole fusion, non-autophagic	0.00E+00
5	GO:0010793: regulation of mRNA export from nucleus	0.00E+00
6	GO:0000188: inactivation of MAPK activity	0.00E+00
7	GO:0033539: fatty acid beta-oxidation using acyl-CoA dehydrogenase	0.00E+00
8	GO:0033320: UDP-D-xylose biosynthetic process	2.11E-05
9	GO:0007029: endoplasmic reticulum organization	3.42E-05
10	GO:0042732: D-xylose metabolic process	5.10E-05
11	GO:0006635: fatty acid beta-oxidation	1.20E-04
12	GO:1902265: abscisic acid homeostasis	1.64E-04
13	GO:0046167: glycerol-3-phosphate biosynthetic process	1.64E-04
14	GO:0009966: regulation of signal transduction	1.64E-04
15	GO:0034063: stress granule assembly	1.64E-04
16	GO:0010603: regulation of cytoplasmic mRNA processing body assembly	1.64E-04
17	GO:0008202: steroid metabolic process	2.25E-04
18	GO:0050684: regulation of mRNA processing	3.73E-04
19	GO:0006641: triglyceride metabolic process	3.73E-04
20	GO:0007584: response to nutrient	3.73E-04
21	GO:0035542: regulation of SNARE complex assembly	3.73E-04
22	GO:0051258: protein polymerization	3.73E-04
23	GO:0016197: endosomal transport	3.73E-04
24	GO:0034398: telomere tethering at nuclear periphery	3.73E-04
25	GO:0034243: regulation of transcription elongation from RNA polymerase II promoter	3.73E-04
26	GO:0019395: fatty acid oxidation	3.73E-04
27	GO:0009257: 10-formyltetrahydrofolate biosynthetic process	3.73E-04
28	GO:0006611: protein export from nucleus	3.73E-04
29	GO:0009225: nucleotide-sugar metabolic process	5.09E-04
30	GO:0032786: positive regulation of DNA-templated transcription, elongation	6.11E-04
31	GO:0019563: glycerol catabolic process	6.11E-04
32	GO:0032784: regulation of DNA-templated transcription, elongation	6.11E-04
33	GO:0000055: ribosomal large subunit export from nucleus	6.11E-04
34	GO:0009695: jasmonic acid biosynthetic process	6.90E-04
35	GO:0032456: endocytic recycling	8.73E-04
36	GO:0006072: glycerol-3-phosphate metabolic process	8.73E-04
37	GO:0009113: purine nucleobase biosynthetic process	8.73E-04
38	GO:0051601: exocyst localization	8.73E-04
39	GO:0000973: posttranscriptional tethering of RNA polymerase II gene DNA at nuclear periphery	8.73E-04
40	GO:0051259: protein oligomerization	8.73E-04
41	GO:1902584: positive regulation of response to water deprivation	1.16E-03
42	GO:0010107: potassium ion import	1.16E-03
43	GO:0010188: response to microbial phytotoxin	1.16E-03
44	GO:0006646: phosphatidylethanolamine biosynthetic process	1.16E-03
45	GO:0009687: abscisic acid metabolic process	1.16E-03
46	GO:0010225: response to UV-C	1.47E-03
47	GO:0043097: pyrimidine nucleoside salvage	1.47E-03
48	GO:0006891: intra-Golgi vesicle-mediated transport	1.49E-03
49	GO:0006206: pyrimidine nucleobase metabolic process	1.80E-03
50	GO:0006751: glutathione catabolic process	1.80E-03
51	GO:0010264: myo-inositol hexakisphosphate biosynthetic process	1.80E-03
52	GO:0006397: mRNA processing	2.04E-03
53	GO:0048280: vesicle fusion with Golgi apparatus	2.17E-03
54	GO:0009816: defense response to bacterium, incompatible interaction	2.26E-03
55	GO:0006614: SRP-dependent cotranslational protein targeting to membrane	2.55E-03
56	GO:0009396: folic acid-containing compound biosynthetic process	2.55E-03
57	GO:0006401: RNA catabolic process	2.55E-03
58	GO:0098869: cellular oxidant detoxification	2.55E-03
59	GO:0009819: drought recovery	2.95E-03
60	GO:0030091: protein repair	2.95E-03
61	GO:0006605: protein targeting	2.95E-03
62	GO:0060321: acceptance of pollen	3.37E-03
63	GO:0048193: Golgi vesicle transport	3.37E-03
64	GO:0030968: endoplasmic reticulum unfolded protein response	3.37E-03
65	GO:0006972: hyperosmotic response	3.37E-03
66	GO:0006979: response to oxidative stress	3.63E-03
67	GO:0009051: pentose-phosphate shunt, oxidative branch	3.81E-03
68	GO:0090305: nucleic acid phosphodiester bond hydrolysis	3.81E-03
69	GO:0000184: nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	3.81E-03
70	GO:0006897: endocytosis	4.18E-03
71	GO:0035999: tetrahydrofolate interconversion	4.27E-03
72	GO:0006896: Golgi to vacuole transport	4.75E-03
73	GO:0006325: chromatin organization	4.75E-03
74	GO:0009870: defense response signaling pathway, resistance gene-dependent	4.75E-03
75	GO:0006535: cysteine biosynthetic process from serine	4.75E-03
76	GO:0006298: mismatch repair	4.75E-03
77	GO:0010102: lateral root morphogenesis	6.30E-03
78	GO:0006006: glucose metabolic process	6.30E-03
79	GO:0002237: response to molecule of bacterial origin	6.85E-03
80	GO:0007034: vacuolar transport	6.85E-03
81	GO:0010030: positive regulation of seed germination	7.41E-03
82	GO:0007033: vacuole organization	7.41E-03
83	GO:0034976: response to endoplasmic reticulum stress	8.00E-03
84	GO:0006406: mRNA export from nucleus	8.59E-03
85	GO:0006289: nucleotide-excision repair	8.59E-03
86	GO:2000377: regulation of reactive oxygen species metabolic process	8.59E-03
87	GO:0019344: cysteine biosynthetic process	8.59E-03
88	GO:0006825: copper ion transport	9.21E-03
89	GO:0031408: oxylipin biosynthetic process	9.84E-03
90	GO:0051260: protein homooligomerization	9.84E-03
91	GO:0035428: hexose transmembrane transport	1.05E-02
92	GO:0071215: cellular response to abscisic acid stimulus	1.11E-02
93	GO:0006012: galactose metabolic process	1.11E-02
94	GO:0009306: protein secretion	1.18E-02
95	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	1.25E-02
96	GO:0042147: retrograde transport, endosome to Golgi	1.25E-02
97	GO:0051028: mRNA transport	1.25E-02
98	GO:0000413: protein peptidyl-prolyl isomerization	1.32E-02
99	GO:0010051: xylem and phloem pattern formation	1.32E-02
100	GO:0010118: stomatal movement	1.32E-02
101	GO:0006606: protein import into nucleus	1.32E-02
102	GO:0045489: pectin biosynthetic process	1.39E-02
103	GO:0046323: glucose import	1.39E-02
104	GO:0048544: recognition of pollen	1.47E-02
105	GO:0006623: protein targeting to vacuole	1.54E-02
106	GO:0010183: pollen tube guidance	1.54E-02
107	GO:0008654: phospholipid biosynthetic process	1.54E-02
108	GO:0010583: response to cyclopentenone	1.70E-02
109	GO:0032502: developmental process	1.70E-02
110	GO:0009630: gravitropism	1.70E-02
111	GO:0008380: RNA splicing	1.80E-02
112	GO:0006914: autophagy	1.86E-02
113	GO:0010286: heat acclimation	1.94E-02
114	GO:0006904: vesicle docking involved in exocytosis	1.94E-02
115	GO:0006468: protein phosphorylation	1.98E-02
116	GO:0051607: defense response to virus	2.02E-02
117	GO:0006888: ER to Golgi vesicle-mediated transport	2.36E-02
118	GO:0048573: photoperiodism, flowering	2.36E-02
119	GO:0006950: response to stress	2.36E-02
120	GO:0008219: cell death	2.54E-02
121	GO:0006457: protein folding	2.66E-02
122	GO:0009834: plant-type secondary cell wall biogenesis	2.72E-02
123	GO:0006499: N-terminal protein myristoylation	2.72E-02
124	GO:0010119: regulation of stomatal movement	2.82E-02
125	GO:0009631: cold acclimation	2.82E-02
126	GO:0010043: response to zinc ion	2.82E-02
127	GO:0009910: negative regulation of flower development	2.82E-02
128	GO:0016051: carbohydrate biosynthetic process	3.01E-02
129	GO:0016192: vesicle-mediated transport	3.04E-02
130	GO:0046777: protein autophosphorylation	3.09E-02
131	GO:0034599: cellular response to oxidative stress	3.10E-02
132	GO:0006099: tricarboxylic acid cycle	3.10E-02
133	GO:0006887: exocytosis	3.40E-02
134	GO:0045454: cell redox homeostasis	3.46E-02
135	GO:0006886: intracellular protein transport	3.57E-02
136	GO:0006869: lipid transport	3.79E-02
137	GO:0007165: signal transduction	3.93E-02
138	GO:0055114: oxidation-reduction process	4.09E-02
139	GO:0042538: hyperosmotic salinity response	4.23E-02
140	GO:0009846: pollen germination	4.23E-02
141	GO:0010224: response to UV-B	4.56E-02
142	GO:0006857: oligopeptide transport	4.67E-02
143	GO:0016310: phosphorylation	4.96E-02

Rank	GO Term	Adjusted P value
1	GO:0047787: delta4-3-oxosteroid 5beta-reductase activity	0.00E+00
2	GO:0004491: methylmalonate-semialdehyde dehydrogenase (acylating) activity	0.00E+00
3	GO:0051765: inositol tetrakisphosphate kinase activity	0.00E+00
4	GO:0070191: methionine-R-sulfoxide reductase activity	0.00E+00
5	GO:0004370: glycerol kinase activity	0.00E+00
6	GO:0017017: MAP kinase tyrosine/serine/threonine phosphatase activity	0.00E+00
7	GO:0017168: 5-oxoprolinase (ATP-hydrolyzing) activity	0.00E+00
8	GO:0051766: inositol trisphosphate kinase activity	0.00E+00
9	GO:0048040: UDP-glucuronate decarboxylase activity	5.10E-05
10	GO:0070403: NAD+ binding	7.14E-05
11	GO:0000824: inositol tetrakisphosphate 3-kinase activity	1.64E-04
12	GO:0008692: 3-hydroxybutyryl-CoA epimerase activity	1.64E-04
13	GO:0047066: phospholipid-hydroperoxide glutathione peroxidase activity	1.64E-04
14	GO:0030544: Hsp70 protein binding	1.64E-04
15	GO:0047326: inositol tetrakisphosphate 5-kinase activity	1.64E-04
16	GO:0000823: inositol-1,4,5-trisphosphate 6-kinase activity	1.64E-04
17	GO:0019707: protein-cysteine S-acyltransferase activity	1.64E-04
18	GO:0008440: inositol-1,4,5-trisphosphate 3-kinase activity	1.64E-04
19	GO:0035671: enone reductase activity	1.64E-04
20	GO:0004488: methylenetetrahydrofolate dehydrogenase (NADP+) activity	3.73E-04
21	GO:0004477: methenyltetrahydrofolate cyclohydrolase activity	3.73E-04
22	GO:0003857: 3-hydroxyacyl-CoA dehydrogenase activity	3.73E-04
23	GO:0003988: acetyl-CoA C-acyltransferase activity	3.73E-04
24	GO:0004329: formate-tetrahydrofolate ligase activity	3.73E-04
25	GO:0019200: carbohydrate kinase activity	3.73E-04
26	GO:0004609: phosphatidylserine decarboxylase activity	3.73E-04
27	GO:0004180: carboxypeptidase activity	6.11E-04
28	GO:0005047: signal recognition particle binding	6.11E-04
29	GO:0019829: cation-transporting ATPase activity	6.11E-04
30	GO:0005509: calcium ion binding	7.97E-04
31	GO:0004108: citrate (Si)-synthase activity	8.73E-04
32	GO:0043023: ribosomal large subunit binding	8.73E-04
33	GO:0004165: dodecenoyl-CoA delta-isomerase activity	8.73E-04
34	GO:0004300: enoyl-CoA hydratase activity	8.73E-04
35	GO:0052725: inositol-1,3,4-trisphosphate 6-kinase activity	8.73E-04
36	GO:0000993: RNA polymerase II core binding	1.16E-03
37	GO:0004345: glucose-6-phosphate dehydrogenase activity	1.16E-03
38	GO:0010294: abscisic acid glucosyltransferase activity	1.47E-03
39	GO:0016301: kinase activity	1.54E-03
40	GO:0005507: copper ion binding	1.93E-03
41	GO:0033743: peptide-methionine (R)-S-oxide reductase activity	2.17E-03
42	GO:0003950: NAD+ ADP-ribosyltransferase activity	2.17E-03
43	GO:0004849: uridine kinase activity	2.17E-03
44	GO:0003730: mRNA 3'-UTR binding	2.17E-03
45	GO:0004602: glutathione peroxidase activity	2.17E-03
46	GO:0008113: peptide-methionine (S)-S-oxide reductase activity	2.17E-03
47	GO:0004124: cysteine synthase activity	2.17E-03
48	GO:0004034: aldose 1-epimerase activity	2.95E-03
49	GO:0004869: cysteine-type endopeptidase inhibitor activity	2.95E-03
50	GO:0017056: structural constituent of nuclear pore	2.95E-03
51	GO:0015288: porin activity	2.95E-03
52	GO:0005337: nucleoside transmembrane transporter activity	2.95E-03
53	GO:0005267: potassium channel activity	3.37E-03
54	GO:0005375: copper ion transmembrane transporter activity	3.37E-03
55	GO:0008142: oxysterol binding	3.37E-03
56	GO:0003746: translation elongation factor activity	3.52E-03
57	GO:0000149: SNARE binding	3.84E-03
58	GO:0004712: protein serine/threonine/tyrosine kinase activity	3.84E-03
59	GO:0005524: ATP binding	3.92E-03
60	GO:0005487: nucleocytoplasmic transporter activity	4.27E-03
61	GO:0004028: 3-chloroallyl aldehyde dehydrogenase activity	4.27E-03
62	GO:0004713: protein tyrosine kinase activity	4.75E-03
63	GO:0004521: endoribonuclease activity	5.77E-03
64	GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism	6.30E-03
65	GO:0008139: nuclear localization sequence binding	6.30E-03
66	GO:0019888: protein phosphatase regulator activity	6.30E-03
67	GO:0003729: mRNA binding	7.18E-03
68	GO:0004725: protein tyrosine phosphatase activity	8.00E-03
69	GO:0043130: ubiquitin binding	8.59E-03
70	GO:0043424: protein histidine kinase binding	9.21E-03
71	GO:0019706: protein-cysteine S-palmitoyltransferase activity	9.84E-03
72	GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity	1.05E-02
73	GO:0003756: protein disulfide isomerase activity	1.18E-02
74	GO:0003727: single-stranded RNA binding	1.18E-02
75	GO:0005355: glucose transmembrane transporter activity	1.47E-02
76	GO:0016853: isomerase activity	1.47E-02
77	GO:0004872: receptor activity	1.54E-02
78	GO:0004518: nuclease activity	1.70E-02
79	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	1.77E-02
80	GO:0003684: damaged DNA binding	1.86E-02
81	GO:0042626: ATPase activity, coupled to transmembrane movement of substances	1.92E-02
82	GO:0009931: calcium-dependent protein serine/threonine kinase activity	2.27E-02
83	GO:0004004: ATP-dependent RNA helicase activity	2.36E-02
84	GO:0004683: calmodulin-dependent protein kinase activity	2.36E-02
85	GO:0008236: serine-type peptidase activity	2.45E-02
86	GO:0005096: GTPase activator activity	2.63E-02
87	GO:0050660: flavin adenine dinucleotide binding	2.70E-02
88	GO:0050897: cobalt ion binding	2.82E-02
89	GO:0003697: single-stranded DNA binding	3.01E-02
90	GO:0050661: NADP binding	3.30E-02
91	GO:0005525: GTP binding	3.58E-02
92	GO:0005484: SNAP receptor activity	3.60E-02
93	GO:0035091: phosphatidylinositol binding	3.81E-02
94	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	4.02E-02
95	GO:0003924: GTPase activity	4.26E-02
96	GO:0009055: electron carrier activity	4.56E-02

Rank	GO Term	Adjusted P value
1	GO:0005785: signal recognition particle receptor complex	0.00E+00
2	GO:0071942: XPC complex	0.00E+00
3	GO:0000111: nucleotide-excision repair factor 2 complex	0.00E+00
4	GO:0005768: endosome	2.87E-05
5	GO:0032044: DSIF complex	1.64E-04
6	GO:0005774: vacuolar membrane	3.60E-04
7	GO:0030897: HOPS complex	3.73E-04
8	GO:0031902: late endosome membrane	5.00E-04
9	GO:0005802: trans-Golgi network	5.87E-04
10	GO:0042406: extrinsic component of endoplasmic reticulum membrane	6.11E-04
11	GO:0044614: nuclear pore cytoplasmic filaments	6.11E-04
12	GO:0005783: endoplasmic reticulum	8.08E-04
13	GO:0005829: cytosol	9.68E-04
14	GO:0005886: plasma membrane	9.69E-04
15	GO:0000139: Golgi membrane	1.69E-03
16	GO:0030140: trans-Golgi network transport vesicle	1.80E-03
17	GO:0016363: nuclear matrix	2.17E-03
18	GO:0000815: ESCRT III complex	2.17E-03
19	GO:0030173: integral component of Golgi membrane	2.17E-03
20	GO:0009705: plant-type vacuole membrane	2.48E-03
21	GO:0030131: clathrin adaptor complex	2.95E-03
22	GO:0012507: ER to Golgi transport vesicle membrane	2.95E-03
23	GO:0009514: glyoxysome	3.37E-03
24	GO:0005786: signal recognition particle, endoplasmic reticulum targeting	3.37E-03
25	GO:0010494: cytoplasmic stress granule	3.81E-03
26	GO:0005794: Golgi apparatus	4.51E-03
27	GO:0030125: clathrin vesicle coat	4.75E-03
28	GO:0005765: lysosomal membrane	5.25E-03
29	GO:0005737: cytoplasm	6.75E-03
30	GO:0043234: protein complex	8.00E-03
31	GO:0005773: vacuole	8.98E-03
32	GO:0005905: clathrin-coated pit	9.84E-03
33	GO:0043231: intracellular membrane-bounded organelle	1.05E-02
34	GO:0005770: late endosome	1.39E-02
35	GO:0031965: nuclear membrane	1.54E-02
36	GO:0000145: exocyst	1.70E-02
37	GO:0016021: integral component of membrane	1.76E-02
38	GO:0032580: Golgi cisterna membrane	1.86E-02
39	GO:0005788: endoplasmic reticulum lumen	2.19E-02
40	GO:0005777: peroxisome	2.29E-02
41	GO:0005789: endoplasmic reticulum membrane	2.50E-02
42	GO:0000325: plant-type vacuole	2.82E-02
43	GO:0015934: large ribosomal subunit	2.82E-02
44	GO:0031201: SNARE complex	3.40E-02
45	GO:0090406: pollen tube	3.60E-02
46	GO:0005856: cytoskeleton	3.91E-02
47	GO:0005635: nuclear envelope	4.67E-02