co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT2G22430

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0043171: peptide catabolic process	0.00E+00
2	GO:0000390: spliceosomal complex disassembly	0.00E+00
3	GO:0060213: positive regulation of nuclear-transcribed mRNA poly(A) tail shortening	0.00E+00
4	GO:0010378: temperature compensation of the circadian clock	0.00E+00
5	GO:1903428: positive regulation of reactive oxygen species biosynthetic process	0.00E+00
6	GO:0009768: photosynthesis, light harvesting in photosystem I	1.18E-12
7	GO:0018298: protein-chromophore linkage	3.82E-10
8	GO:0009409: response to cold	3.52E-08
9	GO:0007623: circadian rhythm	1.99E-07
10	GO:0010218: response to far red light	9.73E-07
11	GO:0009645: response to low light intensity stimulus	1.31E-06
12	GO:0009769: photosynthesis, light harvesting in photosystem II	1.31E-06
13	GO:0042542: response to hydrogen peroxide	2.50E-06
14	GO:0032012: regulation of ARF protein signal transduction	5.37E-06
15	GO:0009737: response to abscisic acid	2.03E-05
16	GO:0009637: response to blue light	3.39E-05
17	GO:0015979: photosynthesis	3.45E-05
18	GO:0000380: alternative mRNA splicing, via spliceosome	3.73E-05
19	GO:0010114: response to red light	5.56E-05
20	GO:0009644: response to high light intensity	6.44E-05
21	GO:0007165: signal transduction	9.83E-05
22	GO:0006970: response to osmotic stress	1.55E-04
23	GO:0009609: response to symbiotic bacterium	1.73E-04
24	GO:0015812: gamma-aminobutyric acid transport	1.73E-04
25	GO:0032958: inositol phosphate biosynthetic process	1.73E-04
26	GO:0000291: nuclear-transcribed mRNA catabolic process, exonucleolytic	1.73E-04
27	GO:0009416: response to light stimulus	2.55E-04
28	GO:0009970: cellular response to sulfate starvation	2.85E-04
29	GO:0006995: cellular response to nitrogen starvation	2.85E-04
30	GO:0032509: endosome transport via multivesicular body sorting pathway	3.92E-04
31	GO:0051170: nuclear import	3.92E-04
32	GO:0045948: positive regulation of translational initiation	3.92E-04
33	GO:0048209: regulation of vesicle targeting, to, from or within Golgi	3.92E-04
34	GO:0001736: establishment of planar polarity	3.92E-04
35	GO:0015914: phospholipid transport	3.92E-04
36	GO:0009651: response to salt stress	4.04E-04
37	GO:0032436: positive regulation of proteasomal ubiquitin-dependent protein catabolic process	4.32E-04
38	GO:0042256: mature ribosome assembly	6.40E-04
39	GO:0034427: nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5'	6.40E-04
40	GO:0006598: polyamine catabolic process	6.40E-04
41	GO:0090630: activation of GTPase activity	6.40E-04
42	GO:0048511: rhythmic process	8.10E-04
43	GO:0009269: response to desiccation	8.10E-04
44	GO:0010017: red or far-red light signaling pathway	8.83E-04
45	GO:0006020: inositol metabolic process	9.13E-04
46	GO:0010601: positive regulation of auxin biosynthetic process	9.13E-04
47	GO:0080119: ER body organization	9.13E-04
48	GO:0031936: negative regulation of chromatin silencing	9.13E-04
49	GO:0080167: response to karrikin	1.18E-03
50	GO:0009687: abscisic acid metabolic process	1.21E-03
51	GO:0015743: malate transport	1.21E-03
52	GO:0009765: photosynthesis, light harvesting	1.21E-03
53	GO:1901409: positive regulation of phosphorylation of RNA polymerase II C-terminal domain	1.21E-03
54	GO:0010600: regulation of auxin biosynthetic process	1.21E-03
55	GO:0030104: water homeostasis	1.21E-03
56	GO:0006646: phosphatidylethanolamine biosynthetic process	1.21E-03
57	GO:0042752: regulation of circadian rhythm	1.40E-03
58	GO:0048578: positive regulation of long-day photoperiodism, flowering	1.54E-03
59	GO:0016926: protein desumoylation	1.54E-03
60	GO:0006656: phosphatidylcholine biosynthetic process	1.54E-03
61	GO:0043097: pyrimidine nucleoside salvage	1.54E-03
62	GO:0000302: response to reactive oxygen species	1.60E-03
63	GO:0006206: pyrimidine nucleobase metabolic process	1.89E-03
64	GO:0009635: response to herbicide	1.89E-03
65	GO:0000079: regulation of cyclin-dependent protein serine/threonine kinase activity	2.27E-03
66	GO:0000911: cytokinesis by cell plate formation	2.27E-03
67	GO:0010244: response to low fluence blue light stimulus by blue low-fluence system	2.27E-03
68	GO:0045737: positive regulation of cyclin-dependent protein serine/threonine kinase activity	2.27E-03
69	GO:0045926: negative regulation of growth	2.27E-03
70	GO:0009942: longitudinal axis specification	2.27E-03
71	GO:0009861: jasmonic acid and ethylene-dependent systemic resistance	2.27E-03
72	GO:0010555: response to mannitol	2.27E-03
73	GO:0006401: RNA catabolic process	2.67E-03
74	GO:0010161: red light signaling pathway	2.67E-03
75	GO:0098869: cellular oxidant detoxification	2.67E-03
76	GO:1900056: negative regulation of leaf senescence	2.67E-03
77	GO:0048437: floral organ development	2.67E-03
78	GO:0080111: DNA demethylation	2.67E-03
79	GO:1902074: response to salt	2.67E-03
80	GO:0010038: response to metal ion	2.67E-03
81	GO:0007155: cell adhesion	3.09E-03
82	GO:0010928: regulation of auxin mediated signaling pathway	3.09E-03
83	GO:0009819: drought recovery	3.09E-03
84	GO:0009415: response to water	3.09E-03
85	GO:0010078: maintenance of root meristem identity	3.09E-03
86	GO:0009704: de-etiolation	3.09E-03
87	GO:0032508: DNA duplex unwinding	3.09E-03
88	GO:0000160: phosphorelay signal transduction system	3.14E-03
89	GO:0010468: regulation of gene expression	3.40E-03
90	GO:0010119: regulation of stomatal movement	3.45E-03
91	GO:0009631: cold acclimation	3.45E-03
92	GO:0010043: response to zinc ion	3.45E-03
93	GO:0009880: embryonic pattern specification	3.54E-03
94	GO:0001510: RNA methylation	3.54E-03
95	GO:0006367: transcription initiation from RNA polymerase II promoter	3.54E-03
96	GO:0045087: innate immune response	3.78E-03
97	GO:0016051: carbohydrate biosynthetic process	3.78E-03
98	GO:0009414: response to water deprivation	3.90E-03
99	GO:0090333: regulation of stomatal closure	4.00E-03
100	GO:0009908: flower development	4.37E-03
101	GO:0009735: response to cytokinin	4.44E-03
102	GO:0005982: starch metabolic process	4.49E-03
103	GO:0006897: endocytosis	4.49E-03
104	GO:0090332: stomatal closure	4.49E-03
105	GO:2000280: regulation of root development	4.49E-03
106	GO:0010380: regulation of chlorophyll biosynthetic process	4.49E-03
107	GO:0010162: seed dormancy process	4.99E-03
108	GO:0055062: phosphate ion homeostasis	4.99E-03
109	GO:0009688: abscisic acid biosynthetic process	4.99E-03
110	GO:0000209: protein polyubiquitination	5.06E-03
111	GO:0008643: carbohydrate transport	5.26E-03
112	GO:0006355: regulation of transcription, DNA-templated	5.49E-03
113	GO:0048765: root hair cell differentiation	5.52E-03
114	GO:0035556: intracellular signal transduction	5.53E-03
115	GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process	5.89E-03
116	GO:0016925: protein sumoylation	6.06E-03
117	GO:0006890: retrograde vesicle-mediated transport, Golgi to ER	6.06E-03
118	GO:0010200: response to chitin	6.48E-03
119	GO:0009585: red, far-red light phototransduction	6.55E-03
120	GO:2000012: regulation of auxin polar transport	6.61E-03
121	GO:0010102: lateral root morphogenesis	6.61E-03
122	GO:0010540: basipetal auxin transport	7.20E-03
123	GO:0009266: response to temperature stimulus	7.20E-03
124	GO:0055085: transmembrane transport	7.31E-03
125	GO:0006406: mRNA export from nucleus	9.03E-03
126	GO:0016575: histone deacetylation	9.69E-03
127	GO:0009695: jasmonic acid biosynthetic process	9.69E-03
128	GO:0003333: amino acid transmembrane transport	1.03E-02
129	GO:0010227: floral organ abscission	1.17E-02
130	GO:0071215: cellular response to abscisic acid stimulus	1.17E-02
131	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	1.32E-02
132	GO:0042147: retrograde transport, endosome to Golgi	1.32E-02
133	GO:0042744: hydrogen peroxide catabolic process	1.33E-02
134	GO:0000226: microtubule cytoskeleton organization	1.39E-02
135	GO:0042391: regulation of membrane potential	1.39E-02
136	GO:0010501: RNA secondary structure unwinding	1.39E-02
137	GO:0010087: phloem or xylem histogenesis	1.39E-02
138	GO:0016036: cellular response to phosphate starvation	1.51E-02
139	GO:0006814: sodium ion transport	1.54E-02
140	GO:0008654: phospholipid biosynthetic process	1.62E-02
141	GO:0009556: microsporogenesis	1.62E-02
142	GO:0010228: vegetative to reproductive phase transition of meristem	1.69E-02
143	GO:0006635: fatty acid beta-oxidation	1.70E-02
144	GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process	1.81E-02
145	GO:0009739: response to gibberellin	1.81E-02
146	GO:1901657: glycosyl compound metabolic process	1.87E-02
147	GO:0006914: autophagy	1.95E-02
148	GO:0015031: protein transport	2.12E-02
149	GO:0009911: positive regulation of flower development	2.21E-02
150	GO:0010029: regulation of seed germination	2.30E-02
151	GO:0045944: positive regulation of transcription from RNA polymerase II promoter	2.32E-02
152	GO:0009826: unidimensional cell growth	2.41E-02
153	GO:0048573: photoperiodism, flowering	2.48E-02
154	GO:0006950: response to stress	2.48E-02
155	GO:0016049: cell growth	2.58E-02
156	GO:0009817: defense response to fungus, incompatible interaction	2.67E-02
157	GO:0048481: plant ovule development	2.67E-02
158	GO:0010311: lateral root formation	2.77E-02
159	GO:0007049: cell cycle	2.80E-02
160	GO:0046686: response to cadmium ion	2.86E-02
161	GO:0006811: ion transport	2.87E-02
162	GO:0009910: negative regulation of flower development	2.96E-02
163	GO:0006952: defense response	3.00E-02
164	GO:0016192: vesicle-mediated transport	3.27E-02
165	GO:0006839: mitochondrial transport	3.47E-02
166	GO:0045892: negative regulation of transcription, DNA-templated	3.78E-02
167	GO:0009640: photomorphogenesis	3.79E-02
168	GO:0009926: auxin polar transport	3.79E-02
169	GO:0000165: MAPK cascade	4.34E-02
170	GO:0042538: hyperosmotic salinity response	4.45E-02
171	GO:0006812: cation transport	4.45E-02
172	GO:0006364: rRNA processing	4.68E-02

Rank	GO Term	Adjusted P value
1	GO:0047668: amygdalin beta-glucosidase activity	0.00E+00
2	GO:0019912: cyclin-dependent protein kinase activating kinase activity	0.00E+00
3	GO:1990446: U1 snRNP binding	0.00E+00
4	GO:0080083: beta-gentiobiose beta-glucosidase activity	0.00E+00
5	GO:0030504: inorganic diphosphate transmembrane transporter activity	0.00E+00
6	GO:0080082: esculin beta-glucosidase activity	0.00E+00
7	GO:0010292: GTP:GDP antiporter activity	0.00E+00
8	GO:0004567: beta-mannosidase activity	0.00E+00
9	GO:0080081: 4-methylumbelliferyl-beta-D-glucopyranoside beta-glucosidase activity	0.00E+00
10	GO:0016428: tRNA (cytosine-5-)-methyltransferase activity	0.00E+00
11	GO:0031409: pigment binding	4.97E-13
12	GO:0016168: chlorophyll binding	1.69E-10
13	GO:0004096: catalase activity	5.37E-06
14	GO:0005086: ARF guanyl-nucleotide exchange factor activity	2.30E-05
15	GO:0005253: anion channel activity	2.30E-05
16	GO:0000829: inositol heptakisphosphate kinase activity	1.73E-04
17	GO:0010013: N-1-naphthylphthalamic acid binding	1.73E-04
18	GO:0080079: cellobiose glucosidase activity	1.73E-04
19	GO:0008692: 3-hydroxybutyryl-CoA epimerase activity	1.73E-04
20	GO:0000828: inositol hexakisphosphate kinase activity	1.73E-04
21	GO:0070006: metalloaminopeptidase activity	1.73E-04
22	GO:0015185: gamma-aminobutyric acid transmembrane transporter activity	1.73E-04
23	GO:0033857: diphosphoinositol-pentakisphosphate kinase activity	1.73E-04
24	GO:0005515: protein binding	2.97E-04
25	GO:0004609: phosphatidylserine decarboxylase activity	3.92E-04
26	GO:0047216: inositol 3-alpha-galactosyltransferase activity	3.92E-04
27	GO:0003857: 3-hydroxyacyl-CoA dehydrogenase activity	3.92E-04
28	GO:0015180: L-alanine transmembrane transporter activity	3.92E-04
29	GO:0001047: core promoter binding	3.92E-04
30	GO:0031624: ubiquitin conjugating enzyme binding	4.87E-04
31	GO:0046592: polyamine oxidase activity	6.40E-04
32	GO:0019948: SUMO activating enzyme activity	6.40E-04
33	GO:0004707: MAP kinase activity	8.10E-04
34	GO:0004300: enoyl-CoA hydratase activity	9.13E-04
35	GO:0015189: L-lysine transmembrane transporter activity	9.13E-04
36	GO:0000285: 1-phosphatidylinositol-3-phosphate 5-kinase activity	9.13E-04
37	GO:0015181: arginine transmembrane transporter activity	9.13E-04
38	GO:0004165: dodecenoyl-CoA delta-isomerase activity	9.13E-04
39	GO:0046872: metal ion binding	9.62E-04
40	GO:0005313: L-glutamate transmembrane transporter activity	1.21E-03
41	GO:0008526: phosphatidylinositol transporter activity	1.21E-03
42	GO:0042277: peptide binding	1.21E-03
43	GO:0061630: ubiquitin protein ligase activity	1.27E-03
44	GO:0016929: SUMO-specific protease activity	1.54E-03
45	GO:0045300: acyl-[acyl-carrier-protein] desaturase activity	1.54E-03
46	GO:0000156: phosphorelay response regulator activity	1.82E-03
47	GO:0005247: voltage-gated chloride channel activity	1.89E-03
48	GO:2001070: starch binding	1.89E-03
49	GO:0004629: phospholipase C activity	1.89E-03
50	GO:0015562: efflux transmembrane transporter activity	1.89E-03
51	GO:0000293: ferric-chelate reductase activity	1.89E-03
52	GO:0031369: translation initiation factor binding	1.89E-03
53	GO:0004849: uridine kinase activity	2.27E-03
54	GO:0003950: NAD+ ADP-ribosyltransferase activity	2.27E-03
55	GO:0004435: phosphatidylinositol phospholipase C activity	2.27E-03
56	GO:0009881: photoreceptor activity	2.67E-03
57	GO:0015140: malate transmembrane transporter activity	2.67E-03
58	GO:0004693: cyclin-dependent protein serine/threonine kinase activity	3.29E-03
59	GO:0050897: cobalt ion binding	3.45E-03
60	GO:0032041: NAD-dependent histone deacetylase activity (H3-K14 specific)	3.54E-03
61	GO:0008353: RNA polymerase II carboxy-terminal domain kinase activity	3.54E-03
62	GO:0003697: single-stranded DNA binding	3.78E-03
63	GO:0009815: 1-aminocyclopropane-1-carboxylate oxidase activity	4.00E-03
64	GO:0016308: 1-phosphatidylinositol-4-phosphate 5-kinase activity	4.99E-03
65	GO:0015020: glucuronosyltransferase activity	4.99E-03
66	GO:0004177: aminopeptidase activity	5.52E-03
67	GO:0019888: protein phosphatase regulator activity	6.61E-03
68	GO:0000175: 3'-5'-exoribonuclease activity	6.61E-03
69	GO:0005315: inorganic phosphate transmembrane transporter activity	6.61E-03
70	GO:0004175: endopeptidase activity	7.20E-03
71	GO:0008131: primary amine oxidase activity	7.20E-03
72	GO:0030552: cAMP binding	7.79E-03
73	GO:0030553: cGMP binding	7.79E-03
74	GO:0004722: protein serine/threonine phosphatase activity	8.77E-03
75	GO:0004407: histone deacetylase activity	9.03E-03
76	GO:0005216: ion channel activity	9.69E-03
77	GO:0008324: cation transmembrane transporter activity	9.69E-03
78	GO:0004540: ribonuclease activity	1.03E-02
79	GO:0019706: protein-cysteine S-palmitoyltransferase activity	1.03E-02
80	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	1.20E-02
81	GO:0008514: organic anion transmembrane transporter activity	1.24E-02
82	GO:0003727: single-stranded RNA binding	1.24E-02
83	GO:0005249: voltage-gated potassium channel activity	1.39E-02
84	GO:0030551: cyclic nucleotide binding	1.39E-02
85	GO:0016538: cyclin-dependent protein serine/threonine kinase regulator activity	1.47E-02
86	GO:0015297: antiporter activity	1.54E-02
87	GO:0005351: sugar:proton symporter activity	1.58E-02
88	GO:0008375: acetylglucosaminyltransferase activity	2.39E-02
89	GO:0102483: scopolin beta-glucosidase activity	2.48E-02
90	GO:0003729: mRNA binding	2.68E-02
91	GO:0003677: DNA binding	2.73E-02
92	GO:0005096: GTPase activator activity	2.77E-02
93	GO:0020037: heme binding	2.92E-02
94	GO:0004497: monooxygenase activity	3.11E-02
95	GO:0008422: beta-glucosidase activity	3.37E-02
96	GO:0042393: histone binding	3.47E-02
97	GO:0005516: calmodulin binding	3.51E-02
98	GO:0005198: structural molecule activity	4.12E-02
99	GO:0015293: symporter activity	4.12E-02
100	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	4.68E-02
101	GO:0003690: double-stranded DNA binding	4.80E-02

Rank	GO Term	Adjusted P value
1	GO:0031981: nuclear lumen	0.00E+00
2	GO:0071008: U2-type post-mRNA release spliceosomal complex	0.00E+00
3	GO:0030076: light-harvesting complex	4.37E-11
4	GO:0009522: photosystem I	1.39E-09
5	GO:0010287: plastoglobule	5.16E-08
6	GO:0009523: photosystem II	1.05E-07
7	GO:0005777: peroxisome	7.30E-07
8	GO:0009579: thylakoid	8.78E-06
9	GO:0009534: chloroplast thylakoid	6.96E-05
10	GO:0000932: P-body	2.25E-04
11	GO:0009941: chloroplast envelope	3.20E-04
12	GO:0043036: starch grain	3.92E-04
13	GO:0009535: chloroplast thylakoid membrane	4.84E-04
14	GO:0042651: thylakoid membrane	7.39E-04
15	GO:0032586: protein storage vacuole membrane	1.21E-03
16	GO:0009517: PSII associated light-harvesting complex II	1.21E-03
17	GO:0005776: autophagosome	1.21E-03
18	GO:0000178: exosome (RNase complex)	1.54E-03
19	GO:0034707: chloride channel complex	1.89E-03
20	GO:0016363: nuclear matrix	2.27E-03
21	GO:0005802: trans-Golgi network	2.70E-03
22	GO:0000151: ubiquitin ligase complex	2.99E-03
23	GO:0034399: nuclear periphery	3.09E-03
24	GO:0000307: cyclin-dependent protein kinase holoenzyme complex	3.54E-03
25	GO:0000326: protein storage vacuole	3.54E-03
26	GO:0010494: cytoplasmic stress granule	4.00E-03
27	GO:0031090: organelle membrane	4.00E-03
28	GO:0000159: protein phosphatase type 2A complex	5.52E-03
29	GO:0005618: cell wall	5.61E-03
30	GO:0005665: DNA-directed RNA polymerase II, core complex	6.06E-03
31	GO:0031966: mitochondrial membrane	6.10E-03
32	GO:0010008: endosome membrane	8.00E-03
33	GO:0016021: integral component of membrane	9.89E-03
34	GO:0031410: cytoplasmic vesicle	1.10E-02
35	GO:0005622: intracellular	1.22E-02
36	GO:0009507: chloroplast	1.26E-02
37	GO:0005783: endoplasmic reticulum	1.87E-02
38	GO:0022626: cytosolic ribosome	1.99E-02
39	GO:0016020: membrane	3.01E-02
40	GO:0000786: nucleosome	3.06E-02
41	GO:0005886: plasma membrane	3.77E-02
42	GO:0005829: cytosol	3.99E-02