co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT2G22230

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0002184: cytoplasmic translational termination	0.00E+00
2	GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation	0.00E+00
3	GO:0006428: isoleucyl-tRNA aminoacylation	0.00E+00
4	GO:0070455: positive regulation of heme biosynthetic process	0.00E+00
5	GO:0016553: base conversion or substitution editing	0.00E+00
6	GO:0015805: S-adenosyl-L-methionine transport	0.00E+00
7	GO:1905499: trichome papilla formation	0.00E+00
8	GO:0070125: mitochondrial translational elongation	0.00E+00
9	GO:0006412: translation	3.73E-09
10	GO:0032544: plastid translation	1.35E-08
11	GO:0009658: chloroplast organization	6.77E-06
12	GO:0042254: ribosome biogenesis	7.15E-06
13	GO:0009735: response to cytokinin	1.20E-04
14	GO:0009828: plant-type cell wall loosening	1.25E-04
15	GO:0043489: RNA stabilization	1.46E-04
16	GO:0010442: guard cell morphogenesis	1.46E-04
17	GO:0042371: vitamin K biosynthetic process	1.46E-04
18	GO:0006783: heme biosynthetic process	1.56E-04
19	GO:0045454: cell redox homeostasis	1.82E-04
20	GO:0015995: chlorophyll biosynthetic process	2.03E-04
21	GO:0006949: syncytium formation	2.22E-04
22	GO:0052541: plant-type cell wall cellulose metabolic process	3.33E-04
23	GO:0010069: zygote asymmetric cytokinesis in embryo sac	3.33E-04
24	GO:0006729: tetrahydrobiopterin biosynthetic process	3.33E-04
25	GO:0010424: DNA methylation on cytosine within a CG sequence	3.33E-04
26	GO:0010581: regulation of starch biosynthetic process	5.47E-04
27	GO:0009826: unidimensional cell growth	5.61E-04
28	GO:0009664: plant-type cell wall organization	5.96E-04
29	GO:0042742: defense response to bacterium	6.64E-04
30	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	7.64E-04
31	GO:0051085: chaperone mediated protein folding requiring cofactor	7.83E-04
32	GO:0006241: CTP biosynthetic process	7.83E-04
33	GO:0019048: modulation by virus of host morphology or physiology	7.83E-04
34	GO:0006165: nucleoside diphosphate phosphorylation	7.83E-04
35	GO:0006228: UTP biosynthetic process	7.83E-04
36	GO:0031048: chromatin silencing by small RNA	7.83E-04
37	GO:0033014: tetrapyrrole biosynthetic process	7.83E-04
38	GO:0006424: glutamyl-tRNA aminoacylation	7.83E-04
39	GO:0043572: plastid fission	7.83E-04
40	GO:0006986: response to unfolded protein	7.83E-04
41	GO:0019722: calcium-mediated signaling	8.29E-04
42	GO:0042335: cuticle development	9.62E-04
43	GO:0015979: photosynthesis	1.00E-03
44	GO:0015689: molybdate ion transport	1.04E-03
45	GO:0009765: photosynthesis, light harvesting	1.04E-03
46	GO:0006183: GTP biosynthetic process	1.04E-03
47	GO:0051567: histone H3-K9 methylation	1.04E-03
48	GO:2000122: negative regulation of stomatal complex development	1.04E-03
49	GO:0010037: response to carbon dioxide	1.04E-03
50	GO:0015976: carbon utilization	1.04E-03
51	GO:0055114: oxidation-reduction process	1.06E-03
52	GO:0009409: response to cold	1.20E-03
53	GO:0006665: sphingolipid metabolic process	1.31E-03
54	GO:0048359: mucilage metabolic process involved in seed coat development	1.31E-03
55	GO:0016120: carotene biosynthetic process	1.31E-03
56	GO:0032543: mitochondrial translation	1.31E-03
57	GO:0006564: L-serine biosynthetic process	1.31E-03
58	GO:0010236: plastoquinone biosynthetic process	1.31E-03
59	GO:0016123: xanthophyll biosynthetic process	1.31E-03
60	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	1.61E-03
61	GO:0016458: gene silencing	1.61E-03
62	GO:0007267: cell-cell signaling	1.62E-03
63	GO:0010027: thylakoid membrane organization	1.81E-03
64	GO:0009955: adaxial/abaxial pattern specification	1.93E-03
65	GO:1901259: chloroplast rRNA processing	1.93E-03
66	GO:0006694: steroid biosynthetic process	1.93E-03
67	GO:0010189: vitamin E biosynthetic process	1.93E-03
68	GO:0010555: response to mannitol	1.93E-03
69	GO:0009817: defense response to fungus, incompatible interaction	2.36E-03
70	GO:0009834: plant-type secondary cell wall biogenesis	2.60E-03
71	GO:0009642: response to light intensity	2.63E-03
72	GO:0030091: protein repair	2.63E-03
73	GO:0042255: ribosome assembly	2.63E-03
74	GO:0006353: DNA-templated transcription, termination	2.63E-03
75	GO:0019430: removal of superoxide radicals	3.00E-03
76	GO:0006526: arginine biosynthetic process	3.00E-03
77	GO:0009808: lignin metabolic process	3.00E-03
78	GO:0006839: mitochondrial transport	3.39E-03
79	GO:0015780: nucleotide-sugar transport	3.40E-03
80	GO:0006779: porphyrin-containing compound biosynthetic process	3.81E-03
81	GO:0010380: regulation of chlorophyll biosynthetic process	3.81E-03
82	GO:0042761: very long-chain fatty acid biosynthetic process	3.81E-03
83	GO:0006349: regulation of gene expression by genetic imprinting	3.81E-03
84	GO:0006782: protoporphyrinogen IX biosynthetic process	4.23E-03
85	GO:0030422: production of siRNA involved in RNA interference	4.23E-03
86	GO:0045036: protein targeting to chloroplast	4.23E-03
87	GO:0006415: translational termination	4.67E-03
88	GO:0043085: positive regulation of catalytic activity	4.67E-03
89	GO:0018119: peptidyl-cysteine S-nitrosylation	4.67E-03
90	GO:0010216: maintenance of DNA methylation	4.67E-03
91	GO:0006457: protein folding	5.21E-03
92	GO:0009767: photosynthetic electron transport chain	5.60E-03
93	GO:0010020: chloroplast fission	6.09E-03
94	GO:0010207: photosystem II assembly	6.09E-03
95	GO:0009969: xyloglucan biosynthetic process	6.59E-03
96	GO:0010025: wax biosynthetic process	7.10E-03
97	GO:0006071: glycerol metabolic process	7.10E-03
98	GO:0019344: cysteine biosynthetic process	7.63E-03
99	GO:0000027: ribosomal large subunit assembly	7.63E-03
100	GO:0019953: sexual reproduction	8.18E-03
101	GO:0006418: tRNA aminoacylation for protein translation	8.18E-03
102	GO:0010026: trichome differentiation	8.18E-03
103	GO:0009768: photosynthesis, light harvesting in photosystem I	8.18E-03
104	GO:0006306: DNA methylation	8.73E-03
105	GO:0009294: DNA mediated transformation	9.89E-03
106	GO:0009411: response to UV	9.89E-03
107	GO:0010091: trichome branching	1.05E-02
108	GO:0009790: embryo development	1.07E-02
109	GO:0016117: carotenoid biosynthetic process	1.11E-02
110	GO:0006633: fatty acid biosynthetic process	1.15E-02
111	GO:0008033: tRNA processing	1.17E-02
112	GO:0000413: protein peptidyl-prolyl isomerization	1.17E-02
113	GO:0006520: cellular amino acid metabolic process	1.24E-02
114	GO:0006342: chromatin silencing	1.24E-02
115	GO:0009791: post-embryonic development	1.37E-02
116	GO:0016132: brassinosteroid biosynthetic process	1.43E-02
117	GO:0010583: response to cyclopentenone	1.50E-02
118	GO:0016032: viral process	1.50E-02
119	GO:0032502: developmental process	1.50E-02
120	GO:0051607: defense response to virus	1.79E-02
121	GO:0009816: defense response to bacterium, incompatible interaction	1.94E-02
122	GO:0046686: response to cadmium ion	2.00E-02
123	GO:0055085: transmembrane transport	2.10E-02
124	GO:0048481: plant ovule development	2.25E-02
125	GO:0018298: protein-chromophore linkage	2.25E-02
126	GO:0009813: flavonoid biosynthetic process	2.33E-02
127	GO:0010218: response to far red light	2.41E-02
128	GO:0009631: cold acclimation	2.49E-02
129	GO:0010119: regulation of stomatal movement	2.49E-02
130	GO:0009910: negative regulation of flower development	2.49E-02
131	GO:0006414: translational elongation	2.56E-02
132	GO:0045087: innate immune response	2.66E-02
133	GO:0009637: response to blue light	2.66E-02
134	GO:0006631: fatty acid metabolic process	3.01E-02
135	GO:0042542: response to hydrogen peroxide	3.10E-02
136	GO:0010114: response to red light	3.19E-02
137	GO:0006869: lipid transport	3.20E-02
138	GO:0008643: carbohydrate transport	3.37E-02
139	GO:0009793: embryo development ending in seed dormancy	3.57E-02
140	GO:0006629: lipid metabolic process	3.60E-02
141	GO:0009809: lignin biosynthetic process	3.94E-02
142	GO:0006364: rRNA processing	3.94E-02
143	GO:0009585: red, far-red light phototransduction	3.94E-02
144	GO:0051603: proteolysis involved in cellular protein catabolic process	4.04E-02
145	GO:0006417: regulation of translation	4.24E-02
146	GO:0016569: covalent chromatin modification	4.85E-02

Rank	GO Term	Adjusted P value
1	GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity	0.00E+00
2	GO:0050518: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity	0.00E+00
3	GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity	0.00E+00
4	GO:0045435: lycopene epsilon cyclase activity	0.00E+00
5	GO:0004822: isoleucine-tRNA ligase activity	0.00E+00
6	GO:0019166: trans-2-enoyl-CoA reductase (NADPH) activity	0.00E+00
7	GO:0102550: 2-methyl-6-geranylgeranyl-1,4-benzoquinol methyltransferase activity	0.00E+00
8	GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity	0.00E+00
9	GO:0050614: delta24-sterol reductase activity	0.00E+00
10	GO:0019843: rRNA binding	2.44E-16
11	GO:0003735: structural constituent of ribosome	6.21E-10
12	GO:0051920: peroxiredoxin activity	2.21E-09
13	GO:0016209: antioxidant activity	7.94E-09
14	GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity	1.46E-04
15	GO:0004655: porphobilinogen synthase activity	1.46E-04
16	GO:0008124: 4-alpha-hydroxytetrahydrobiopterin dehydratase activity	1.46E-04
17	GO:0009374: biotin binding	1.46E-04
18	GO:0051741: 2-methyl-6-phytyl-1,4-benzoquinone methyltransferase activity	1.46E-04
19	GO:0003942: N-acetyl-gamma-glutamyl-phosphate reductase activity	1.46E-04
20	GO:0047381: dodecanoyl-[acyl-carrier-protein] hydrolase activity	1.46E-04
21	GO:0003746: translation elongation factor activity	3.21E-04
22	GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity	3.33E-04
23	GO:0019171: 3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity	3.33E-04
24	GO:0004617: phosphoglycerate dehydrogenase activity	3.33E-04
25	GO:0008266: poly(U) RNA binding	3.85E-04
26	GO:0002161: aminoacyl-tRNA editing activity	5.47E-04
27	GO:0004148: dihydrolipoyl dehydrogenase activity	5.47E-04
28	GO:0005504: fatty acid binding	5.47E-04
29	GO:0030267: glyoxylate reductase (NADP) activity	5.47E-04
30	GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	5.47E-04
31	GO:0016296: palmitoyl-[acyl-carrier-protein] hydrolase activity	5.47E-04
32	GO:0016295: myristoyl-[acyl-carrier-protein] hydrolase activity	5.47E-04
33	GO:0004601: peroxidase activity	5.94E-04
34	GO:0035197: siRNA binding	7.83E-04
35	GO:0016149: translation release factor activity, codon specific	7.83E-04
36	GO:0003865: 3-oxo-5-alpha-steroid 4-dehydrogenase activity	7.83E-04
37	GO:0004550: nucleoside diphosphate kinase activity	7.83E-04
38	GO:0043023: ribosomal large subunit binding	7.83E-04
39	GO:0051082: unfolded protein binding	1.01E-03
40	GO:0015098: molybdate ion transmembrane transporter activity	1.04E-03
41	GO:0045430: chalcone isomerase activity	1.04E-03
42	GO:0043495: protein anchor	1.04E-03
43	GO:0016836: hydro-lyase activity	1.04E-03
44	GO:0009922: fatty acid elongase activity	1.31E-03
45	GO:0016773: phosphotransferase activity, alcohol group as acceptor	1.31E-03
46	GO:0003989: acetyl-CoA carboxylase activity	1.31E-03
47	GO:0033743: peptide-methionine (R)-S-oxide reductase activity	1.93E-03
48	GO:0003886: DNA (cytosine-5-)-methyltransferase activity	1.93E-03
49	GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity	1.93E-03
50	GO:0004033: aldo-keto reductase (NADP) activity	2.63E-03
51	GO:0052747: sinapyl alcohol dehydrogenase activity	2.63E-03
52	GO:0016627: oxidoreductase activity, acting on the CH-CH group of donors	3.40E-03
53	GO:0008889: glycerophosphodiester phosphodiesterase activity	3.40E-03
54	GO:0003747: translation release factor activity	3.40E-03
55	GO:0047617: acyl-CoA hydrolase activity	3.81E-03
56	GO:0008047: enzyme activator activity	4.23E-03
57	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	4.46E-03
58	GO:0051287: NAD binding	4.63E-03
59	GO:0008378: galactosyltransferase activity	5.13E-03
60	GO:0004521: endoribonuclease activity	5.13E-03
61	GO:0000049: tRNA binding	5.13E-03
62	GO:0045551: cinnamyl-alcohol dehydrogenase activity	5.13E-03
63	GO:0004565: beta-galactosidase activity	5.60E-03
64	GO:0004089: carbonate dehydratase activity	5.60E-03
65	GO:0031072: heat shock protein binding	5.60E-03
66	GO:0031409: pigment binding	7.10E-03
67	GO:0051087: chaperone binding	8.18E-03
68	GO:0004176: ATP-dependent peptidase activity	8.73E-03
69	GO:0030570: pectate lyase activity	9.89E-03
70	GO:0003727: single-stranded RNA binding	1.05E-02
71	GO:0008514: organic anion transmembrane transporter activity	1.05E-02
72	GO:0004812: aminoacyl-tRNA ligase activity	1.11E-02
73	GO:0008080: N-acetyltransferase activity	1.24E-02
74	GO:0010181: FMN binding	1.30E-02
75	GO:0004791: thioredoxin-disulfide reductase activity	1.30E-02
76	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	1.57E-02
77	GO:0008237: metallopeptidase activity	1.72E-02
78	GO:0016597: amino acid binding	1.79E-02
79	GO:0008168: methyltransferase activity	1.89E-02
80	GO:0016168: chlorophyll binding	1.94E-02
81	GO:0003682: chromatin binding	2.08E-02
82	GO:0008757: S-adenosylmethionine-dependent methyltransferase activity	2.17E-02
83	GO:0004222: metalloendopeptidase activity	2.41E-02
84	GO:0005507: copper ion binding	2.42E-02
85	GO:0016614: oxidoreductase activity, acting on CH-OH group of donors	2.49E-02
86	GO:0030145: manganese ion binding	2.49E-02
87	GO:0005516: calmodulin binding	2.59E-02
88	GO:0004871: signal transducer activity	3.06E-02
89	GO:0004185: serine-type carboxypeptidase activity	3.19E-02
90	GO:0051537: 2 iron, 2 sulfur cluster binding	3.37E-02
91	GO:0003690: double-stranded DNA binding	4.04E-02
92	GO:0045735: nutrient reservoir activity	4.44E-02
93	GO:0022857: transmembrane transporter activity	4.85E-02
94	GO:0008289: lipid binding	4.98E-02

Rank	GO Term	Adjusted P value
1	GO:0009570: chloroplast stroma	1.39E-39
2	GO:0009507: chloroplast	2.10E-33
3	GO:0009941: chloroplast envelope	1.86E-29
4	GO:0009579: thylakoid	4.34E-12
5	GO:0005840: ribosome	2.16E-09
6	GO:0048046: apoplast	1.73E-06
7	GO:0009534: chloroplast thylakoid	3.78E-06
8	GO:0009505: plant-type cell wall	6.67E-06
9	GO:0000311: plastid large ribosomal subunit	8.30E-06
10	GO:0009535: chloroplast thylakoid membrane	9.14E-06
11	GO:0009536: plastid	4.45E-05
12	GO:0010319: stromule	1.36E-04
13	GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex	1.46E-04
14	GO:0009923: fatty acid elongase complex	1.46E-04
15	GO:0009547: plastid ribosome	1.46E-04
16	GO:0016020: membrane	2.97E-04
17	GO:0046658: anchored component of plasma membrane	4.67E-04
18	GO:0009317: acetyl-CoA carboxylase complex	5.47E-04
19	GO:0005853: eukaryotic translation elongation factor 1 complex	5.47E-04
20	GO:0022626: cytosolic ribosome	7.15E-04
21	GO:0005719: nuclear euchromatin	7.83E-04
22	GO:0009706: chloroplast inner membrane	1.01E-03
23	GO:0030529: intracellular ribonucleoprotein complex	1.81E-03
24	GO:0009533: chloroplast stromal thylakoid	2.27E-03
25	GO:0009539: photosystem II reaction center	3.00E-03
26	GO:0005763: mitochondrial small ribosomal subunit	3.40E-03
27	GO:0015030: Cajal body	3.81E-03
28	GO:0031969: chloroplast membrane	4.56E-03
29	GO:0022625: cytosolic large ribosomal subunit	4.86E-03
30	GO:0000312: plastid small ribosomal subunit	6.09E-03
31	GO:0030076: light-harvesting complex	6.59E-03
32	GO:0005743: mitochondrial inner membrane	6.82E-03
33	GO:0043234: protein complex	7.10E-03
34	GO:0005875: microtubule associated complex	7.10E-03
35	GO:0009654: photosystem II oxygen evolving complex	8.18E-03
36	GO:0042651: thylakoid membrane	8.18E-03
37	GO:0010287: plastoglobule	8.69E-03
38	GO:0015935: small ribosomal subunit	8.73E-03
39	GO:0009532: plastid stroma	8.73E-03
40	GO:0009543: chloroplast thylakoid lumen	9.17E-03
41	GO:0005759: mitochondrial matrix	1.15E-02
42	GO:0009522: photosystem I	1.30E-02
43	GO:0015934: large ribosomal subunit	2.49E-02
44	GO:0031225: anchored component of membrane	2.71E-02
45	GO:0005618: cell wall	2.86E-02
46	GO:0031977: thylakoid lumen	3.01E-02