GO Enrichment Analysis of Co-expressed Genes with
AT2G21960
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0051484: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway involved in terpenoid biosynthetic process | 0.00E+00 |
| 2 | GO:0098586: cellular response to virus | 0.00E+00 |
| 3 | GO:0090470: shoot organ boundary specification | 0.00E+00 |
| 4 | GO:0061635: regulation of protein complex stability | 0.00E+00 |
| 5 | GO:0017009: protein-phycocyanobilin linkage | 0.00E+00 |
| 6 | GO:0010027: thylakoid membrane organization | 4.39E-08 |
| 7 | GO:0009773: photosynthetic electron transport in photosystem I | 2.59E-06 |
| 8 | GO:0010021: amylopectin biosynthetic process | 8.78E-06 |
| 9 | GO:0015994: chlorophyll metabolic process | 8.78E-06 |
| 10 | GO:0010304: PSII associated light-harvesting complex II catabolic process | 2.21E-05 |
| 11 | GO:0033481: galacturonate biosynthetic process | 9.88E-05 |
| 12 | GO:0065002: intracellular protein transmembrane transport | 9.88E-05 |
| 13 | GO:0043686: co-translational protein modification | 9.88E-05 |
| 14 | GO:0005991: trehalose metabolic process | 9.88E-05 |
| 15 | GO:0043953: protein transport by the Tat complex | 9.88E-05 |
| 16 | GO:0010205: photoinhibition | 1.06E-04 |
| 17 | GO:0016122: xanthophyll metabolic process | 2.32E-04 |
| 18 | GO:0010275: NAD(P)H dehydrogenase complex assembly | 2.32E-04 |
| 19 | GO:0046741: transport of virus in host, tissue to tissue | 2.32E-04 |
| 20 | GO:0009915: phloem sucrose loading | 2.32E-04 |
| 21 | GO:0080005: photosystem stoichiometry adjustment | 2.32E-04 |
| 22 | GO:0010115: regulation of abscisic acid biosynthetic process | 2.32E-04 |
| 23 | GO:0016050: vesicle organization | 3.86E-04 |
| 24 | GO:0090391: granum assembly | 3.86E-04 |
| 25 | GO:0010371: regulation of gibberellin biosynthetic process | 5.54E-04 |
| 26 | GO:0009152: purine ribonucleotide biosynthetic process | 5.54E-04 |
| 27 | GO:0046653: tetrahydrofolate metabolic process | 5.54E-04 |
| 28 | GO:0043572: plastid fission | 5.54E-04 |
| 29 | GO:0010182: sugar mediated signaling pathway | 6.24E-04 |
| 30 | GO:0019252: starch biosynthetic process | 7.16E-04 |
| 31 | GO:0045727: positive regulation of translation | 7.37E-04 |
| 32 | GO:0008152: metabolic process | 7.66E-04 |
| 33 | GO:0031365: N-terminal protein amino acid modification | 9.32E-04 |
| 34 | GO:0016120: carotene biosynthetic process | 9.32E-04 |
| 35 | GO:0080110: sporopollenin biosynthetic process | 9.32E-04 |
| 36 | GO:0006564: L-serine biosynthetic process | 9.32E-04 |
| 37 | GO:0006561: proline biosynthetic process | 1.14E-03 |
| 38 | GO:0042549: photosystem II stabilization | 1.14E-03 |
| 39 | GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway | 1.14E-03 |
| 40 | GO:0010189: vitamin E biosynthetic process | 1.36E-03 |
| 41 | GO:0009772: photosynthetic electron transport in photosystem II | 1.59E-03 |
| 42 | GO:0010196: nonphotochemical quenching | 1.59E-03 |
| 43 | GO:0050829: defense response to Gram-negative bacterium | 1.59E-03 |
| 44 | GO:1900057: positive regulation of leaf senescence | 1.59E-03 |
| 45 | GO:0006400: tRNA modification | 1.59E-03 |
| 46 | GO:0048564: photosystem I assembly | 1.84E-03 |
| 47 | GO:0005978: glycogen biosynthetic process | 1.84E-03 |
| 48 | GO:0070413: trehalose metabolism in response to stress | 1.84E-03 |
| 49 | GO:0015996: chlorophyll catabolic process | 2.10E-03 |
| 50 | GO:0032544: plastid translation | 2.10E-03 |
| 51 | GO:0000373: Group II intron splicing | 2.37E-03 |
| 52 | GO:0010206: photosystem II repair | 2.37E-03 |
| 53 | GO:0034765: regulation of ion transmembrane transport | 2.37E-03 |
| 54 | GO:0005982: starch metabolic process | 2.65E-03 |
| 55 | GO:0009688: abscisic acid biosynthetic process | 2.95E-03 |
| 56 | GO:0006364: rRNA processing | 3.04E-03 |
| 57 | GO:0008285: negative regulation of cell proliferation | 3.25E-03 |
| 58 | GO:0009750: response to fructose | 3.25E-03 |
| 59 | GO:0032259: methylation | 3.60E-03 |
| 60 | GO:0009767: photosynthetic electron transport chain | 3.89E-03 |
| 61 | GO:0010628: positive regulation of gene expression | 3.89E-03 |
| 62 | GO:0009266: response to temperature stimulus | 4.22E-03 |
| 63 | GO:0010020: chloroplast fission | 4.22E-03 |
| 64 | GO:0010207: photosystem II assembly | 4.22E-03 |
| 65 | GO:0090351: seedling development | 4.57E-03 |
| 66 | GO:0009225: nucleotide-sugar metabolic process | 4.57E-03 |
| 67 | GO:0006636: unsaturated fatty acid biosynthetic process | 4.92E-03 |
| 68 | GO:0005992: trehalose biosynthetic process | 5.28E-03 |
| 69 | GO:0010073: meristem maintenance | 5.65E-03 |
| 70 | GO:0051302: regulation of cell division | 5.65E-03 |
| 71 | GO:0008299: isoprenoid biosynthetic process | 5.65E-03 |
| 72 | GO:0007017: microtubule-based process | 5.65E-03 |
| 73 | GO:0009695: jasmonic acid biosynthetic process | 5.65E-03 |
| 74 | GO:0031408: oxylipin biosynthetic process | 6.03E-03 |
| 75 | GO:0055114: oxidation-reduction process | 6.30E-03 |
| 76 | GO:0035428: hexose transmembrane transport | 6.42E-03 |
| 77 | GO:0010227: floral organ abscission | 6.82E-03 |
| 78 | GO:0009735: response to cytokinin | 7.02E-03 |
| 79 | GO:0010584: pollen exine formation | 7.23E-03 |
| 80 | GO:0009561: megagametogenesis | 7.23E-03 |
| 81 | GO:0016117: carotenoid biosynthetic process | 7.64E-03 |
| 82 | GO:0000413: protein peptidyl-prolyl isomerization | 8.07E-03 |
| 83 | GO:0042391: regulation of membrane potential | 8.07E-03 |
| 84 | GO:0006810: transport | 8.15E-03 |
| 85 | GO:0046323: glucose import | 8.50E-03 |
| 86 | GO:0015986: ATP synthesis coupled proton transport | 8.94E-03 |
| 87 | GO:0000302: response to reactive oxygen species | 9.85E-03 |
| 88 | GO:0016032: viral process | 1.03E-02 |
| 89 | GO:0019761: glucosinolate biosynthetic process | 1.03E-02 |
| 90 | GO:0009567: double fertilization forming a zygote and endosperm | 1.13E-02 |
| 91 | GO:0071805: potassium ion transmembrane transport | 1.18E-02 |
| 92 | GO:0015995: chlorophyll biosynthetic process | 1.43E-02 |
| 93 | GO:0009832: plant-type cell wall biogenesis | 1.60E-02 |
| 94 | GO:0015979: photosynthesis | 1.63E-02 |
| 95 | GO:0009853: photorespiration | 1.82E-02 |
| 96 | GO:0006631: fatty acid metabolic process | 2.06E-02 |
| 97 | GO:0009640: photomorphogenesis | 2.18E-02 |
| 98 | GO:0009644: response to high light intensity | 2.31E-02 |
| 99 | GO:0031347: regulation of defense response | 2.50E-02 |
| 100 | GO:0006857: oligopeptide transport | 2.83E-02 |
| 101 | GO:0051301: cell division | 4.08E-02 |
| 102 | GO:0009058: biosynthetic process | 4.22E-02 |
| 103 | GO:0042744: hydrogen peroxide catabolic process | 4.46E-02 |
| 104 | GO:0009790: embryo development | 4.54E-02 |
| 105 | GO:0006633: fatty acid biosynthetic process | 4.78E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0102193: protein-ribulosamine 3-kinase activity | 0.00E+00 |
| 2 | GO:0045436: lycopene beta cyclase activity | 0.00E+00 |
| 3 | GO:0046406: magnesium protoporphyrin IX methyltransferase activity | 0.00E+00 |
| 4 | GO:0010301: xanthoxin dehydrogenase activity | 0.00E+00 |
| 5 | GO:0047538: 2-carboxy-D-arabinitol-1-phosphatase activity | 0.00E+00 |
| 6 | GO:0009976: tocopherol cyclase activity | 0.00E+00 |
| 7 | GO:0030604: 1-deoxy-D-xylulose-5-phosphate reductoisomerase activity | 0.00E+00 |
| 8 | GO:0050139: nicotinate-N-glucosyltransferase activity | 9.88E-05 |
| 9 | GO:0030794: (S)-coclaurine-N-methyltransferase activity | 9.88E-05 |
| 10 | GO:0042586: peptide deformylase activity | 9.88E-05 |
| 11 | GO:0045485: omega-6 fatty acid desaturase activity | 9.88E-05 |
| 12 | GO:0004321: fatty-acyl-CoA synthase activity | 9.88E-05 |
| 13 | GO:0034256: chlorophyll(ide) b reductase activity | 9.88E-05 |
| 14 | GO:0047746: chlorophyllase activity | 2.32E-04 |
| 15 | GO:0009977: proton motive force dependent protein transmembrane transporter activity | 2.32E-04 |
| 16 | GO:0004617: phosphoglycerate dehydrogenase activity | 2.32E-04 |
| 17 | GO:0033201: alpha-1,4-glucan synthase activity | 2.32E-04 |
| 18 | GO:0003844: 1,4-alpha-glucan branching enzyme activity | 2.32E-04 |
| 19 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 2.73E-04 |
| 20 | GO:0005528: FK506 binding | 3.16E-04 |
| 21 | GO:0004176: ATP-dependent peptidase activity | 3.84E-04 |
| 22 | GO:0016742: hydroxymethyl-, formyl- and related transferase activity | 3.86E-04 |
| 23 | GO:0070402: NADPH binding | 3.86E-04 |
| 24 | GO:0008864: formyltetrahydrofolate deformylase activity | 3.86E-04 |
| 25 | GO:0043169: cation binding | 3.86E-04 |
| 26 | GO:0004373: glycogen (starch) synthase activity | 3.86E-04 |
| 27 | GO:0003825: alpha,alpha-trehalose-phosphate synthase (UDP-forming) activity | 5.54E-04 |
| 28 | GO:0016853: isomerase activity | 6.69E-04 |
| 29 | GO:0050662: coenzyme binding | 6.69E-04 |
| 30 | GO:0009011: starch synthase activity | 7.37E-04 |
| 31 | GO:0050378: UDP-glucuronate 4-epimerase activity | 7.37E-04 |
| 32 | GO:0016597: amino acid binding | 1.03E-03 |
| 33 | GO:0035673: oligopeptide transmembrane transporter activity | 1.14E-03 |
| 34 | GO:0003824: catalytic activity | 1.21E-03 |
| 35 | GO:0005242: inward rectifier potassium channel activity | 1.36E-03 |
| 36 | GO:0016491: oxidoreductase activity | 1.67E-03 |
| 37 | GO:0043022: ribosome binding | 1.84E-03 |
| 38 | GO:0016207: 4-coumarate-CoA ligase activity | 2.37E-03 |
| 39 | GO:0015198: oligopeptide transporter activity | 3.57E-03 |
| 40 | GO:0031072: heat shock protein binding | 3.89E-03 |
| 41 | GO:0004565: beta-galactosidase activity | 3.89E-03 |
| 42 | GO:0004022: alcohol dehydrogenase (NAD) activity | 3.89E-03 |
| 43 | GO:0016787: hydrolase activity | 3.92E-03 |
| 44 | GO:0008266: poly(U) RNA binding | 4.22E-03 |
| 45 | GO:0043424: protein histidine kinase binding | 5.65E-03 |
| 46 | GO:0005249: voltage-gated potassium channel activity | 8.07E-03 |
| 47 | GO:0030551: cyclic nucleotide binding | 8.07E-03 |
| 48 | GO:0046933: proton-transporting ATP synthase activity, rotational mechanism | 8.50E-03 |
| 49 | GO:0005355: glucose transmembrane transporter activity | 8.94E-03 |
| 50 | GO:0042802: identical protein binding | 9.44E-03 |
| 51 | GO:0048038: quinone binding | 9.85E-03 |
| 52 | GO:0008168: methyltransferase activity | 1.11E-02 |
| 53 | GO:0016791: phosphatase activity | 1.13E-02 |
| 54 | GO:0030246: carbohydrate binding | 1.15E-02 |
| 55 | GO:0008237: metallopeptidase activity | 1.18E-02 |
| 56 | GO:0005200: structural constituent of cytoskeleton | 1.18E-02 |
| 57 | GO:0051213: dioxygenase activity | 1.28E-02 |
| 58 | GO:0004222: metalloendopeptidase activity | 1.65E-02 |
| 59 | GO:0030145: manganese ion binding | 1.71E-02 |
| 60 | GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors | 1.82E-02 |
| 61 | GO:0003746: translation elongation factor activity | 1.82E-02 |
| 62 | GO:0051539: 4 iron, 4 sulfur cluster binding | 2.00E-02 |
| 63 | GO:0009055: electron carrier activity | 2.27E-02 |
| 64 | GO:0051287: NAD binding | 2.50E-02 |
| 65 | GO:0080043: quercetin 3-O-glucosyltransferase activity | 3.25E-02 |
| 66 | GO:0080044: quercetin 7-O-glucosyltransferase activity | 3.25E-02 |
| 67 | GO:0016874: ligase activity | 3.32E-02 |
| 68 | GO:0022857: transmembrane transporter activity | 3.32E-02 |
| 69 | GO:0051082: unfolded protein binding | 3.47E-02 |
| 70 | GO:0019843: rRNA binding | 4.07E-02 |
| 71 | GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen | 4.15E-02 |
| 72 | GO:0016829: lyase activity | 4.30E-02 |
| 73 | GO:0015144: carbohydrate transmembrane transporter activity | 4.62E-02 |
| 74 | GO:0005515: protein binding | 4.65E-02 |
| 75 | GO:0004675: transmembrane receptor protein serine/threonine kinase activity | 4.86E-02 |
| 76 | GO:0046872: metal ion binding | 4.96E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0043235: receptor complex | 0.00E+00 |
| 2 | GO:0009507: chloroplast | 8.40E-27 |
| 3 | GO:0009534: chloroplast thylakoid | 1.53E-19 |
| 4 | GO:0009535: chloroplast thylakoid membrane | 8.06E-19 |
| 5 | GO:0009570: chloroplast stroma | 3.21E-11 |
| 6 | GO:0009579: thylakoid | 1.60E-09 |
| 7 | GO:0009543: chloroplast thylakoid lumen | 3.78E-09 |
| 8 | GO:0009941: chloroplast envelope | 4.09E-09 |
| 9 | GO:0031977: thylakoid lumen | 6.04E-09 |
| 10 | GO:0009501: amyloplast | 5.57E-05 |
| 11 | GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone) | 8.74E-05 |
| 12 | GO:0031361: integral component of thylakoid membrane | 9.88E-05 |
| 13 | GO:0009515: granal stacked thylakoid | 9.88E-05 |
| 14 | GO:0009654: photosystem II oxygen evolving complex | 3.49E-04 |
| 15 | GO:0033281: TAT protein transport complex | 3.86E-04 |
| 16 | GO:0009706: chloroplast inner membrane | 5.21E-04 |
| 17 | GO:0015630: microtubule cytoskeleton | 5.54E-04 |
| 18 | GO:0010287: plastoglobule | 6.45E-04 |
| 19 | GO:0019898: extrinsic component of membrane | 7.16E-04 |
| 20 | GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1) | 1.14E-03 |
| 21 | GO:0009533: chloroplast stromal thylakoid | 1.59E-03 |
| 22 | GO:0031969: chloroplast membrane | 2.32E-03 |
| 23 | GO:0008180: COP9 signalosome | 2.37E-03 |
| 24 | GO:0009508: plastid chromosome | 3.89E-03 |
| 25 | GO:0030095: chloroplast photosystem II | 4.22E-03 |
| 26 | GO:0032580: Golgi cisterna membrane | 1.13E-02 |
| 27 | GO:0010319: stromule | 1.18E-02 |
| 28 | GO:0009295: nucleoid | 1.18E-02 |
| 29 | GO:0030529: intracellular ribonucleoprotein complex | 1.28E-02 |
| 30 | GO:0019005: SCF ubiquitin ligase complex | 1.54E-02 |
| 31 | GO:0009707: chloroplast outer membrane | 1.54E-02 |
| 32 | GO:0000502: proteasome complex | 2.70E-02 |
| 33 | GO:0005887: integral component of plasma membrane | 2.87E-02 |