GO Enrichment Analysis of Co-expressed Genes with
AT2G21170
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0016553: base conversion or substitution editing | 0.00E+00 |
| 2 | GO:0006399: tRNA metabolic process | 0.00E+00 |
| 3 | GO:0015882: L-ascorbic acid transport | 0.00E+00 |
| 4 | GO:0071482: cellular response to light stimulus | 2.97E-05 |
| 5 | GO:0043489: RNA stabilization | 5.64E-05 |
| 6 | GO:0010028: xanthophyll cycle | 5.64E-05 |
| 7 | GO:0006427: histidyl-tRNA aminoacylation | 5.64E-05 |
| 8 | GO:0009073: aromatic amino acid family biosynthetic process | 6.52E-05 |
| 9 | GO:0006352: DNA-templated transcription, initiation | 6.52E-05 |
| 10 | GO:0018022: peptidyl-lysine methylation | 1.37E-04 |
| 11 | GO:0006568: tryptophan metabolic process | 1.37E-04 |
| 12 | GO:0010270: photosystem II oxygen evolving complex assembly | 1.37E-04 |
| 13 | GO:0006695: cholesterol biosynthetic process | 1.37E-04 |
| 14 | GO:0030865: cortical cytoskeleton organization | 2.34E-04 |
| 15 | GO:0000913: preprophase band assembly | 2.34E-04 |
| 16 | GO:0010581: regulation of starch biosynthetic process | 2.34E-04 |
| 17 | GO:0009052: pentose-phosphate shunt, non-oxidative branch | 3.41E-04 |
| 18 | GO:2001141: regulation of RNA biosynthetic process | 3.41E-04 |
| 19 | GO:0016556: mRNA modification | 3.41E-04 |
| 20 | GO:0071483: cellular response to blue light | 4.56E-04 |
| 21 | GO:0051567: histone H3-K9 methylation | 4.56E-04 |
| 22 | GO:0000304: response to singlet oxygen | 5.78E-04 |
| 23 | GO:0009658: chloroplast organization | 7.02E-04 |
| 24 | GO:0010190: cytochrome b6f complex assembly | 7.07E-04 |
| 25 | GO:0000470: maturation of LSU-rRNA | 7.07E-04 |
| 26 | GO:0006828: manganese ion transport | 7.07E-04 |
| 27 | GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 8.44E-04 |
| 28 | GO:0009854: oxidative photosynthetic carbon pathway | 8.44E-04 |
| 29 | GO:0006400: tRNA modification | 9.85E-04 |
| 30 | GO:0042255: ribosome assembly | 1.13E-03 |
| 31 | GO:0006353: DNA-templated transcription, termination | 1.13E-03 |
| 32 | GO:0019430: removal of superoxide radicals | 1.29E-03 |
| 33 | GO:0033384: geranyl diphosphate biosynthetic process | 1.45E-03 |
| 34 | GO:0098656: anion transmembrane transport | 1.45E-03 |
| 35 | GO:0045337: farnesyl diphosphate biosynthetic process | 1.45E-03 |
| 36 | GO:0051603: proteolysis involved in cellular protein catabolic process | 1.52E-03 |
| 37 | GO:0016571: histone methylation | 1.62E-03 |
| 38 | GO:0010380: regulation of chlorophyll biosynthetic process | 1.62E-03 |
| 39 | GO:0048829: root cap development | 1.79E-03 |
| 40 | GO:0043085: positive regulation of catalytic activity | 1.97E-03 |
| 41 | GO:0010216: maintenance of DNA methylation | 1.97E-03 |
| 42 | GO:0006816: calcium ion transport | 1.97E-03 |
| 43 | GO:0010020: chloroplast fission | 2.56E-03 |
| 44 | GO:0090351: seedling development | 2.76E-03 |
| 45 | GO:0008299: isoprenoid biosynthetic process | 3.40E-03 |
| 46 | GO:0031408: oxylipin biosynthetic process | 3.63E-03 |
| 47 | GO:0003333: amino acid transmembrane transport | 3.63E-03 |
| 48 | GO:0008033: tRNA processing | 4.83E-03 |
| 49 | GO:0000226: microtubule cytoskeleton organization | 4.83E-03 |
| 50 | GO:0006412: translation | 4.94E-03 |
| 51 | GO:0007018: microtubule-based movement | 5.35E-03 |
| 52 | GO:0032502: developmental process | 6.15E-03 |
| 53 | GO:0010027: thylakoid membrane organization | 7.59E-03 |
| 54 | GO:0015979: photosynthesis | 7.73E-03 |
| 55 | GO:0045454: cell redox homeostasis | 8.11E-03 |
| 56 | GO:0015995: chlorophyll biosynthetic process | 8.50E-03 |
| 57 | GO:0016311: dephosphorylation | 8.81E-03 |
| 58 | GO:0009631: cold acclimation | 1.01E-02 |
| 59 | GO:0006865: amino acid transport | 1.04E-02 |
| 60 | GO:0045087: innate immune response | 1.08E-02 |
| 61 | GO:0009637: response to blue light | 1.08E-02 |
| 62 | GO:0009853: photorespiration | 1.08E-02 |
| 63 | GO:0030001: metal ion transport | 1.18E-02 |
| 64 | GO:0006631: fatty acid metabolic process | 1.22E-02 |
| 65 | GO:0010114: response to red light | 1.29E-02 |
| 66 | GO:0006396: RNA processing | 2.09E-02 |
| 67 | GO:0006457: protein folding | 2.31E-02 |
| 68 | GO:0042744: hydrogen peroxide catabolic process | 2.63E-02 |
| 69 | GO:0006633: fatty acid biosynthetic process | 2.82E-02 |
| 70 | GO:0009451: RNA modification | 3.07E-02 |
| 71 | GO:0006508: proteolysis | 3.07E-02 |
| 72 | GO:0008380: RNA splicing | 3.42E-02 |
| 73 | GO:0045944: positive regulation of transcription from RNA polymerase II promoter | 3.90E-02 |
| 74 | GO:0042254: ribosome biogenesis | 4.17E-02 |
| 75 | GO:0009409: response to cold | 4.86E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0008887: glycerate kinase activity | 0.00E+00 |
| 2 | GO:0015229: L-ascorbic acid transporter activity | 0.00E+00 |
| 3 | GO:0046974: histone methyltransferase activity (H3-K9 specific) | 0.00E+00 |
| 4 | GO:0019843: rRNA binding | 1.22E-08 |
| 5 | GO:0001053: plastid sigma factor activity | 3.37E-06 |
| 6 | GO:0016987: sigma factor activity | 3.37E-06 |
| 7 | GO:0004821: histidine-tRNA ligase activity | 5.64E-05 |
| 8 | GO:0047381: dodecanoyl-[acyl-carrier-protein] hydrolase activity | 5.64E-05 |
| 9 | GO:0004425: indole-3-glycerol-phosphate synthase activity | 5.64E-05 |
| 10 | GO:0008266: poly(U) RNA binding | 1.02E-04 |
| 11 | GO:0019171: 3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity | 1.37E-04 |
| 12 | GO:0004751: ribose-5-phosphate isomerase activity | 2.34E-04 |
| 13 | GO:0010429: methyl-CpNpN binding | 2.34E-04 |
| 14 | GO:0016296: palmitoyl-[acyl-carrier-protein] hydrolase activity | 2.34E-04 |
| 15 | GO:0016295: myristoyl-[acyl-carrier-protein] hydrolase activity | 2.34E-04 |
| 16 | GO:0070330: aromatase activity | 2.34E-04 |
| 17 | GO:0010428: methyl-CpNpG binding | 2.34E-04 |
| 18 | GO:0004148: dihydrolipoyl dehydrogenase activity | 2.34E-04 |
| 19 | GO:0016836: hydro-lyase activity | 4.56E-04 |
| 20 | GO:0008574: ATP-dependent microtubule motor activity, plus-end-directed | 4.56E-04 |
| 21 | GO:0010328: auxin influx transmembrane transporter activity | 4.56E-04 |
| 22 | GO:0010385: double-stranded methylated DNA binding | 4.56E-04 |
| 23 | GO:0018685: alkane 1-monooxygenase activity | 5.78E-04 |
| 24 | GO:0051920: peroxiredoxin activity | 8.44E-04 |
| 25 | GO:0003735: structural constituent of ribosome | 9.19E-04 |
| 26 | GO:0004185: serine-type carboxypeptidase activity | 1.10E-03 |
| 27 | GO:0016209: antioxidant activity | 1.13E-03 |
| 28 | GO:0004033: aldo-keto reductase (NADP) activity | 1.13E-03 |
| 29 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 1.28E-03 |
| 30 | GO:0004337: geranyltranstransferase activity | 1.45E-03 |
| 31 | GO:0003899: DNA-directed 5'-3' RNA polymerase activity | 1.47E-03 |
| 32 | GO:0047617: acyl-CoA hydrolase activity | 1.62E-03 |
| 33 | GO:0005384: manganese ion transmembrane transporter activity | 1.62E-03 |
| 34 | GO:0008047: enzyme activator activity | 1.79E-03 |
| 35 | GO:0008327: methyl-CpG binding | 1.97E-03 |
| 36 | GO:0004161: dimethylallyltranstransferase activity | 1.97E-03 |
| 37 | GO:0005315: inorganic phosphate transmembrane transporter activity | 2.36E-03 |
| 38 | GO:0015095: magnesium ion transmembrane transporter activity | 2.36E-03 |
| 39 | GO:0031072: heat shock protein binding | 2.36E-03 |
| 40 | GO:0003723: RNA binding | 2.93E-03 |
| 41 | GO:0005528: FK506 binding | 3.18E-03 |
| 42 | GO:0003727: single-stranded RNA binding | 4.34E-03 |
| 43 | GO:0008514: organic anion transmembrane transporter activity | 4.34E-03 |
| 44 | GO:0050662: coenzyme binding | 5.35E-03 |
| 45 | GO:0004791: thioredoxin-disulfide reductase activity | 5.35E-03 |
| 46 | GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor | 6.43E-03 |
| 47 | GO:0008236: serine-type peptidase activity | 8.81E-03 |
| 48 | GO:0000982: transcription factor activity, RNA polymerase II core promoter proximal region sequence-specific binding | 8.81E-03 |
| 49 | GO:0003993: acid phosphatase activity | 1.11E-02 |
| 50 | GO:0000987: core promoter proximal region sequence-specific DNA binding | 1.11E-02 |
| 51 | GO:0042393: histone binding | 1.18E-02 |
| 52 | GO:0051539: 4 iron, 4 sulfur cluster binding | 1.18E-02 |
| 53 | GO:0015293: symporter activity | 1.40E-02 |
| 54 | GO:0003690: double-stranded DNA binding | 1.63E-02 |
| 55 | GO:0003777: microtubule motor activity | 1.71E-02 |
| 56 | GO:0015171: amino acid transmembrane transporter activity | 1.71E-02 |
| 57 | GO:0051082: unfolded protein binding | 2.04E-02 |
| 58 | GO:0008017: microtubule binding | 3.12E-02 |
| 59 | GO:0005509: calcium ion binding | 3.33E-02 |
| 60 | GO:0000287: magnesium ion binding | 4.06E-02 |
| 61 | GO:0004601: peroxidase activity | 4.12E-02 |
| 62 | GO:0016788: hydrolase activity, acting on ester bonds | 4.17E-02 |
| 63 | GO:0016491: oxidoreductase activity | 4.73E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0009507: chloroplast | 4.20E-24 |
| 2 | GO:0009570: chloroplast stroma | 9.28E-13 |
| 3 | GO:0009941: chloroplast envelope | 2.40E-11 |
| 4 | GO:0009535: chloroplast thylakoid membrane | 1.42E-09 |
| 5 | GO:0009543: chloroplast thylakoid lumen | 5.18E-07 |
| 6 | GO:0031977: thylakoid lumen | 2.05E-06 |
| 7 | GO:0009579: thylakoid | 8.13E-06 |
| 8 | GO:0009547: plastid ribosome | 5.64E-05 |
| 9 | GO:0009534: chloroplast thylakoid | 9.47E-05 |
| 10 | GO:0000312: plastid small ribosomal subunit | 1.02E-04 |
| 11 | GO:0030981: cortical microtubule cytoskeleton | 1.37E-04 |
| 12 | GO:0009654: photosystem II oxygen evolving complex | 1.63E-04 |
| 13 | GO:0019898: extrinsic component of membrane | 3.49E-04 |
| 14 | GO:0009536: plastid | 1.98E-03 |
| 15 | GO:0009706: chloroplast inner membrane | 2.07E-03 |
| 16 | GO:0000311: plastid large ribosomal subunit | 2.16E-03 |
| 17 | GO:0043234: protein complex | 2.97E-03 |
| 18 | GO:0042651: thylakoid membrane | 3.40E-03 |
| 19 | GO:0015935: small ribosomal subunit | 3.63E-03 |
| 20 | GO:0000775: chromosome, centromeric region | 3.86E-03 |
| 21 | GO:0005871: kinesin complex | 4.58E-03 |
| 22 | GO:0022627: cytosolic small ribosomal subunit | 4.68E-03 |
| 23 | GO:0031969: chloroplast membrane | 6.77E-03 |
| 24 | GO:0010319: stromule | 7.00E-03 |
| 25 | GO:0009295: nucleoid | 7.00E-03 |
| 26 | GO:0030529: intracellular ribonucleoprotein complex | 7.59E-03 |
| 27 | GO:0005840: ribosome | 7.91E-03 |
| 28 | GO:0005874: microtubule | 4.68E-02 |
| 29 | GO:0016020: membrane | 4.88E-02 |
| 30 | GO:0022625: cytosolic large ribosomal subunit | 4.97E-02 |