co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT2G20570

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:1905255: regulation of RNA binding transcription factor activity	0.00E+00
2	GO:0090279: regulation of calcium ion import	0.00E+00
3	GO:1903508: positive regulation of nucleic acid-templated transcription	0.00E+00
4	GO:0071474: cellular hyperosmotic response	0.00E+00
5	GO:1903428: positive regulation of reactive oxygen species biosynthetic process	0.00E+00
6	GO:0070584: mitochondrion morphogenesis	0.00E+00
7	GO:1901401: regulation of tetrapyrrole metabolic process	0.00E+00
8	GO:0009768: photosynthesis, light harvesting in photosystem I	7.72E-23
9	GO:0015979: photosynthesis	7.52E-17
10	GO:0018298: protein-chromophore linkage	1.04E-14
11	GO:0009645: response to low light intensity stimulus	2.29E-10
12	GO:0009644: response to high light intensity	9.15E-10
13	GO:0010114: response to red light	4.73E-08
14	GO:0010218: response to far red light	1.02E-06
15	GO:0009637: response to blue light	1.40E-06
16	GO:0010196: nonphotochemical quenching	1.74E-05
17	GO:0009769: photosynthesis, light harvesting in photosystem II	1.74E-05
18	GO:0015995: chlorophyll biosynthetic process	3.05E-05
19	GO:0015812: gamma-aminobutyric acid transport	5.64E-05
20	GO:0009416: response to light stimulus	6.31E-05
21	GO:0051262: protein tetramerization	1.37E-04
22	GO:1902448: positive regulation of shade avoidance	2.34E-04
23	GO:0006598: polyamine catabolic process	2.34E-04
24	GO:0007276: gamete generation	3.41E-04
25	GO:0031936: negative regulation of chromatin silencing	3.41E-04
26	GO:0010071: root meristem specification	3.41E-04
27	GO:1903830: magnesium ion transmembrane transport	4.56E-04
28	GO:0009765: photosynthesis, light harvesting	4.56E-04
29	GO:2000306: positive regulation of photomorphogenesis	4.56E-04
30	GO:0010600: regulation of auxin biosynthetic process	4.56E-04
31	GO:0030104: water homeostasis	4.56E-04
32	GO:0000003: reproduction	4.56E-04
33	GO:0009755: hormone-mediated signaling pathway	4.56E-04
34	GO:0009739: response to gibberellin	4.68E-04
35	GO:0009788: negative regulation of abscisic acid-activated signaling pathway	5.66E-04
36	GO:0010438: cellular response to sulfur starvation	5.78E-04
37	GO:0000290: deadenylation-dependent decapping of nuclear-transcribed mRNA	5.78E-04
38	GO:0045962: positive regulation of development, heterochronic	7.07E-04
39	GO:0009635: response to herbicide	7.07E-04
40	GO:0010119: regulation of stomatal movement	7.96E-04
41	GO:0000079: regulation of cyclin-dependent protein serine/threonine kinase activity	8.44E-04
42	GO:0010244: response to low fluence blue light stimulus by blue low-fluence system	8.44E-04
43	GO:0031930: mitochondria-nucleus signaling pathway	8.44E-04
44	GO:0033962: cytoplasmic mRNA processing body assembly	8.44E-04
45	GO:0080111: DNA demethylation	9.85E-04
46	GO:0051510: regulation of unidimensional cell growth	9.85E-04
47	GO:0015693: magnesium ion transport	9.85E-04
48	GO:0010161: red light signaling pathway	9.85E-04
49	GO:0010928: regulation of auxin mediated signaling pathway	1.13E-03
50	GO:0009819: drought recovery	1.13E-03
51	GO:0042255: ribosome assembly	1.13E-03
52	GO:0010439: regulation of glucosinolate biosynthetic process	1.13E-03
53	GO:0010078: maintenance of root meristem identity	1.13E-03
54	GO:0009704: de-etiolation	1.13E-03
55	GO:2000070: regulation of response to water deprivation	1.13E-03
56	GO:0006075: (1->3)-beta-D-glucan biosynthetic process	1.29E-03
57	GO:0007186: G-protein coupled receptor signaling pathway	1.29E-03
58	GO:0090333: regulation of stomatal closure	1.45E-03
59	GO:0006351: transcription, DNA-templated	1.49E-03
60	GO:0007346: regulation of mitotic cell cycle	1.62E-03
61	GO:0006949: syncytium formation	1.79E-03
62	GO:0010162: seed dormancy process	1.79E-03
63	GO:0048829: root cap development	1.79E-03
64	GO:0009740: gibberellic acid mediated signaling pathway	1.95E-03
65	GO:0046856: phosphatidylinositol dephosphorylation	1.97E-03
66	GO:0009682: induced systemic resistance	1.97E-03
67	GO:0018119: peptidyl-cysteine S-nitrosylation	1.97E-03
68	GO:0055114: oxidation-reduction process	2.12E-03
69	GO:0010105: negative regulation of ethylene-activated signaling pathway	2.16E-03
70	GO:0009409: response to cold	2.30E-03
71	GO:0009767: photosynthetic electron transport chain	2.36E-03
72	GO:0010207: photosystem II assembly	2.56E-03
73	GO:0009887: animal organ morphogenesis	2.56E-03
74	GO:0090351: seedling development	2.76E-03
75	GO:0051302: regulation of cell division	3.40E-03
76	GO:0006874: cellular calcium ion homeostasis	3.40E-03
77	GO:0009269: response to desiccation	3.63E-03
78	GO:0003333: amino acid transmembrane transport	3.63E-03
79	GO:0048511: rhythmic process	3.63E-03
80	GO:0010228: vegetative to reproductive phase transition of meristem	3.71E-03
81	GO:0010017: red or far-red light signaling pathway	3.86E-03
82	GO:0071215: cellular response to abscisic acid stimulus	4.10E-03
83	GO:0009686: gibberellin biosynthetic process	4.10E-03
84	GO:0009625: response to insect	4.10E-03
85	GO:0010468: regulation of gene expression	4.23E-03
86	GO:0009737: response to abscisic acid	4.58E-03
87	GO:0006355: regulation of transcription, DNA-templated	4.95E-03
88	GO:0008360: regulation of cell shape	5.09E-03
89	GO:0006814: sodium ion transport	5.35E-03
90	GO:0009658: chloroplast organization	5.47E-03
91	GO:0000302: response to reactive oxygen species	5.88E-03
92	GO:0006970: response to osmotic stress	5.89E-03
93	GO:0032502: developmental process	6.15E-03
94	GO:0009828: plant-type cell wall loosening	6.71E-03
95	GO:0080167: response to karrikin	6.77E-03
96	GO:0016126: sterol biosynthetic process	7.59E-03
97	GO:0030154: cell differentiation	8.31E-03
98	GO:0048573: photoperiodism, flowering	8.50E-03
99	GO:0006811: ion transport	9.78E-03
100	GO:0009753: response to jasmonic acid	1.07E-02
101	GO:0009867: jasmonic acid mediated signaling pathway	1.08E-02
102	GO:0030001: metal ion transport	1.18E-02
103	GO:0042542: response to hydrogen peroxide	1.25E-02
104	GO:0009640: photomorphogenesis	1.29E-02
105	GO:0009965: leaf morphogenesis	1.40E-02
106	GO:0009664: plant-type cell wall organization	1.51E-02
107	GO:0009585: red, far-red light phototransduction	1.59E-02
108	GO:0009908: flower development	1.61E-02
109	GO:0009735: response to cytokinin	1.63E-02
110	GO:0009611: response to wounding	1.82E-02
111	GO:0035556: intracellular signal transduction	1.88E-02
112	GO:0051301: cell division	1.94E-02
113	GO:0009624: response to nematode	2.04E-02
114	GO:0009845: seed germination	2.54E-02
115	GO:0007623: circadian rhythm	3.02E-02
116	GO:0016567: protein ubiquitination	3.04E-02
117	GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process	3.27E-02
118	GO:0008380: RNA splicing	3.42E-02
119	GO:0009617: response to bacterium	3.42E-02
120	GO:0009651: response to salt stress	3.43E-02
121	GO:0009414: response to water deprivation	3.52E-02
122	GO:0045944: positive regulation of transcription from RNA polymerase II promoter	3.90E-02
123	GO:0009826: unidimensional cell growth	4.01E-02
124	GO:0009733: response to auxin	4.04E-02
125	GO:0007049: cell cycle	4.45E-02
126	GO:0009723: response to ethylene	4.57E-02
127	GO:0048366: leaf development	4.62E-02
128	GO:0010200: response to chitin	4.91E-02

Rank	GO Term	Adjusted P value
1	GO:0030504: inorganic diphosphate transmembrane transporter activity	0.00E+00
2	GO:0009899: ent-kaurene synthase activity	0.00E+00
3	GO:0048529: magnesium-protoporphyrin IX monomethyl ester (oxidative) cyclase activity	0.00E+00
4	GO:0019912: cyclin-dependent protein kinase activating kinase activity	0.00E+00
5	GO:0031409: pigment binding	1.07E-20
6	GO:0016168: chlorophyll binding	2.45E-17
7	GO:0005515: protein binding	7.82E-06
8	GO:0005227: calcium activated cation channel activity	5.64E-05
9	GO:0015185: gamma-aminobutyric acid transmembrane transporter activity	5.64E-05
10	GO:0016901: oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor	5.64E-05
11	GO:0046872: metal ion binding	1.26E-04
12	GO:0016630: protochlorophyllide reductase activity	1.37E-04
13	GO:0015180: L-alanine transmembrane transporter activity	1.37E-04
14	GO:0010277: chlorophyllide a oxygenase [overall] activity	2.34E-04
15	GO:0046592: polyamine oxidase activity	2.34E-04
16	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	2.76E-04
17	GO:0015189: L-lysine transmembrane transporter activity	3.41E-04
18	GO:0015181: arginine transmembrane transporter activity	3.41E-04
19	GO:0005313: L-glutamate transmembrane transporter activity	4.56E-04
20	GO:0004506: squalene monooxygenase activity	4.56E-04
21	GO:0004930: G-protein coupled receptor activity	4.56E-04
22	GO:0004693: cyclin-dependent protein serine/threonine kinase activity	7.61E-04
23	GO:0005261: cation channel activity	8.44E-04
24	GO:0003843: 1,3-beta-D-glucan synthase activity	1.29E-03
25	GO:0008353: RNA polymerase II carboxy-terminal domain kinase activity	1.29E-03
26	GO:0005506: iron ion binding	1.42E-03
27	GO:0047372: acylglycerol lipase activity	1.97E-03
28	GO:0004439: phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity	2.16E-03
29	GO:0003677: DNA binding	2.19E-03
30	GO:0005315: inorganic phosphate transmembrane transporter activity	2.36E-03
31	GO:0015095: magnesium ion transmembrane transporter activity	2.36E-03
32	GO:0008131: primary amine oxidase activity	2.56E-03
33	GO:0005217: intracellular ligand-gated ion channel activity	2.76E-03
34	GO:0003712: transcription cofactor activity	2.76E-03
35	GO:0004970: ionotropic glutamate receptor activity	2.76E-03
36	GO:0005216: ion channel activity	3.40E-03
37	GO:0004707: MAP kinase activity	3.63E-03
38	GO:0003700: transcription factor activity, sequence-specific DNA binding	3.63E-03
39	GO:0008514: organic anion transmembrane transporter activity	4.34E-03
40	GO:0003727: single-stranded RNA binding	4.34E-03
41	GO:0046873: metal ion transmembrane transporter activity	5.09E-03
42	GO:0016853: isomerase activity	5.35E-03
43	GO:0048038: quinone binding	5.88E-03
44	GO:0004497: monooxygenase activity	6.77E-03
45	GO:0042393: histone binding	1.18E-02
46	GO:0020037: heme binding	1.33E-02
47	GO:0051537: 2 iron, 2 sulfur cluster binding	1.36E-02
48	GO:0005198: structural molecule activity	1.40E-02
49	GO:0015293: symporter activity	1.40E-02
50	GO:0015171: amino acid transmembrane transporter activity	1.71E-02
51	GO:0019843: rRNA binding	2.40E-02
52	GO:0019825: oxygen binding	2.54E-02
53	GO:0015144: carbohydrate transmembrane transporter activity	2.73E-02
54	GO:0015297: antiporter activity	2.92E-02
55	GO:0005351: sugar:proton symporter activity	2.97E-02
56	GO:0000287: magnesium ion binding	4.06E-02
57	GO:0003682: chromatin binding	4.29E-02
58	GO:0050660: flavin adenine dinucleotide binding	4.57E-02
59	GO:0061630: ubiquitin protein ligase activity	4.97E-02

Rank	GO Term	Adjusted P value
1	GO:0009783: photosystem II antenna complex	0.00E+00
2	GO:0009522: photosystem I	1.31E-18
3	GO:0009534: chloroplast thylakoid	2.21E-17
4	GO:0009535: chloroplast thylakoid membrane	2.88E-16
5	GO:0009579: thylakoid	8.68E-16
6	GO:0030076: light-harvesting complex	9.94E-16
7	GO:0010287: plastoglobule	4.35E-14
8	GO:0009941: chloroplast envelope	3.67E-10
9	GO:0009523: photosystem II	1.62E-07
10	GO:0042651: thylakoid membrane	3.11E-06
11	GO:0009517: PSII associated light-harvesting complex II	3.37E-06
12	GO:0009507: chloroplast	1.81E-05
13	GO:0016020: membrane	1.55E-04
14	GO:0000932: P-body	5.36E-04
15	GO:0009533: chloroplast stromal thylakoid	9.85E-04
16	GO:0009538: photosystem I reaction center	1.13E-03
17	GO:0000148: 1,3-beta-D-glucan synthase complex	1.29E-03
18	GO:0031966: mitochondrial membrane	1.37E-03
19	GO:0005680: anaphase-promoting complex	1.45E-03
20	GO:0010494: cytoplasmic stress granule	1.45E-03
21	GO:0016021: integral component of membrane	1.97E-03
22	GO:0009706: chloroplast inner membrane	2.07E-03
23	GO:0030095: chloroplast photosystem II	2.56E-03
24	GO:0009654: photosystem II oxygen evolving complex	3.40E-03
25	GO:0009504: cell plate	5.61E-03
26	GO:0019898: extrinsic component of membrane	5.61E-03
27	GO:0009707: chloroplast outer membrane	9.13E-03
28	GO:0005819: spindle	1.15E-02
29	GO:0031977: thylakoid lumen	1.22E-02
30	GO:0009543: chloroplast thylakoid lumen	2.40E-02
31	GO:0046658: anchored component of plasma membrane	3.69E-02
32	GO:0080008: Cul4-RING E3 ubiquitin ligase complex	4.40E-02