co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT2G19170

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0000373: Group II intron splicing	7.82E-06
2	GO:0030422: production of siRNA involved in RNA interference	1.19E-05
3	GO:0001736: establishment of planar polarity	5.37E-05
4	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	5.43E-05
5	GO:0046168: glycerol-3-phosphate catabolic process	9.50E-05
6	GO:0006617: SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition	9.50E-05
7	GO:0009828: plant-type cell wall loosening	1.23E-04
8	GO:0051607: defense response to virus	1.40E-04
9	GO:0009413: response to flooding	1.42E-04
10	GO:0010239: chloroplast mRNA processing	1.42E-04
11	GO:0019048: modulation by virus of host morphology or physiology	1.42E-04
12	GO:0006072: glycerol-3-phosphate metabolic process	1.42E-04
13	GO:0031048: chromatin silencing by small RNA	1.42E-04
14	GO:0015995: chlorophyll biosynthetic process	1.78E-04
15	GO:0051567: histone H3-K9 methylation	1.95E-04
16	GO:0045038: protein import into chloroplast thylakoid membrane	2.51E-04
17	GO:0048497: maintenance of floral organ identity	2.51E-04
18	GO:0010438: cellular response to sulfur starvation	2.51E-04
19	GO:0009616: virus induced gene silencing	2.51E-04
20	GO:0009913: epidermal cell differentiation	3.11E-04
21	GO:0016458: gene silencing	3.11E-04
22	GO:0009759: indole glucosinolate biosynthetic process	3.11E-04
23	GO:0016246: RNA interference	3.73E-04
24	GO:1901259: chloroplast rRNA processing	3.73E-04
25	GO:0009664: plant-type cell wall organization	4.10E-04
26	GO:0006614: SRP-dependent cotranslational protein targeting to membrane	4.37E-04
27	GO:0048564: photosystem I assembly	5.05E-04
28	GO:0045292: mRNA cis splicing, via spliceosome	5.05E-04
29	GO:0006353: DNA-templated transcription, termination	5.05E-04
30	GO:0010267: production of ta-siRNAs involved in RNA interference	7.18E-04
31	GO:0048829: root cap development	7.94E-04
32	GO:0016441: posttranscriptional gene silencing	7.94E-04
33	GO:0006949: syncytium formation	7.94E-04
34	GO:0048765: root hair cell differentiation	8.71E-04
35	GO:0002213: defense response to insect	9.50E-04
36	GO:2000012: regulation of auxin polar transport	1.03E-03
37	GO:0048467: gynoecium development	1.11E-03
38	GO:0048440: carpel development	1.11E-03
39	GO:0009739: response to gibberellin	1.15E-03
40	GO:0000162: tryptophan biosynthetic process	1.29E-03
41	GO:0009826: unidimensional cell growth	1.52E-03
42	GO:0003333: amino acid transmembrane transport	1.56E-03
43	GO:0006306: DNA methylation	1.56E-03
44	GO:0030245: cellulose catabolic process	1.66E-03
45	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	2.01E-03
46	GO:0080022: primary root development	2.07E-03
47	GO:0009958: positive gravitropism	2.17E-03
48	GO:0006342: chromatin silencing	2.17E-03
49	GO:0015979: photosynthesis	2.21E-03
50	GO:0048544: recognition of pollen	2.28E-03
51	GO:0048825: cotyledon development	2.39E-03
52	GO:0031047: gene silencing by RNA	2.61E-03
53	GO:0009816: defense response to bacterium, incompatible interaction	3.33E-03
54	GO:0010311: lateral root formation	3.97E-03
55	GO:0006865: amino acid transport	4.37E-03
56	GO:0010114: response to red light	5.37E-03
57	GO:0009926: auxin polar transport	5.37E-03
58	GO:0006417: regulation of translation	7.07E-03
59	GO:0048316: seed development	7.57E-03
60	GO:0009740: gibberellic acid mediated signaling pathway	8.07E-03
61	GO:0042545: cell wall modification	8.25E-03
62	GO:0009624: response to nematode	8.42E-03
63	GO:0009058: biosynthetic process	1.02E-02
64	GO:0009845: seed germination	1.04E-02
65	GO:0007623: circadian rhythm	1.24E-02
66	GO:0045490: pectin catabolic process	1.24E-02
67	GO:0009451: RNA modification	1.26E-02
68	GO:0005975: carbohydrate metabolic process	1.54E-02
69	GO:0009723: response to ethylene	1.87E-02
70	GO:0048366: leaf development	1.89E-02
71	GO:0009737: response to abscisic acid	2.17E-02
72	GO:0045454: cell redox homeostasis	2.23E-02
73	GO:0032259: methylation	2.51E-02
74	GO:0006629: lipid metabolic process	2.59E-02
75	GO:0009753: response to jasmonic acid	2.72E-02
76	GO:0006357: regulation of transcription from RNA polymerase II promoter	3.16E-02
77	GO:0009734: auxin-activated signaling pathway	3.31E-02
78	GO:0009735: response to cytokinin	3.66E-02
79	GO:0045893: positive regulation of transcription, DNA-templated	4.30E-02

Rank	GO Term	Adjusted P value
1	GO:0047661: amino-acid racemase activity	0.00E+00
2	GO:0005048: signal sequence binding	0.00E+00
3	GO:0016851: magnesium chelatase activity	3.21E-07
4	GO:0004367: glycerol-3-phosphate dehydrogenase [NAD+] activity	9.50E-05
5	GO:0035197: siRNA binding	1.42E-04
6	GO:0010011: auxin binding	1.95E-04
7	GO:0010328: auxin influx transmembrane transporter activity	1.95E-04
8	GO:0003968: RNA-directed 5'-3' RNA polymerase activity	3.11E-04
9	GO:0004723: calcium-dependent protein serine/threonine phosphatase activity	3.73E-04
10	GO:0004714: transmembrane receptor protein tyrosine kinase activity	5.05E-04
11	GO:0008312: 7S RNA binding	5.05E-04
12	GO:0004521: endoribonuclease activity	9.50E-04
13	GO:0008081: phosphoric diester hydrolase activity	1.03E-03
14	GO:0003887: DNA-directed DNA polymerase activity	1.29E-03
15	GO:0005528: FK506 binding	1.38E-03
16	GO:0008810: cellulase activity	1.76E-03
17	GO:0004518: nuclease activity	2.61E-03
18	GO:0003723: RNA binding	4.64E-03
19	GO:0043621: protein self-association	5.66E-03
20	GO:0015293: symporter activity	5.81E-03
21	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	5.97E-03
22	GO:0051287: NAD binding	6.12E-03
23	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	6.61E-03
24	GO:0015171: amino acid transmembrane transporter activity	7.07E-03
25	GO:0045330: aspartyl esterase activity	7.07E-03
26	GO:0030599: pectinesterase activity	8.07E-03
27	GO:0019843: rRNA binding	9.85E-03
28	GO:0004252: serine-type endopeptidase activity	1.06E-02
29	GO:0046910: pectinesterase inhibitor activity	1.18E-02
30	GO:0003729: mRNA binding	1.51E-02
31	GO:0008168: methyltransferase activity	1.64E-02
32	GO:0003682: chromatin binding	1.75E-02
33	GO:0001135: transcription factor activity, RNA polymerase II transcription factor recruiting	2.23E-02
34	GO:0000981: RNA polymerase II transcription factor activity, sequence-specific DNA binding	2.41E-02
35	GO:0003924: GTPase activity	2.59E-02
36	GO:0004519: endonuclease activity	2.75E-02
37	GO:0008289: lipid binding	3.28E-02
38	GO:0016887: ATPase activity	3.54E-02
39	GO:0005515: protein binding	3.87E-02
40	GO:0030246: carbohydrate binding	4.81E-02
41	GO:0004674: protein serine/threonine kinase activity	4.99E-02

Rank	GO Term	Adjusted P value
1	GO:0098572: stromal side of plastid thylakoid membrane	0.00E+00
2	GO:0010007: magnesium chelatase complex	1.31E-07
3	GO:0080085: signal recognition particle, chloroplast targeting	5.37E-05
4	GO:0009534: chloroplast thylakoid	8.06E-05
5	GO:0009331: glycerol-3-phosphate dehydrogenase complex	1.42E-04
6	GO:0005719: nuclear euchromatin	1.42E-04
7	GO:0005618: cell wall	3.06E-04
8	GO:0009986: cell surface	4.37E-04
9	GO:0005786: signal recognition particle, endoplasmic reticulum targeting	5.74E-04
10	GO:0042644: chloroplast nucleoid	6.45E-04
11	GO:0015030: Cajal body	7.18E-04
12	GO:0009570: chloroplast stroma	7.57E-04
13	GO:0090404: pollen tube tip	8.71E-04
14	GO:0009508: plastid chromosome	1.03E-03
15	GO:0005578: proteinaceous extracellular matrix	1.03E-03
16	GO:0009507: chloroplast	1.94E-03
17	GO:0009505: plant-type cell wall	1.97E-03
18	GO:0009295: nucleoid	2.96E-03
19	GO:0030529: intracellular ribonucleoprotein complex	3.21E-03
20	GO:0031977: thylakoid lumen	5.07E-03
21	GO:0009706: chloroplast inner membrane	8.42E-03
22	GO:0005768: endosome	9.12E-03
23	GO:0005654: nucleoplasm	9.67E-03
24	GO:0009543: chloroplast thylakoid lumen	9.85E-03
25	GO:0005576: extracellular region	1.01E-02
26	GO:0046658: anchored component of plasma membrane	1.51E-02
27	GO:0009535: chloroplast thylakoid membrane	2.28E-02
28	GO:0043231: intracellular membrane-bounded organelle	2.78E-02
29	GO:0016020: membrane	2.87E-02
30	GO:0009579: thylakoid	4.43E-02
31	GO:0009941: chloroplast envelope	4.77E-02