co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT2G19130

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0060213: positive regulation of nuclear-transcribed mRNA poly(A) tail shortening	0.00E+00
2	GO:0000390: spliceosomal complex disassembly	0.00E+00
3	GO:0019484: beta-alanine catabolic process	0.00E+00
4	GO:0010398: xylogalacturonan metabolic process	0.00E+00
5	GO:0009448: gamma-aminobutyric acid metabolic process	0.00E+00
6	GO:0006105: succinate metabolic process	0.00E+00
7	GO:0006987: activation of signaling protein activity involved in unfolded protein response	0.00E+00
8	GO:0051788: response to misfolded protein	7.73E-07
9	GO:0043248: proteasome assembly	3.20E-05
10	GO:0071366: cellular response to indolebutyric acid stimulus	1.23E-04
11	GO:0046520: sphingoid biosynthetic process	1.23E-04
12	GO:0019673: GDP-mannose metabolic process	1.23E-04
13	GO:0009865: pollen tube adhesion	1.23E-04
14	GO:0006540: glutamate decarboxylation to succinate	1.23E-04
15	GO:0000291: nuclear-transcribed mRNA catabolic process, exonucleolytic	1.23E-04
16	GO:0048455: stamen formation	1.23E-04
17	GO:0035266: meristem growth	1.23E-04
18	GO:0009450: gamma-aminobutyric acid catabolic process	1.23E-04
19	GO:0007292: female gamete generation	1.23E-04
20	GO:0010184: cytokinin transport	1.23E-04
21	GO:0006995: cellular response to nitrogen starvation	1.75E-04
22	GO:0052544: defense response by callose deposition in cell wall	2.05E-04
23	GO:0045948: positive regulation of translational initiation	2.86E-04
24	GO:0010033: response to organic substance	2.86E-04
25	GO:0042344: indole glucosinolate catabolic process	4.72E-04
26	GO:0042351: 'de novo' GDP-L-fucose biosynthetic process	4.72E-04
27	GO:0060968: regulation of gene silencing	4.72E-04
28	GO:0002679: respiratory burst involved in defense response	6.76E-04
29	GO:0071786: endoplasmic reticulum tubular network organization	6.76E-04
30	GO:0006882: cellular zinc ion homeostasis	6.76E-04
31	GO:0006020: inositol metabolic process	6.76E-04
32	GO:2001289: lipid X metabolic process	6.76E-04
33	GO:0070301: cellular response to hydrogen peroxide	6.76E-04
34	GO:0072334: UDP-galactose transmembrane transport	6.76E-04
35	GO:0009399: nitrogen fixation	6.76E-04
36	GO:0072583: clathrin-dependent endocytosis	6.76E-04
37	GO:0006878: cellular copper ion homeostasis	8.97E-04
38	GO:0006542: glutamine biosynthetic process	8.97E-04
39	GO:0048830: adventitious root development	8.97E-04
40	GO:0006536: glutamate metabolic process	8.97E-04
41	GO:0042273: ribosomal large subunit biogenesis	8.97E-04
42	GO:0006891: intra-Golgi vesicle-mediated transport	1.02E-03
43	GO:0007029: endoplasmic reticulum organization	1.13E-03
44	GO:0009759: indole glucosinolate biosynthetic process	1.39E-03
45	GO:0045899: positive regulation of RNA polymerase II transcriptional preinitiation complex assembly	1.39E-03
46	GO:0015691: cadmium ion transport	1.39E-03
47	GO:0048827: phyllome development	1.39E-03
48	GO:0048232: male gamete generation	1.39E-03
49	GO:0031930: mitochondria-nucleus signaling pathway	1.66E-03
50	GO:0048280: vesicle fusion with Golgi apparatus	1.66E-03
51	GO:0006333: chromatin assembly or disassembly	1.95E-03
52	GO:0048528: post-embryonic root development	1.95E-03
53	GO:0009415: response to water	2.26E-03
54	GO:0010078: maintenance of root meristem identity	2.26E-03
55	GO:0006367: transcription initiation from RNA polymerase II promoter	2.58E-03
56	GO:0030968: endoplasmic reticulum unfolded protein response	2.58E-03
57	GO:0051865: protein autoubiquitination	2.91E-03
58	GO:0046916: cellular transition metal ion homeostasis	2.91E-03
59	GO:0009862: systemic acquired resistance, salicylic acid mediated signaling pathway	3.26E-03
60	GO:0048829: root cap development	3.62E-03
61	GO:0009641: shade avoidance	3.62E-03
62	GO:0009970: cellular response to sulfate starvation	3.62E-03
63	GO:0006896: Golgi to vacuole transport	3.62E-03
64	GO:0043085: positive regulation of catalytic activity	4.00E-03
65	GO:0009684: indoleacetic acid biosynthetic process	4.00E-03
66	GO:0010015: root morphogenesis	4.00E-03
67	GO:0009682: induced systemic resistance	4.00E-03
68	GO:0071365: cellular response to auxin stimulus	4.39E-03
69	GO:0010102: lateral root morphogenesis	4.79E-03
70	GO:2000012: regulation of auxin polar transport	4.79E-03
71	GO:0048367: shoot system development	5.00E-03
72	GO:0009933: meristem structural organization	5.20E-03
73	GO:0006446: regulation of translational initiation	5.20E-03
74	GO:0006541: glutamine metabolic process	5.20E-03
75	GO:0005985: sucrose metabolic process	5.63E-03
76	GO:0090351: seedling development	5.63E-03
77	GO:0009225: nucleotide-sugar metabolic process	5.63E-03
78	GO:0006863: purine nucleobase transport	6.06E-03
79	GO:0000162: tryptophan biosynthetic process	6.06E-03
80	GO:0045333: cellular respiration	6.51E-03
81	GO:0009269: response to desiccation	7.45E-03
82	GO:0030433: ubiquitin-dependent ERAD pathway	7.93E-03
83	GO:0031348: negative regulation of defense response	7.93E-03
84	GO:0006012: galactose metabolic process	8.43E-03
85	GO:0042147: retrograde transport, endosome to Golgi	9.45E-03
86	GO:0042391: regulation of membrane potential	9.99E-03
87	GO:0000413: protein peptidyl-prolyl isomerization	9.99E-03
88	GO:0010150: leaf senescence	1.01E-02
89	GO:0010154: fruit development	1.05E-02
90	GO:0045489: pectin biosynthetic process	1.05E-02
91	GO:0048544: recognition of pollen	1.11E-02
92	GO:0042752: regulation of circadian rhythm	1.11E-02
93	GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process	1.13E-02
94	GO:0009409: response to cold	1.15E-02
95	GO:0006623: protein targeting to vacuole	1.16E-02
96	GO:0010183: pollen tube guidance	1.16E-02
97	GO:0006635: fatty acid beta-oxidation	1.22E-02
98	GO:0009630: gravitropism	1.28E-02
99	GO:0030163: protein catabolic process	1.34E-02
100	GO:0006914: autophagy	1.40E-02
101	GO:0006904: vesicle docking involved in exocytosis	1.46E-02
102	GO:0010286: heat acclimation	1.46E-02
103	GO:0001666: response to hypoxia	1.58E-02
104	GO:0010029: regulation of seed germination	1.65E-02
105	GO:0009816: defense response to bacterium, incompatible interaction	1.65E-02
106	GO:0006974: cellular response to DNA damage stimulus	1.71E-02
107	GO:0009627: systemic acquired resistance	1.71E-02
108	GO:0042128: nitrate assimilation	1.71E-02
109	GO:0006888: ER to Golgi vesicle-mediated transport	1.78E-02
110	GO:0048573: photoperiodism, flowering	1.78E-02
111	GO:0048366: leaf development	1.84E-02
112	GO:0016049: cell growth	1.85E-02
113	GO:0009817: defense response to fungus, incompatible interaction	1.91E-02
114	GO:0010311: lateral root formation	1.98E-02
115	GO:0048767: root hair elongation	1.98E-02
116	GO:0006499: N-terminal protein myristoylation	2.05E-02
117	GO:0006811: ion transport	2.05E-02
118	GO:0046777: protein autophosphorylation	2.08E-02
119	GO:0009631: cold acclimation	2.12E-02
120	GO:0045087: innate immune response	2.26E-02
121	GO:0016051: carbohydrate biosynthetic process	2.26E-02
122	GO:0006099: tricarboxylic acid cycle	2.34E-02
123	GO:0006886: intracellular protein transport	2.40E-02
124	GO:0030001: metal ion transport	2.48E-02
125	GO:0006887: exocytosis	2.56E-02
126	GO:0042542: response to hydrogen peroxide	2.63E-02
127	GO:0009640: photomorphogenesis	2.71E-02
128	GO:0010114: response to red light	2.71E-02
129	GO:0009744: response to sucrose	2.71E-02
130	GO:0042742: defense response to bacterium	2.82E-02
131	GO:0009408: response to heat	2.87E-02
132	GO:0009965: leaf morphogenesis	2.95E-02
133	GO:0048364: root development	2.99E-02
134	GO:0006397: mRNA processing	2.99E-02
135	GO:0006855: drug transmembrane transport	3.03E-02
136	GO:0055114: oxidation-reduction process	3.17E-02
137	GO:0006096: glycolytic process	3.78E-02
138	GO:0009626: plant-type hypersensitive response	3.95E-02
139	GO:0042545: cell wall modification	4.22E-02
140	GO:0018105: peptidyl-serine phosphorylation	4.40E-02
141	GO:0006396: RNA processing	4.40E-02
142	GO:0000398: mRNA splicing, via spliceosome	4.77E-02
143	GO:0046686: response to cadmium ion	4.87E-02

Rank	GO Term	Adjusted P value
1	GO:0034387: 4-aminobutyrate:pyruvate transaminase activity	0.00E+00
2	GO:0015211: purine nucleoside transmembrane transporter activity	0.00E+00
3	GO:0102983: xylogalacturonan beta-1,3-xylosyltransferase activity	0.00E+00
4	GO:1990446: U1 snRNP binding	0.00E+00
5	GO:0015370: solute:sodium symporter activity	0.00E+00
6	GO:0019211: phosphatase activator activity	0.00E+00
7	GO:0046964: 3'-phosphoadenosine 5'-phosphosulfate transmembrane transporter activity	1.23E-04
8	GO:0032050: clathrin heavy chain binding	1.23E-04
9	GO:0000170: sphingosine hydroxylase activity	1.23E-04
10	GO:0046870: cadmium ion binding	1.23E-04
11	GO:0008446: GDP-mannose 4,6-dehydratase activity	1.23E-04
12	GO:0003867: 4-aminobutyrate transaminase activity	1.23E-04
13	GO:0032791: lead ion binding	2.86E-04
14	GO:0042284: sphingolipid delta-4 desaturase activity	2.86E-04
15	GO:0003955: NAD(P)H dehydrogenase (quinone) activity	4.72E-04
16	GO:0004096: catalase activity	4.72E-04
17	GO:0015086: cadmium ion transmembrane transporter activity	6.76E-04
18	GO:0004108: citrate (Si)-synthase activity	6.76E-04
19	GO:0030527: structural constituent of chromatin	6.76E-04
20	GO:0001653: peptide receptor activity	6.76E-04
21	GO:0050378: UDP-glucuronate 4-epimerase activity	8.97E-04
22	GO:0009916: alternative oxidase activity	8.97E-04
23	GO:0015204: urea transmembrane transporter activity	8.97E-04
24	GO:0004737: pyruvate decarboxylase activity	8.97E-04
25	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	8.97E-04
26	GO:0004356: glutamate-ammonia ligase activity	1.13E-03
27	GO:0005459: UDP-galactose transmembrane transporter activity	1.13E-03
28	GO:0031369: translation initiation factor binding	1.39E-03
29	GO:0031593: polyubiquitin binding	1.39E-03
30	GO:0035252: UDP-xylosyltransferase activity	1.39E-03
31	GO:0036402: proteasome-activating ATPase activity	1.39E-03
32	GO:0030976: thiamine pyrophosphate binding	1.39E-03
33	GO:0004012: phospholipid-translocating ATPase activity	1.66E-03
34	GO:0003730: mRNA 3'-UTR binding	1.66E-03
35	GO:0003950: NAD+ ADP-ribosyltransferase activity	1.66E-03
36	GO:0016831: carboxy-lyase activity	1.95E-03
37	GO:0050897: cobalt ion binding	2.17E-03
38	GO:0004525: ribonuclease III activity	2.26E-03
39	GO:0004034: aldose 1-epimerase activity	2.26E-03
40	GO:0000287: magnesium ion binding	2.54E-03
41	GO:0030955: potassium ion binding	3.26E-03
42	GO:0004743: pyruvate kinase activity	3.26E-03
43	GO:0015020: glucuronosyltransferase activity	3.62E-03
44	GO:0004521: endoribonuclease activity	4.39E-03
45	GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism	4.79E-03
46	GO:0017025: TBP-class protein binding	5.63E-03
47	GO:0030552: cAMP binding	5.63E-03
48	GO:0030553: cGMP binding	5.63E-03
49	GO:0005216: ion channel activity	6.98E-03
50	GO:0005345: purine nucleobase transmembrane transporter activity	6.98E-03
51	GO:0005506: iron ion binding	7.08E-03
52	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	7.49E-03
53	GO:0016779: nucleotidyltransferase activity	7.93E-03
54	GO:0003727: single-stranded RNA binding	8.93E-03
55	GO:0005249: voltage-gated potassium channel activity	9.99E-03
56	GO:0030551: cyclic nucleotide binding	9.99E-03
57	GO:0010181: FMN binding	1.11E-02
58	GO:0050662: coenzyme binding	1.11E-02
59	GO:0016853: isomerase activity	1.11E-02
60	GO:0004872: receptor activity	1.16E-02
61	GO:0042626: ATPase activity, coupled to transmembrane movement of substances	1.28E-02
62	GO:0003729: mRNA binding	1.32E-02
63	GO:0020037: heme binding	1.44E-02
64	GO:0046982: protein heterodimerization activity	1.54E-02
65	GO:0030246: carbohydrate binding	1.69E-02
66	GO:0008375: acetylglucosaminyltransferase activity	1.71E-02
67	GO:0009931: calcium-dependent protein serine/threonine kinase activity	1.71E-02
68	GO:0004683: calmodulin-dependent protein kinase activity	1.78E-02
69	GO:0005507: copper ion binding	1.82E-02
70	GO:0004497: monooxygenase activity	1.94E-02
71	GO:0005516: calmodulin binding	1.95E-02
72	GO:0003697: single-stranded DNA binding	2.26E-02
73	GO:0000149: SNARE binding	2.41E-02
74	GO:0004722: protein serine/threonine phosphatase activity	2.55E-02
75	GO:0005484: SNAP receptor activity	2.71E-02
76	GO:0004674: protein serine/threonine kinase activity	2.80E-02
77	GO:0015293: symporter activity	2.95E-02
78	GO:0005198: structural molecule activity	2.95E-02
79	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	3.03E-02
80	GO:0003824: catalytic activity	3.17E-02
81	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	3.35E-02
82	GO:0045330: aspartyl esterase activity	3.60E-02
83	GO:0045735: nutrient reservoir activity	3.78E-02
84	GO:0030599: pectinesterase activity	4.13E-02
85	GO:0016301: kinase activity	4.19E-02
86	GO:0016887: ATPase activity	4.43E-02

Rank	GO Term	Adjusted P value
1	GO:0031981: nuclear lumen	0.00E+00
2	GO:0071008: U2-type post-mRNA release spliceosomal complex	0.00E+00
3	GO:0005789: endoplasmic reticulum membrane	5.81E-06
4	GO:0005886: plasma membrane	7.43E-06
5	GO:0005794: Golgi apparatus	5.08E-05
6	GO:0005783: endoplasmic reticulum	6.23E-05
7	GO:0008540: proteasome regulatory particle, base subcomplex	1.48E-04
8	GO:0016021: integral component of membrane	2.57E-04
9	GO:0042406: extrinsic component of endoplasmic reticulum membrane	4.72E-04
10	GO:0071782: endoplasmic reticulum tubular network	6.76E-04
11	GO:0005776: autophagosome	8.97E-04
12	GO:0005802: trans-Golgi network	1.17E-03
13	GO:0030140: trans-Golgi network transport vesicle	1.39E-03
14	GO:0031597: cytosolic proteasome complex	1.66E-03
15	GO:0030173: integral component of Golgi membrane	1.66E-03
16	GO:0016363: nuclear matrix	1.66E-03
17	GO:0031595: nuclear proteasome complex	1.95E-03
18	GO:0030687: preribosome, large subunit precursor	1.95E-03
19	GO:0071458: integral component of cytoplasmic side of endoplasmic reticulum membrane	2.26E-03
20	GO:0012507: ER to Golgi transport vesicle membrane	2.26E-03
21	GO:0000786: nucleosome	2.28E-03
22	GO:0031902: late endosome membrane	2.82E-03
23	GO:0030125: clathrin vesicle coat	3.62E-03
24	GO:0000502: proteasome complex	4.11E-03
25	GO:0005665: DNA-directed RNA polymerase II, core complex	4.39E-03
26	GO:0005774: vacuolar membrane	4.86E-03
27	GO:0010008: endosome membrane	5.00E-03
28	GO:0030176: integral component of endoplasmic reticulum membrane	5.63E-03
29	GO:0005795: Golgi stack	5.63E-03
30	GO:0005768: endosome	6.17E-03
31	GO:0016020: membrane	6.79E-03
32	GO:0070469: respiratory chain	6.98E-03
33	GO:0031410: cytoplasmic vesicle	7.93E-03
34	GO:0005887: integral component of plasma membrane	8.25E-03
35	GO:0005770: late endosome	1.05E-02
36	GO:0000139: Golgi membrane	1.15E-02
37	GO:0031965: nuclear membrane	1.16E-02
38	GO:0000785: chromatin	1.28E-02
39	GO:0000145: exocyst	1.28E-02
40	GO:0071944: cell periphery	1.34E-02
41	GO:0005777: peroxisome	1.38E-02
42	GO:0032580: Golgi cisterna membrane	1.40E-02
43	GO:0000932: P-body	1.58E-02
44	GO:0005618: cell wall	1.94E-02
45	GO:0000325: plant-type vacuole	2.12E-02
46	GO:0031201: SNARE complex	2.56E-02
47	GO:0009505: plant-type cell wall	3.73E-02
48	GO:0005829: cytosol	3.81E-02
49	GO:0022626: cytosolic ribosome	4.84E-02