GO Enrichment Analysis of Co-expressed Genes with
AT2G17972
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0002184: cytoplasmic translational termination | 0.00E+00 |
| 2 | GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate | 0.00E+00 |
| 3 | GO:0006780: uroporphyrinogen III biosynthetic process | 0.00E+00 |
| 4 | GO:0061635: regulation of protein complex stability | 0.00E+00 |
| 5 | GO:0042821: pyridoxal biosynthetic process | 0.00E+00 |
| 6 | GO:0015805: S-adenosyl-L-methionine transport | 0.00E+00 |
| 7 | GO:0042820: vitamin B6 catabolic process | 0.00E+00 |
| 8 | GO:1904966: positive regulation of vitamin E biosynthetic process | 0.00E+00 |
| 9 | GO:1904964: positive regulation of phytol biosynthetic process | 0.00E+00 |
| 10 | GO:0042493: response to drug | 0.00E+00 |
| 11 | GO:0006399: tRNA metabolic process | 0.00E+00 |
| 12 | GO:0015979: photosynthesis | 4.84E-18 |
| 13 | GO:0009773: photosynthetic electron transport in photosystem I | 4.99E-11 |
| 14 | GO:0042254: ribosome biogenesis | 1.16E-10 |
| 15 | GO:0032544: plastid translation | 6.97E-10 |
| 16 | GO:0006412: translation | 1.05E-09 |
| 17 | GO:0010027: thylakoid membrane organization | 5.56E-08 |
| 18 | GO:0009735: response to cytokinin | 3.84E-07 |
| 19 | GO:0009658: chloroplast organization | 5.78E-07 |
| 20 | GO:0030388: fructose 1,6-bisphosphate metabolic process | 3.29E-06 |
| 21 | GO:1902326: positive regulation of chlorophyll biosynthetic process | 3.29E-06 |
| 22 | GO:0010196: nonphotochemical quenching | 3.90E-06 |
| 23 | GO:0006000: fructose metabolic process | 1.18E-05 |
| 24 | GO:0090391: granum assembly | 1.18E-05 |
| 25 | GO:0005986: sucrose biosynthetic process | 4.22E-05 |
| 26 | GO:0015995: chlorophyll biosynthetic process | 5.75E-05 |
| 27 | GO:0009772: photosynthetic electron transport in photosystem II | 2.02E-04 |
| 28 | GO:0071588: hydrogen peroxide mediated signaling pathway | 2.68E-04 |
| 29 | GO:0009443: pyridoxal 5'-phosphate salvage | 2.68E-04 |
| 30 | GO:0042759: long-chain fatty acid biosynthetic process | 2.68E-04 |
| 31 | GO:0042371: vitamin K biosynthetic process | 2.68E-04 |
| 32 | GO:0006002: fructose 6-phosphate metabolic process | 3.14E-04 |
| 33 | GO:0080165: callose deposition in phloem sieve plate | 5.89E-04 |
| 34 | GO:0034755: iron ion transmembrane transport | 5.89E-04 |
| 35 | GO:0006568: tryptophan metabolic process | 5.89E-04 |
| 36 | GO:0018298: protein-chromophore linkage | 7.09E-04 |
| 37 | GO:0006094: gluconeogenesis | 7.86E-04 |
| 38 | GO:0019253: reductive pentose-phosphate cycle | 8.84E-04 |
| 39 | GO:0010207: photosystem II assembly | 8.84E-04 |
| 40 | GO:0051604: protein maturation | 9.55E-04 |
| 41 | GO:0071492: cellular response to UV-A | 9.55E-04 |
| 42 | GO:0005985: sucrose metabolic process | 9.87E-04 |
| 43 | GO:0051085: chaperone mediated protein folding requiring cofactor | 1.36E-03 |
| 44 | GO:0009152: purine ribonucleotide biosynthetic process | 1.36E-03 |
| 45 | GO:0046653: tetrahydrofolate metabolic process | 1.36E-03 |
| 46 | GO:0009650: UV protection | 1.36E-03 |
| 47 | GO:0006986: response to unfolded protein | 1.36E-03 |
| 48 | GO:2001141: regulation of RNA biosynthetic process | 1.36E-03 |
| 49 | GO:0061077: chaperone-mediated protein folding | 1.46E-03 |
| 50 | GO:0071486: cellular response to high light intensity | 1.83E-03 |
| 51 | GO:0009765: photosynthesis, light harvesting | 1.83E-03 |
| 52 | GO:0045727: positive regulation of translation | 1.83E-03 |
| 53 | GO:0015994: chlorophyll metabolic process | 1.83E-03 |
| 54 | GO:0000413: protein peptidyl-prolyl isomerization | 2.21E-03 |
| 55 | GO:0080110: sporopollenin biosynthetic process | 2.33E-03 |
| 56 | GO:0006564: L-serine biosynthetic process | 2.33E-03 |
| 57 | GO:0010236: plastoquinone biosynthetic process | 2.33E-03 |
| 58 | GO:0031365: N-terminal protein amino acid modification | 2.33E-03 |
| 59 | GO:0006461: protein complex assembly | 2.33E-03 |
| 60 | GO:0006810: transport | 2.56E-03 |
| 61 | GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway | 2.88E-03 |
| 62 | GO:0016554: cytidine to uridine editing | 2.88E-03 |
| 63 | GO:0032973: amino acid export | 2.88E-03 |
| 64 | GO:0042549: photosystem II stabilization | 2.88E-03 |
| 65 | GO:0042372: phylloquinone biosynthetic process | 3.46E-03 |
| 66 | GO:0010019: chloroplast-nucleus signaling pathway | 3.46E-03 |
| 67 | GO:0043090: amino acid import | 4.08E-03 |
| 68 | GO:0006400: tRNA modification | 4.08E-03 |
| 69 | GO:0009819: drought recovery | 4.73E-03 |
| 70 | GO:0006605: protein targeting | 4.73E-03 |
| 71 | GO:0016042: lipid catabolic process | 5.27E-03 |
| 72 | GO:0071482: cellular response to light stimulus | 5.42E-03 |
| 73 | GO:0009657: plastid organization | 5.42E-03 |
| 74 | GO:0006457: protein folding | 5.56E-03 |
| 75 | GO:0090305: nucleic acid phosphodiester bond hydrolysis | 6.14E-03 |
| 76 | GO:0010206: photosystem II repair | 6.14E-03 |
| 77 | GO:0080144: amino acid homeostasis | 6.14E-03 |
| 78 | GO:0000373: Group II intron splicing | 6.14E-03 |
| 79 | GO:0006779: porphyrin-containing compound biosynthetic process | 6.90E-03 |
| 80 | GO:1900865: chloroplast RNA modification | 6.90E-03 |
| 81 | GO:0009637: response to blue light | 7.02E-03 |
| 82 | GO:0034599: cellular response to oxidative stress | 7.34E-03 |
| 83 | GO:0006782: protoporphyrinogen IX biosynthetic process | 7.68E-03 |
| 84 | GO:0006415: translational termination | 8.50E-03 |
| 85 | GO:0043085: positive regulation of catalytic activity | 8.50E-03 |
| 86 | GO:0006879: cellular iron ion homeostasis | 8.50E-03 |
| 87 | GO:0006352: DNA-templated transcription, initiation | 8.50E-03 |
| 88 | GO:0009750: response to fructose | 8.50E-03 |
| 89 | GO:0010114: response to red light | 9.06E-03 |
| 90 | GO:0005983: starch catabolic process | 9.35E-03 |
| 91 | GO:0016024: CDP-diacylglycerol biosynthetic process | 9.35E-03 |
| 92 | GO:0006006: glucose metabolic process | 1.02E-02 |
| 93 | GO:0010143: cutin biosynthetic process | 1.11E-02 |
| 94 | GO:0042742: defense response to bacterium | 1.21E-02 |
| 95 | GO:0006364: rRNA processing | 1.22E-02 |
| 96 | GO:0010025: wax biosynthetic process | 1.30E-02 |
| 97 | GO:0000027: ribosomal large subunit assembly | 1.40E-02 |
| 98 | GO:0019953: sexual reproduction | 1.50E-02 |
| 99 | GO:0007017: microtubule-based process | 1.50E-02 |
| 100 | GO:0009768: photosynthesis, light harvesting in photosystem I | 1.50E-02 |
| 101 | GO:0030245: cellulose catabolic process | 1.71E-02 |
| 102 | GO:0016226: iron-sulfur cluster assembly | 1.71E-02 |
| 103 | GO:0009411: response to UV | 1.82E-02 |
| 104 | GO:0009793: embryo development ending in seed dormancy | 1.89E-02 |
| 105 | GO:0010584: pollen exine formation | 1.94E-02 |
| 106 | GO:0009306: protein secretion | 1.94E-02 |
| 107 | GO:0009409: response to cold | 2.03E-02 |
| 108 | GO:0006662: glycerol ether metabolic process | 2.29E-02 |
| 109 | GO:0048544: recognition of pollen | 2.41E-02 |
| 110 | GO:0015986: ATP synthesis coupled proton transport | 2.41E-02 |
| 111 | GO:0042744: hydrogen peroxide catabolic process | 2.49E-02 |
| 112 | GO:0009790: embryo development | 2.56E-02 |
| 113 | GO:0000302: response to reactive oxygen species | 2.65E-02 |
| 114 | GO:0006413: translational initiation | 2.82E-02 |
| 115 | GO:0009451: RNA modification | 3.09E-02 |
| 116 | GO:0016311: dephosphorylation | 4.02E-02 |
| 117 | GO:0009817: defense response to fungus, incompatible interaction | 4.17E-02 |
| 118 | GO:0009407: toxin catabolic process | 4.47E-02 |
| 119 | GO:0010218: response to far red light | 4.47E-02 |
| 120 | GO:0009631: cold acclimation | 4.62E-02 |
| 121 | GO:0007568: aging | 4.62E-02 |
| 122 | GO:0009853: photorespiration | 4.93E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity | 0.00E+00 |
| 2 | GO:0050236: pyridoxine:NADP 4-dehydrogenase activity | 0.00E+00 |
| 3 | GO:0050518: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity | 0.00E+00 |
| 4 | GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity | 0.00E+00 |
| 5 | GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity | 0.00E+00 |
| 6 | GO:0004852: uroporphyrinogen-III synthase activity | 0.00E+00 |
| 7 | GO:0102193: protein-ribulosamine 3-kinase activity | 0.00E+00 |
| 8 | GO:0019843: rRNA binding | 4.69E-14 |
| 9 | GO:0003735: structural constituent of ribosome | 2.67E-12 |
| 10 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 4.09E-11 |
| 11 | GO:0005528: FK506 binding | 5.09E-08 |
| 12 | GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity | 3.29E-06 |
| 13 | GO:0016168: chlorophyll binding | 4.68E-05 |
| 14 | GO:0043495: protein anchor | 4.83E-05 |
| 15 | GO:0022891: substrate-specific transmembrane transporter activity | 1.49E-04 |
| 16 | GO:0019899: enzyme binding | 2.02E-04 |
| 17 | GO:0005509: calcium ion binding | 2.51E-04 |
| 18 | GO:0004033: aldo-keto reductase (NADP) activity | 2.55E-04 |
| 19 | GO:0047381: dodecanoyl-[acyl-carrier-protein] hydrolase activity | 2.68E-04 |
| 20 | GO:0004425: indole-3-glycerol-phosphate synthase activity | 2.68E-04 |
| 21 | GO:0016788: hydrolase activity, acting on ester bonds | 4.60E-04 |
| 22 | GO:0004617: phosphoglycerate dehydrogenase activity | 5.89E-04 |
| 23 | GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity | 5.89E-04 |
| 24 | GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity | 5.89E-04 |
| 25 | GO:0016630: protochlorophyllide reductase activity | 5.89E-04 |
| 26 | GO:0047746: chlorophyllase activity | 5.89E-04 |
| 27 | GO:0008266: poly(U) RNA binding | 8.84E-04 |
| 28 | GO:0016295: myristoyl-[acyl-carrier-protein] hydrolase activity | 9.55E-04 |
| 29 | GO:0016742: hydroxymethyl-, formyl- and related transferase activity | 9.55E-04 |
| 30 | GO:0070402: NADPH binding | 9.55E-04 |
| 31 | GO:0008864: formyltetrahydrofolate deformylase activity | 9.55E-04 |
| 32 | GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor | 9.55E-04 |
| 33 | GO:0016296: palmitoyl-[acyl-carrier-protein] hydrolase activity | 9.55E-04 |
| 34 | GO:0001872: (1->3)-beta-D-glucan binding | 1.36E-03 |
| 35 | GO:0016851: magnesium chelatase activity | 1.36E-03 |
| 36 | GO:0016149: translation release factor activity, codon specific | 1.36E-03 |
| 37 | GO:0043023: ribosomal large subunit binding | 1.36E-03 |
| 38 | GO:0008097: 5S rRNA binding | 1.36E-03 |
| 39 | GO:0016987: sigma factor activity | 1.83E-03 |
| 40 | GO:1990137: plant seed peroxidase activity | 1.83E-03 |
| 41 | GO:0004659: prenyltransferase activity | 1.83E-03 |
| 42 | GO:0001053: plastid sigma factor activity | 1.83E-03 |
| 43 | GO:0016773: phosphotransferase activity, alcohol group as acceptor | 2.33E-03 |
| 44 | GO:0003959: NADPH dehydrogenase activity | 2.33E-03 |
| 45 | GO:0050662: coenzyme binding | 2.56E-03 |
| 46 | GO:0004130: cytochrome-c peroxidase activity | 2.88E-03 |
| 47 | GO:0004366: glycerol-3-phosphate O-acyltransferase activity | 2.88E-03 |
| 48 | GO:0016688: L-ascorbate peroxidase activity | 2.88E-03 |
| 49 | GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity | 2.88E-03 |
| 50 | GO:0051920: peroxiredoxin activity | 3.46E-03 |
| 51 | GO:0004723: calcium-dependent protein serine/threonine phosphatase activity | 3.46E-03 |
| 52 | GO:0016157: sucrose synthase activity | 3.46E-03 |
| 53 | GO:0052689: carboxylic ester hydrolase activity | 3.54E-03 |
| 54 | GO:0008235: metalloexopeptidase activity | 4.08E-03 |
| 55 | GO:0016209: antioxidant activity | 4.73E-03 |
| 56 | GO:0043022: ribosome binding | 4.73E-03 |
| 57 | GO:0008236: serine-type peptidase activity | 5.26E-03 |
| 58 | GO:0003747: translation release factor activity | 6.14E-03 |
| 59 | GO:0005381: iron ion transmembrane transporter activity | 6.90E-03 |
| 60 | GO:0047617: acyl-CoA hydrolase activity | 6.90E-03 |
| 61 | GO:0003723: RNA binding | 7.62E-03 |
| 62 | GO:0008047: enzyme activator activity | 7.68E-03 |
| 63 | GO:0004177: aminopeptidase activity | 8.50E-03 |
| 64 | GO:0004565: beta-galactosidase activity | 1.02E-02 |
| 65 | GO:0031072: heat shock protein binding | 1.02E-02 |
| 66 | GO:0046872: metal ion binding | 1.03E-02 |
| 67 | GO:0004601: peroxidase activity | 1.04E-02 |
| 68 | GO:0051287: NAD binding | 1.10E-02 |
| 69 | GO:0031409: pigment binding | 1.30E-02 |
| 70 | GO:0051536: iron-sulfur cluster binding | 1.40E-02 |
| 71 | GO:0043424: protein histidine kinase binding | 1.50E-02 |
| 72 | GO:0051087: chaperone binding | 1.50E-02 |
| 73 | GO:0051082: unfolded protein binding | 1.75E-02 |
| 74 | GO:0016746: transferase activity, transferring acyl groups | 1.80E-02 |
| 75 | GO:0030570: pectate lyase activity | 1.82E-02 |
| 76 | GO:0008810: cellulase activity | 1.82E-02 |
| 77 | GO:0047134: protein-disulfide reductase activity | 2.05E-02 |
| 78 | GO:0008080: N-acetyltransferase activity | 2.29E-02 |
| 79 | GO:0046933: proton-transporting ATP synthase activity, rotational mechanism | 2.29E-02 |
| 80 | GO:0004791: thioredoxin-disulfide reductase activity | 2.41E-02 |
| 81 | GO:0009055: electron carrier activity | 2.45E-02 |
| 82 | GO:0004519: endonuclease activity | 2.49E-02 |
| 83 | GO:0004518: nuclease activity | 2.78E-02 |
| 84 | GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor | 2.91E-02 |
| 85 | GO:0016791: phosphatase activity | 3.04E-02 |
| 86 | GO:0005200: structural constituent of cytoskeleton | 3.18E-02 |
| 87 | GO:0016597: amino acid binding | 3.31E-02 |
| 88 | GO:0003743: translation initiation factor activity | 3.53E-02 |
| 89 | GO:0042802: identical protein binding | 3.83E-02 |
| 90 | GO:0030247: polysaccharide binding | 3.88E-02 |
| 91 | GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity | 4.17E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0044391: ribosomal subunit | 0.00E+00 |
| 2 | GO:0009515: granal stacked thylakoid | 0.00E+00 |
| 3 | GO:0009507: chloroplast | 1.77E-64 |
| 4 | GO:0009570: chloroplast stroma | 3.27E-31 |
| 5 | GO:0009579: thylakoid | 4.85E-28 |
| 6 | GO:0009535: chloroplast thylakoid membrane | 9.13E-27 |
| 7 | GO:0009941: chloroplast envelope | 2.57E-24 |
| 8 | GO:0009543: chloroplast thylakoid lumen | 5.61E-24 |
| 9 | GO:0031977: thylakoid lumen | 1.66E-18 |
| 10 | GO:0009534: chloroplast thylakoid | 6.70E-17 |
| 11 | GO:0005840: ribosome | 1.04E-14 |
| 12 | GO:0009654: photosystem II oxygen evolving complex | 1.01E-09 |
| 13 | GO:0019898: extrinsic component of membrane | 1.29E-08 |
| 14 | GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone) | 1.55E-07 |
| 15 | GO:0009523: photosystem II | 1.72E-05 |
| 16 | GO:0030095: chloroplast photosystem II | 5.12E-05 |
| 17 | GO:0009547: plastid ribosome | 2.68E-04 |
| 18 | GO:0010319: stromule | 4.36E-04 |
| 19 | GO:0000311: plastid large ribosomal subunit | 6.94E-04 |
| 20 | GO:0015934: large ribosomal subunit | 8.52E-04 |
| 21 | GO:0048046: apoplast | 9.46E-04 |
| 22 | GO:0010007: magnesium chelatase complex | 9.55E-04 |
| 23 | GO:0042651: thylakoid membrane | 1.33E-03 |
| 24 | GO:0015630: microtubule cytoskeleton | 1.36E-03 |
| 25 | GO:0009526: plastid envelope | 1.83E-03 |
| 26 | GO:0055035: plastid thylakoid membrane | 2.33E-03 |
| 27 | GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1) | 2.88E-03 |
| 28 | GO:0031969: chloroplast membrane | 3.04E-03 |
| 29 | GO:0016020: membrane | 3.26E-03 |
| 30 | GO:0010287: plastoglobule | 3.71E-03 |
| 31 | GO:0009533: chloroplast stromal thylakoid | 4.08E-03 |
| 32 | GO:0005811: lipid particle | 5.42E-03 |
| 33 | GO:0009536: plastid | 5.55E-03 |
| 34 | GO:0046658: anchored component of plasma membrane | 8.55E-03 |
| 35 | GO:0030076: light-harvesting complex | 1.21E-02 |
| 36 | GO:0015935: small ribosomal subunit | 1.61E-02 |
| 37 | GO:0009522: photosystem I | 2.41E-02 |
| 38 | GO:0031225: anchored component of membrane | 2.55E-02 |
| 39 | GO:0009295: nucleoid | 3.18E-02 |
| 40 | GO:0030529: intracellular ribonucleoprotein complex | 3.45E-02 |