GO Enrichment Analysis of Co-expressed Genes with
AT2G16600
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0009448: gamma-aminobutyric acid metabolic process | 0.00E+00 |
| 2 | GO:0080056: petal vascular tissue pattern formation | 0.00E+00 |
| 3 | GO:0006105: succinate metabolic process | 0.00E+00 |
| 4 | GO:0070482: response to oxygen levels | 0.00E+00 |
| 5 | GO:0080057: sepal vascular tissue pattern formation | 0.00E+00 |
| 6 | GO:0060213: positive regulation of nuclear-transcribed mRNA poly(A) tail shortening | 0.00E+00 |
| 7 | GO:0002191: cap-dependent translational initiation | 0.00E+00 |
| 8 | GO:0019484: beta-alanine catabolic process | 0.00E+00 |
| 9 | GO:0000478: endonucleolytic cleavage involved in rRNA processing | 0.00E+00 |
| 10 | GO:0010398: xylogalacturonan metabolic process | 0.00E+00 |
| 11 | GO:0071816: tail-anchored membrane protein insertion into ER membrane | 0.00E+00 |
| 12 | GO:0045900: negative regulation of translational elongation | 0.00E+00 |
| 13 | GO:0042273: ribosomal large subunit biogenesis | 8.22E-06 |
| 14 | GO:0035266: meristem growth | 9.50E-05 |
| 15 | GO:0009450: gamma-aminobutyric acid catabolic process | 9.50E-05 |
| 16 | GO:0007292: female gamete generation | 9.50E-05 |
| 17 | GO:0043687: post-translational protein modification | 9.50E-05 |
| 18 | GO:0009865: pollen tube adhesion | 9.50E-05 |
| 19 | GO:0032469: endoplasmic reticulum calcium ion homeostasis | 9.50E-05 |
| 20 | GO:0006540: glutamate decarboxylation to succinate | 9.50E-05 |
| 21 | GO:0000291: nuclear-transcribed mRNA catabolic process, exonucleolytic | 9.50E-05 |
| 22 | GO:0010033: response to organic substance | 2.24E-04 |
| 23 | GO:0051788: response to misfolded protein | 2.24E-04 |
| 24 | GO:0045948: positive regulation of translational initiation | 2.24E-04 |
| 25 | GO:0033512: L-lysine catabolic process to acetyl-CoA via saccharopine | 2.24E-04 |
| 26 | GO:0080009: mRNA methylation | 2.24E-04 |
| 27 | GO:0060968: regulation of gene silencing | 3.73E-04 |
| 28 | GO:0048367: shoot system development | 4.01E-04 |
| 29 | GO:0006020: inositol metabolic process | 5.37E-04 |
| 30 | GO:0048364: root development | 6.52E-04 |
| 31 | GO:0033320: UDP-D-xylose biosynthetic process | 7.14E-04 |
| 32 | GO:0006536: glutamate metabolic process | 7.14E-04 |
| 33 | GO:0019287: isopentenyl diphosphate biosynthetic process, mevalonate pathway | 7.14E-04 |
| 34 | GO:0098719: sodium ion import across plasma membrane | 9.02E-04 |
| 35 | GO:0018279: protein N-linked glycosylation via asparagine | 9.02E-04 |
| 36 | GO:0005513: detection of calcium ion | 9.02E-04 |
| 37 | GO:0007029: endoplasmic reticulum organization | 9.02E-04 |
| 38 | GO:0048232: male gamete generation | 1.10E-03 |
| 39 | GO:0043248: proteasome assembly | 1.10E-03 |
| 40 | GO:0042732: D-xylose metabolic process | 1.10E-03 |
| 41 | GO:0006014: D-ribose metabolic process | 1.10E-03 |
| 42 | GO:0045899: positive regulation of RNA polymerase II transcriptional preinitiation complex assembly | 1.10E-03 |
| 43 | GO:0001731: formation of translation preinitiation complex | 1.10E-03 |
| 44 | GO:0048827: phyllome development | 1.10E-03 |
| 45 | GO:0009612: response to mechanical stimulus | 1.31E-03 |
| 46 | GO:0006499: N-terminal protein myristoylation | 1.47E-03 |
| 47 | GO:0006614: SRP-dependent cotranslational protein targeting to membrane | 1.54E-03 |
| 48 | GO:0006099: tricarboxylic acid cycle | 1.75E-03 |
| 49 | GO:0006491: N-glycan processing | 1.78E-03 |
| 50 | GO:0010078: maintenance of root meristem identity | 1.78E-03 |
| 51 | GO:0006102: isocitrate metabolic process | 1.78E-03 |
| 52 | GO:0006972: hyperosmotic response | 2.03E-03 |
| 53 | GO:0006002: fructose 6-phosphate metabolic process | 2.03E-03 |
| 54 | GO:0006367: transcription initiation from RNA polymerase II promoter | 2.03E-03 |
| 55 | GO:0009051: pentose-phosphate shunt, oxidative branch | 2.29E-03 |
| 56 | GO:0051453: regulation of intracellular pH | 2.56E-03 |
| 57 | GO:0048829: root cap development | 2.85E-03 |
| 58 | GO:0006364: rRNA processing | 2.89E-03 |
| 59 | GO:0010015: root morphogenesis | 3.14E-03 |
| 60 | GO:0071365: cellular response to auxin stimulus | 3.44E-03 |
| 61 | GO:0010588: cotyledon vascular tissue pattern formation | 3.76E-03 |
| 62 | GO:0010102: lateral root morphogenesis | 3.76E-03 |
| 63 | GO:0006006: glucose metabolic process | 3.76E-03 |
| 64 | GO:0048467: gynoecium development | 4.08E-03 |
| 65 | GO:0006541: glutamine metabolic process | 4.08E-03 |
| 66 | GO:0009933: meristem structural organization | 4.08E-03 |
| 67 | GO:0006446: regulation of translational initiation | 4.08E-03 |
| 68 | GO:0006979: response to oxidative stress | 4.26E-03 |
| 69 | GO:0009225: nucleotide-sugar metabolic process | 4.41E-03 |
| 70 | GO:0005985: sucrose metabolic process | 4.41E-03 |
| 71 | GO:0090351: seedling development | 4.41E-03 |
| 72 | GO:0010053: root epidermal cell differentiation | 4.41E-03 |
| 73 | GO:0000162: tryptophan biosynthetic process | 4.75E-03 |
| 74 | GO:0034976: response to endoplasmic reticulum stress | 4.75E-03 |
| 75 | GO:0030433: ubiquitin-dependent ERAD pathway | 6.20E-03 |
| 76 | GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process | 7.90E-03 |
| 77 | GO:0045489: pectin biosynthetic process | 8.21E-03 |
| 78 | GO:0010154: fruit development | 8.21E-03 |
| 79 | GO:0010305: leaf vascular tissue pattern formation | 8.21E-03 |
| 80 | GO:0006885: regulation of pH | 8.21E-03 |
| 81 | GO:0046686: response to cadmium ion | 8.24E-03 |
| 82 | GO:0048544: recognition of pollen | 8.63E-03 |
| 83 | GO:0006814: sodium ion transport | 8.63E-03 |
| 84 | GO:0010183: pollen tube guidance | 9.06E-03 |
| 85 | GO:0019252: starch biosynthetic process | 9.06E-03 |
| 86 | GO:0071805: potassium ion transmembrane transport | 1.14E-02 |
| 87 | GO:0016126: sterol biosynthetic process | 1.23E-02 |
| 88 | GO:0048573: photoperiodism, flowering | 1.38E-02 |
| 89 | GO:0046777: protein autophosphorylation | 1.45E-02 |
| 90 | GO:0048767: root hair elongation | 1.54E-02 |
| 91 | GO:0010311: lateral root formation | 1.54E-02 |
| 92 | GO:0045454: cell redox homeostasis | 1.63E-02 |
| 93 | GO:0045087: innate immune response | 1.76E-02 |
| 94 | GO:0016051: carbohydrate biosynthetic process | 1.76E-02 |
| 95 | GO:0009965: leaf morphogenesis | 2.29E-02 |
| 96 | GO:0006812: cation transport | 2.47E-02 |
| 97 | GO:0006486: protein glycosylation | 2.60E-02 |
| 98 | GO:0006813: potassium ion transport | 2.60E-02 |
| 99 | GO:0006096: glycolytic process | 2.93E-02 |
| 100 | GO:0016569: covalent chromatin modification | 3.20E-02 |
| 101 | GO:0042545: cell wall modification | 3.27E-02 |
| 102 | GO:0018105: peptidyl-serine phosphorylation | 3.42E-02 |
| 103 | GO:0009742: brassinosteroid mediated signaling pathway | 3.49E-02 |
| 104 | GO:0009790: embryo development | 4.38E-02 |
| 105 | GO:0006633: fatty acid biosynthetic process | 4.61E-02 |
| 106 | GO:0006413: translational initiation | 4.69E-02 |
| 107 | GO:0045490: pectin catabolic process | 4.93E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0008901: ferredoxin hydrogenase activity | 0.00E+00 |
| 2 | GO:0004631: phosphomevalonate kinase activity | 0.00E+00 |
| 3 | GO:0098808: mRNA cap binding | 0.00E+00 |
| 4 | GO:0034387: 4-aminobutyrate:pyruvate transaminase activity | 0.00E+00 |
| 5 | GO:0102983: xylogalacturonan beta-1,3-xylosyltransferase activity | 0.00E+00 |
| 6 | GO:0004869: cysteine-type endopeptidase inhibitor activity | 5.25E-05 |
| 7 | GO:0016422: mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity | 9.50E-05 |
| 8 | GO:0003867: 4-aminobutyrate transaminase activity | 9.50E-05 |
| 9 | GO:0016274: protein-arginine N-methyltransferase activity | 9.50E-05 |
| 10 | GO:0004149: dihydrolipoyllysine-residue succinyltransferase activity | 9.50E-05 |
| 11 | GO:0005047: signal recognition particle binding | 3.73E-04 |
| 12 | GO:0004571: mannosyl-oligosaccharide 1,2-alpha-mannosidase activity | 5.37E-04 |
| 13 | GO:0004449: isocitrate dehydrogenase (NAD+) activity | 5.37E-04 |
| 14 | GO:0004834: tryptophan synthase activity | 7.14E-04 |
| 15 | GO:0004345: glucose-6-phosphate dehydrogenase activity | 7.14E-04 |
| 16 | GO:0004576: oligosaccharyl transferase activity | 7.14E-04 |
| 17 | GO:0015385: sodium:proton antiporter activity | 8.26E-04 |
| 18 | GO:0004579: dolichyl-diphosphooligosaccharide-protein glycotransferase activity | 9.02E-04 |
| 19 | GO:0048040: UDP-glucuronate decarboxylase activity | 1.10E-03 |
| 20 | GO:0031369: translation initiation factor binding | 1.10E-03 |
| 21 | GO:0035252: UDP-xylosyltransferase activity | 1.10E-03 |
| 22 | GO:0036402: proteasome-activating ATPase activity | 1.10E-03 |
| 23 | GO:0070403: NAD+ binding | 1.31E-03 |
| 24 | GO:0003950: NAD+ ADP-ribosyltransferase activity | 1.31E-03 |
| 25 | GO:0004747: ribokinase activity | 1.31E-03 |
| 26 | GO:0004559: alpha-mannosidase activity | 1.31E-03 |
| 27 | GO:0003872: 6-phosphofructokinase activity | 1.54E-03 |
| 28 | GO:0050897: cobalt ion binding | 1.54E-03 |
| 29 | GO:0008312: 7S RNA binding | 1.78E-03 |
| 30 | GO:0008865: fructokinase activity | 1.78E-03 |
| 31 | GO:0045309: protein phosphorylated amino acid binding | 2.56E-03 |
| 32 | GO:0003899: DNA-directed 5'-3' RNA polymerase activity | 2.89E-03 |
| 33 | GO:0015386: potassium:proton antiporter activity | 3.14E-03 |
| 34 | GO:0019904: protein domain specific binding | 3.14E-03 |
| 35 | GO:0005262: calcium channel activity | 3.76E-03 |
| 36 | GO:0016746: transferase activity, transferring acyl groups | 4.22E-03 |
| 37 | GO:0004867: serine-type endopeptidase inhibitor activity | 4.41E-03 |
| 38 | GO:0017025: TBP-class protein binding | 4.41E-03 |
| 39 | GO:0003756: protein disulfide isomerase activity | 6.98E-03 |
| 40 | GO:0003727: single-stranded RNA binding | 6.98E-03 |
| 41 | GO:0005451: monovalent cation:proton antiporter activity | 7.79E-03 |
| 42 | GO:0001085: RNA polymerase II transcription factor binding | 8.21E-03 |
| 43 | GO:0004527: exonuclease activity | 8.21E-03 |
| 44 | GO:0016853: isomerase activity | 8.63E-03 |
| 45 | GO:0015299: solute:proton antiporter activity | 8.63E-03 |
| 46 | GO:0009931: calcium-dependent protein serine/threonine kinase activity | 1.33E-02 |
| 47 | GO:0004683: calmodulin-dependent protein kinase activity | 1.38E-02 |
| 48 | GO:0008757: S-adenosylmethionine-dependent methyltransferase activity | 1.43E-02 |
| 49 | GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity | 1.49E-02 |
| 50 | GO:0005509: calcium ion binding | 1.63E-02 |
| 51 | GO:0001228: transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding | 1.65E-02 |
| 52 | GO:0003697: single-stranded DNA binding | 1.76E-02 |
| 53 | GO:0050661: NADP binding | 1.93E-02 |
| 54 | GO:0051539: 4 iron, 4 sulfur cluster binding | 1.93E-02 |
| 55 | GO:0043621: protein self-association | 2.23E-02 |
| 56 | GO:0045330: aspartyl esterase activity | 2.80E-02 |
| 57 | GO:0045735: nutrient reservoir activity | 2.93E-02 |
| 58 | GO:0003729: mRNA binding | 2.97E-02 |
| 59 | GO:0016887: ATPase activity | 3.11E-02 |
| 60 | GO:0030599: pectinesterase activity | 3.20E-02 |
| 61 | GO:0003676: nucleic acid binding | 3.51E-02 |
| 62 | GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen | 4.00E-02 |
| 63 | GO:0030170: pyridoxal phosphate binding | 4.23E-02 |
| 64 | GO:0000977: RNA polymerase II regulatory region sequence-specific DNA binding | 4.30E-02 |
| 65 | GO:0046910: pectinesterase inhibitor activity | 4.69E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0036396: MIS complex | 0.00E+00 |
| 2 | GO:0030687: preribosome, large subunit precursor | 4.01E-05 |
| 3 | GO:0005783: endoplasmic reticulum | 7.10E-05 |
| 4 | GO:0045252: oxoglutarate dehydrogenase complex | 9.50E-05 |
| 5 | GO:0005945: 6-phosphofructokinase complex | 9.02E-04 |
| 6 | GO:0008250: oligosaccharyltransferase complex | 9.02E-04 |
| 7 | GO:0016282: eukaryotic 43S preinitiation complex | 1.10E-03 |
| 8 | GO:0016363: nuclear matrix | 1.31E-03 |
| 9 | GO:0033290: eukaryotic 48S preinitiation complex | 1.31E-03 |
| 10 | GO:0031597: cytosolic proteasome complex | 1.31E-03 |
| 11 | GO:0031595: nuclear proteasome complex | 1.54E-03 |
| 12 | GO:0034399: nuclear periphery | 1.78E-03 |
| 13 | GO:0005786: signal recognition particle, endoplasmic reticulum targeting | 2.03E-03 |
| 14 | GO:0008540: proteasome regulatory particle, base subcomplex | 2.56E-03 |
| 15 | GO:0005829: cytosol | 2.81E-03 |
| 16 | GO:0005794: Golgi apparatus | 3.43E-03 |
| 17 | GO:0005665: DNA-directed RNA polymerase II, core complex | 3.44E-03 |
| 18 | GO:0030176: integral component of endoplasmic reticulum membrane | 4.41E-03 |
| 19 | GO:0005744: mitochondrial inner membrane presequence translocase complex | 6.98E-03 |
| 20 | GO:0005774: vacuolar membrane | 8.27E-03 |
| 21 | GO:0071944: cell periphery | 1.04E-02 |
| 22 | GO:0032580: Golgi cisterna membrane | 1.09E-02 |
| 23 | GO:0000932: P-body | 1.23E-02 |
| 24 | GO:0005788: endoplasmic reticulum lumen | 1.28E-02 |
| 25 | GO:0005667: transcription factor complex | 1.33E-02 |
| 26 | GO:0005768: endosome | 1.58E-02 |
| 27 | GO:0005739: mitochondrion | 1.75E-02 |
| 28 | GO:0031902: late endosome membrane | 1.99E-02 |
| 29 | GO:0000502: proteasome complex | 2.60E-02 |
| 30 | GO:0000139: Golgi membrane | 2.64E-02 |
| 31 | GO:0010008: endosome membrane | 3.00E-02 |
| 32 | GO:0005747: mitochondrial respiratory chain complex I | 3.00E-02 |
| 33 | GO:0016607: nuclear speck | 3.00E-02 |
| 34 | GO:0005789: endoplasmic reticulum membrane | 3.07E-02 |
| 35 | GO:0005623: cell | 4.00E-02 |