co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT2G15960

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:1904962: plastid to vacuole vesicle-mediated transport	0.00E+00
2	GO:0042906: xanthine transport	0.00E+00
3	GO:0071211: protein targeting to vacuole involved in autophagy	0.00E+00
4	GO:0030644: cellular chloride ion homeostasis	0.00E+00
5	GO:1903428: positive regulation of reactive oxygen species biosynthetic process	0.00E+00
6	GO:0070979: protein K11-linked ubiquitination	0.00E+00
7	GO:0010219: regulation of vernalization response	0.00E+00
8	GO:0009645: response to low light intensity stimulus	6.36E-07
9	GO:0018298: protein-chromophore linkage	9.19E-06
10	GO:0010600: regulation of auxin biosynthetic process	1.40E-05
11	GO:0009768: photosynthesis, light harvesting in photosystem I	2.04E-05
12	GO:0007623: circadian rhythm	2.05E-05
13	GO:0009644: response to high light intensity	2.98E-05
14	GO:0010244: response to low fluence blue light stimulus by blue low-fluence system	4.86E-05
15	GO:0010928: regulation of auxin mediated signaling pathway	8.48E-05
16	GO:0032958: inositol phosphate biosynthetic process	1.30E-04
17	GO:0006369: termination of RNA polymerase II transcription	1.30E-04
18	GO:0080065: 4-alpha-methyl-delta7-sterol oxidation	1.30E-04
19	GO:0010362: negative regulation of anion channel activity by blue light	1.30E-04
20	GO:0009817: defense response to fungus, incompatible interaction	1.86E-04
21	GO:0000160: phosphorelay signal transduction system	2.00E-04
22	GO:0009409: response to cold	2.04E-04
23	GO:0010218: response to far red light	2.14E-04
24	GO:0051170: nuclear import	2.99E-04
25	GO:0015857: uracil transport	2.99E-04
26	GO:1902884: positive regulation of response to oxidative stress	2.99E-04
27	GO:0015720: allantoin transport	2.99E-04
28	GO:0010155: regulation of proton transport	2.99E-04
29	GO:0006883: cellular sodium ion homeostasis	2.99E-04
30	GO:0048833: specification of floral organ number	2.99E-04
31	GO:0010114: response to red light	3.62E-04
32	GO:0008643: carbohydrate transport	4.01E-04
33	GO:0009414: response to water deprivation	4.53E-04
34	GO:0071705: nitrogen compound transport	4.92E-04
35	GO:0042344: indole glucosinolate catabolic process	4.92E-04
36	GO:0031145: anaphase-promoting complex-dependent catabolic process	4.92E-04
37	GO:1901562: response to paraquat	4.92E-04
38	GO:1902448: positive regulation of shade avoidance	4.92E-04
39	GO:0009269: response to desiccation	5.50E-04
40	GO:0051603: proteolysis involved in cellular protein catabolic process	5.54E-04
41	GO:0009416: response to light stimulus	5.78E-04
42	GO:0010017: red or far-red light signaling pathway	6.01E-04
43	GO:1901332: negative regulation of lateral root development	7.04E-04
44	GO:0006020: inositol metabolic process	7.04E-04
45	GO:0030071: regulation of mitotic metaphase/anaphase transition	7.04E-04
46	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	7.67E-04
47	GO:1901002: positive regulation of response to salt stress	9.34E-04
48	GO:0030104: water homeostasis	9.34E-04
49	GO:0048442: sepal development	9.34E-04
50	GO:0009765: photosynthesis, light harvesting	9.34E-04
51	GO:0009904: chloroplast accumulation movement	1.18E-03
52	GO:0032876: negative regulation of DNA endoreduplication	1.18E-03
53	GO:0010286: heat acclimation	1.38E-03
54	GO:0000060: protein import into nucleus, translocation	1.45E-03
55	GO:0031053: primary miRNA processing	1.45E-03
56	GO:0010029: regulation of seed germination	1.63E-03
57	GO:0009903: chloroplast avoidance movement	1.73E-03
58	GO:0009861: jasmonic acid and ethylene-dependent systemic resistance	1.73E-03
59	GO:0010077: maintenance of inflorescence meristem identity	1.73E-03
60	GO:0009739: response to gibberellin	1.87E-03
61	GO:0009769: photosynthesis, light harvesting in photosystem II	2.04E-03
62	GO:0010044: response to aluminum ion	2.04E-03
63	GO:0010161: red light signaling pathway	2.04E-03
64	GO:0009704: de-etiolation	2.36E-03
65	GO:0032875: regulation of DNA endoreduplication	2.36E-03
66	GO:0009637: response to blue light	2.54E-03
67	GO:0010099: regulation of photomorphogenesis	2.69E-03
68	GO:0009827: plant-type cell wall modification	2.69E-03
69	GO:0035556: intracellular signal transduction	2.98E-03
70	GO:0090333: regulation of stomatal closure	3.04E-03
71	GO:0006970: response to osmotic stress	3.10E-03
72	GO:0009640: photomorphogenesis	3.26E-03
73	GO:0009638: phototropism	3.41E-03
74	GO:0030042: actin filament depolymerization	3.41E-03
75	GO:0048354: mucilage biosynthetic process involved in seed coat development	3.41E-03
76	GO:0080167: response to karrikin	3.71E-03
77	GO:0048441: petal development	3.79E-03
78	GO:0055062: phosphate ion homeostasis	3.79E-03
79	GO:0009641: shade avoidance	3.79E-03
80	GO:0000165: MAPK cascade	3.93E-03
81	GO:0052544: defense response by callose deposition in cell wall	4.18E-03
82	GO:0009682: induced systemic resistance	4.18E-03
83	GO:0006355: regulation of transcription, DNA-templated	4.37E-03
84	GO:0009585: red, far-red light phototransduction	4.38E-03
85	GO:0015979: photosynthesis	4.38E-03
86	GO:0045892: negative regulation of transcription, DNA-templated	4.75E-03
87	GO:0009785: blue light signaling pathway	5.00E-03
88	GO:0050826: response to freezing	5.00E-03
89	GO:0009718: anthocyanin-containing compound biosynthetic process	5.00E-03
90	GO:0009651: response to salt stress	5.20E-03
91	GO:0007015: actin filament organization	5.44E-03
92	GO:0009266: response to temperature stimulus	5.44E-03
93	GO:0048440: carpel development	5.44E-03
94	GO:0019853: L-ascorbic acid biosynthetic process	5.88E-03
95	GO:0090351: seedling development	5.88E-03
96	GO:0009408: response to heat	6.08E-03
97	GO:0016575: histone deacetylation	7.30E-03
98	GO:0048511: rhythmic process	7.79E-03
99	GO:0010431: seed maturation	7.79E-03
100	GO:0061077: chaperone-mediated protein folding	7.79E-03
101	GO:0019748: secondary metabolic process	8.30E-03
102	GO:0006012: galactose metabolic process	8.82E-03
103	GO:0009693: ethylene biosynthetic process	8.82E-03
104	GO:0071215: cellular response to abscisic acid stimulus	8.82E-03
105	GO:0048443: stamen development	9.35E-03
106	GO:0006351: transcription, DNA-templated	9.80E-03
107	GO:0010087: phloem or xylem histogenesis	1.04E-02
108	GO:0006662: glycerol ether metabolic process	1.10E-02
109	GO:0006814: sodium ion transport	1.16E-02
110	GO:0009738: abscisic acid-activated signaling pathway	1.21E-02
111	GO:0010183: pollen tube guidance	1.22E-02
112	GO:0048510: regulation of timing of transition from vegetative to reproductive phase	1.28E-02
113	GO:0008380: RNA splicing	1.29E-02
114	GO:0009617: response to bacterium	1.29E-02
115	GO:1901657: glycosyl compound metabolic process	1.40E-02
116	GO:0019760: glucosinolate metabolic process	1.46E-02
117	GO:0009911: positive regulation of flower development	1.66E-02
118	GO:0016126: sterol biosynthetic process	1.66E-02
119	GO:0055085: transmembrane transport	1.70E-02
120	GO:0006511: ubiquitin-dependent protein catabolic process	1.86E-02
121	GO:0048573: photoperiodism, flowering	1.86E-02
122	GO:0015995: chlorophyll biosynthetic process	1.86E-02
123	GO:0009631: cold acclimation	2.22E-02
124	GO:0010119: regulation of stomatal movement	2.22E-02
125	GO:0044550: secondary metabolite biosynthetic process	2.25E-02
126	GO:0034599: cellular response to oxidative stress	2.45E-02
127	GO:0042542: response to hydrogen peroxide	2.76E-02
128	GO:0008283: cell proliferation	2.84E-02
129	GO:0051707: response to other organism	2.84E-02
130	GO:0042742: defense response to bacterium	3.06E-02
131	GO:0006629: lipid metabolic process	3.06E-02
132	GO:0042538: hyperosmotic salinity response	3.34E-02
133	GO:0006857: oligopeptide transport	3.68E-02
134	GO:0009909: regulation of flower development	3.77E-02
135	GO:0006952: defense response	3.79E-02
136	GO:0016567: protein ubiquitination	4.18E-02
137	GO:0009624: response to nematode	4.51E-02
138	GO:0000398: mRNA splicing, via spliceosome	4.99E-02

Rank	GO Term	Adjusted P value
1	GO:0004567: beta-mannosidase activity	0.00E+00
2	GO:0080082: esculin beta-glucosidase activity	0.00E+00
3	GO:0080081: 4-methylumbelliferyl-beta-D-glucopyranoside beta-glucosidase activity	0.00E+00
4	GO:0047668: amygdalin beta-glucosidase activity	0.00E+00
5	GO:0036033: mediator complex binding	0.00E+00
6	GO:0080083: beta-gentiobiose beta-glucosidase activity	0.00E+00
7	GO:0030504: inorganic diphosphate transmembrane transporter activity	0.00E+00
8	GO:0042907: xanthine transmembrane transporter activity	0.00E+00
9	GO:0010349: L-galactose dehydrogenase activity	0.00E+00
10	GO:0031409: pigment binding	1.45E-05
11	GO:0033857: diphosphoinositol-pentakisphosphate kinase activity	1.30E-04
12	GO:0000829: inositol heptakisphosphate kinase activity	1.30E-04
13	GO:0080079: cellobiose glucosidase activity	1.30E-04
14	GO:0000828: inositol hexakisphosphate kinase activity	1.30E-04
15	GO:0016168: chlorophyll binding	1.38E-04
16	GO:0005274: allantoin uptake transmembrane transporter activity	2.99E-04
17	GO:0047158: sinapoylglucose-sinapoylglucose O-sinapoyltransferase activity	2.99E-04
18	GO:0017150: tRNA dihydrouridine synthase activity	4.92E-04
19	GO:0009882: blue light photoreceptor activity	7.04E-04
20	GO:0000254: C-4 methylsterol oxidase activity	7.04E-04
21	GO:0015210: uracil transmembrane transporter activity	9.34E-04
22	GO:0004197: cysteine-type endopeptidase activity	1.15E-03
23	GO:0016702: oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen	1.18E-03
24	GO:0000156: phosphorelay response regulator activity	1.23E-03
25	GO:0019137: thioglucosidase activity	1.45E-03
26	GO:0102483: scopolin beta-glucosidase activity	1.81E-03
27	GO:0004033: aldo-keto reductase (NADP) activity	2.36E-03
28	GO:0001104: RNA polymerase II transcription cofactor activity	2.69E-03
29	GO:0032041: NAD-dependent histone deacetylase activity (H3-K14 specific)	2.69E-03
30	GO:0008422: beta-glucosidase activity	2.76E-03
31	GO:0005515: protein binding	3.02E-03
32	GO:0000989: transcription factor activity, transcription factor binding	3.04E-03
33	GO:0009815: 1-aminocyclopropane-1-carboxylate oxidase activity	3.04E-03
34	GO:0004672: protein kinase activity	3.89E-03
35	GO:0044183: protein binding involved in protein folding	4.18E-03
36	GO:0047372: acylglycerol lipase activity	4.18E-03
37	GO:0008270: zinc ion binding	4.50E-03
38	GO:0008234: cysteine-type peptidase activity	4.84E-03
39	GO:0004022: alcohol dehydrogenase (NAD) activity	5.00E-03
40	GO:0005315: inorganic phosphate transmembrane transporter activity	5.00E-03
41	GO:0000155: phosphorelay sensor kinase activity	5.00E-03
42	GO:0004565: beta-galactosidase activity	5.00E-03
43	GO:0003712: transcription cofactor activity	5.88E-03
44	GO:0008134: transcription factor binding	6.81E-03
45	GO:0004407: histone deacetylase activity	6.81E-03
46	GO:0019706: protein-cysteine S-palmitoyltransferase activity	7.79E-03
47	GO:0004707: MAP kinase activity	7.79E-03
48	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	8.00E-03
49	GO:0022891: substrate-specific transmembrane transporter activity	8.82E-03
50	GO:0003700: transcription factor activity, sequence-specific DNA binding	9.04E-03
51	GO:0015144: carbohydrate transmembrane transporter activity	9.32E-03
52	GO:0003756: protein disulfide isomerase activity	9.35E-03
53	GO:0008514: organic anion transmembrane transporter activity	9.35E-03
54	GO:0047134: protein-disulfide reductase activity	9.90E-03
55	GO:0005351: sugar:proton symporter activity	1.05E-02
56	GO:0010181: FMN binding	1.16E-02
57	GO:0004791: thioredoxin-disulfide reductase activity	1.16E-02
58	GO:0046872: metal ion binding	1.27E-02
59	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	1.40E-02
60	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	1.79E-02
61	GO:0004497: monooxygenase activity	2.07E-02
62	GO:0016709: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen	2.68E-02
63	GO:0004185: serine-type carboxypeptidase activity	2.84E-02
64	GO:0003677: DNA binding	2.90E-02
65	GO:0005506: iron ion binding	3.00E-02
66	GO:0015293: symporter activity	3.08E-02
67	GO:0004674: protein serine/threonine kinase activity	3.12E-02
68	GO:0005215: transporter activity	3.47E-02
69	GO:0045735: nutrient reservoir activity	3.95E-02
70	GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups	4.04E-02
71	GO:0016874: ligase activity	4.32E-02
72	GO:0022857: transmembrane transporter activity	4.32E-02
73	GO:0046983: protein dimerization activity	4.37E-02
74	GO:0003779: actin binding	4.41E-02
75	GO:0004842: ubiquitin-protein transferase activity	4.56E-02
76	GO:0015035: protein disulfide oxidoreductase activity	4.60E-02
77	GO:0016301: kinase activity	4.76E-02

Rank	GO Term	Adjusted P value
1	GO:0030076: light-harvesting complex	1.20E-05
2	GO:0009898: cytoplasmic side of plasma membrane	1.40E-05
3	GO:0009522: photosystem I	5.95E-05
4	GO:0010287: plastoglobule	1.20E-04
5	GO:0005764: lysosome	3.27E-04
6	GO:0000323: lytic vacuole	7.04E-04
7	GO:0009534: chloroplast thylakoid	8.07E-04
8	GO:0010445: nuclear dicing body	9.34E-04
9	GO:0009517: PSII associated light-harvesting complex II	9.34E-04
10	GO:0009523: photosystem II	1.02E-03
11	GO:0070847: core mediator complex	1.45E-03
12	GO:0005851: eukaryotic translation initiation factor 2B complex	1.45E-03
13	GO:0009986: cell surface	2.04E-03
14	GO:0005680: anaphase-promoting complex	3.04E-03
15	GO:0009941: chloroplast envelope	3.32E-03
16	GO:0016604: nuclear body	3.41E-03
17	GO:0009579: thylakoid	3.60E-03
18	GO:0016021: integral component of membrane	4.61E-03
19	GO:0005681: spliceosomal complex	5.17E-03
20	GO:0016607: nuclear speck	5.34E-03
21	GO:0005622: intracellular	6.56E-03
22	GO:0005634: nucleus	7.02E-03
23	GO:0005623: cell	8.00E-03
24	GO:0015629: actin cytoskeleton	8.82E-03
25	GO:0005615: extracellular space	1.20E-02
26	GO:0016592: mediator complex	1.34E-02
27	GO:0031969: chloroplast membrane	2.07E-02
28	GO:0009535: chloroplast thylakoid membrane	2.68E-02
29	GO:0016020: membrane	3.51E-02
30	GO:0005773: vacuole	3.53E-02