co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT2G04790

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0005996: monosaccharide metabolic process	0.00E+00
2	GO:0080114: positive regulation of glycine hydroxymethyltransferase activity	0.00E+00
3	GO:0006810: transport	2.60E-05
4	GO:0042335: cuticle development	3.59E-05
5	GO:0009416: response to light stimulus	6.45E-05
6	GO:0006723: cuticle hydrocarbon biosynthetic process	1.14E-04
7	GO:0006633: fatty acid biosynthetic process	1.45E-04
8	GO:0018298: protein-chromophore linkage	1.46E-04
9	GO:0009773: photosynthetic electron transport in photosystem I	1.82E-04
10	GO:0000038: very long-chain fatty acid metabolic process	1.82E-04
11	GO:0006094: gluconeogenesis	2.41E-04
12	GO:0097054: L-glutamate biosynthetic process	2.65E-04
13	GO:0030388: fructose 1,6-bisphosphate metabolic process	2.65E-04
14	GO:0010025: wax biosynthetic process	3.44E-04
15	GO:0006833: water transport	3.44E-04
16	GO:0009768: photosynthesis, light harvesting in photosystem I	4.22E-04
17	GO:0033591: response to L-ascorbic acid	4.38E-04
18	GO:0006000: fructose metabolic process	4.38E-04
19	GO:0043447: alkane biosynthetic process	4.38E-04
20	GO:0015979: photosynthesis	6.00E-04
21	GO:0006241: CTP biosynthetic process	6.29E-04
22	GO:0006165: nucleoside diphosphate phosphorylation	6.29E-04
23	GO:0006228: UTP biosynthetic process	6.29E-04
24	GO:0006537: glutamate biosynthetic process	6.29E-04
25	GO:0006168: adenine salvage	6.29E-04
26	GO:0006166: purine ribonucleoside salvage	6.29E-04
27	GO:0042631: cellular response to water deprivation	6.98E-04
28	GO:0034220: ion transmembrane transport	6.98E-04
29	GO:0006183: GTP biosynthetic process	8.35E-04
30	GO:0045727: positive regulation of translation	8.35E-04
31	GO:2000122: negative regulation of stomatal complex development	8.35E-04
32	GO:0031122: cytoplasmic microtubule organization	8.35E-04
33	GO:2000038: regulation of stomatal complex development	8.35E-04
34	GO:0010037: response to carbon dioxide	8.35E-04
35	GO:0019676: ammonia assimilation cycle	8.35E-04
36	GO:0015976: carbon utilization	8.35E-04
37	GO:0032876: negative regulation of DNA endoreduplication	1.05E-03
38	GO:0030308: negative regulation of cell growth	1.05E-03
39	GO:0044209: AMP salvage	1.05E-03
40	GO:0016554: cytidine to uridine editing	1.29E-03
41	GO:0045962: positive regulation of development, heterochronic	1.29E-03
42	GO:0000741: karyogamy	1.29E-03
43	GO:0010190: cytochrome b6f complex assembly	1.29E-03
44	GO:0006596: polyamine biosynthetic process	1.29E-03
45	GO:0048759: xylem vessel member cell differentiation	1.29E-03
46	GO:0007623: circadian rhythm	1.30E-03
47	GO:0042372: phylloquinone biosynthetic process	1.54E-03
48	GO:0045926: negative regulation of growth	1.54E-03
49	GO:2000037: regulation of stomatal complex patterning	1.54E-03
50	GO:0030497: fatty acid elongation	1.81E-03
51	GO:0009645: response to low light intensity stimulus	1.81E-03
52	GO:0008610: lipid biosynthetic process	2.09E-03
53	GO:0009850: auxin metabolic process	2.09E-03
54	GO:0016051: carbohydrate biosynthetic process	2.13E-03
55	GO:0009657: plastid organization	2.39E-03
56	GO:0032544: plastid translation	2.39E-03
57	GO:0009932: cell tip growth	2.39E-03
58	GO:0006002: fructose 6-phosphate metabolic process	2.39E-03
59	GO:0009409: response to cold	2.47E-03
60	GO:0006098: pentose-phosphate shunt	2.70E-03
61	GO:0009644: response to high light intensity	2.96E-03
62	GO:1900865: chloroplast RNA modification	3.02E-03
63	GO:0019538: protein metabolic process	3.36E-03
64	GO:0009870: defense response signaling pathway, resistance gene-dependent	3.36E-03
65	GO:0006535: cysteine biosynthetic process from serine	3.36E-03
66	GO:0043069: negative regulation of programmed cell death	3.36E-03
67	GO:0006415: translational termination	3.71E-03
68	GO:0019684: photosynthesis, light reaction	3.71E-03
69	GO:0009089: lysine biosynthetic process via diaminopimelate	3.71E-03
70	GO:1903507: negative regulation of nucleic acid-templated transcription	3.71E-03
71	GO:0000272: polysaccharide catabolic process	3.71E-03
72	GO:0018119: peptidyl-cysteine S-nitrosylation	3.71E-03
73	GO:0008361: regulation of cell size	4.06E-03
74	GO:0005986: sucrose biosynthetic process	4.43E-03
75	GO:0019253: reductive pentose-phosphate cycle	4.81E-03
76	GO:0006636: unsaturated fatty acid biosynthetic process	5.61E-03
77	GO:0005992: trehalose biosynthetic process	6.03E-03
78	GO:0006487: protein N-linked glycosylation	6.03E-03
79	GO:0019344: cysteine biosynthetic process	6.03E-03
80	GO:0061077: chaperone-mediated protein folding	6.89E-03
81	GO:2000022: regulation of jasmonic acid mediated signaling pathway	7.34E-03
82	GO:0019748: secondary metabolic process	7.34E-03
83	GO:0006284: base-excision repair	8.26E-03
84	GO:0019722: calcium-mediated signaling	8.26E-03
85	GO:0000271: polysaccharide biosynthetic process	9.23E-03
86	GO:0010087: phloem or xylem histogenesis	9.23E-03
87	GO:0045489: pectin biosynthetic process	9.73E-03
88	GO:0010197: polar nucleus fusion	9.73E-03
89	GO:0009741: response to brassinosteroid	9.73E-03
90	GO:0019252: starch biosynthetic process	1.08E-02
91	GO:0071554: cell wall organization or biogenesis	1.13E-02
92	GO:0005975: carbohydrate metabolic process	1.15E-02
93	GO:0010583: response to cyclopentenone	1.18E-02
94	GO:0048235: pollen sperm cell differentiation	1.18E-02
95	GO:0010090: trichome morphogenesis	1.24E-02
96	GO:1901657: glycosyl compound metabolic process	1.24E-02
97	GO:0007267: cell-cell signaling	1.35E-02
98	GO:0055085: transmembrane transport	1.36E-02
99	GO:0009658: chloroplast organization	1.40E-02
100	GO:0016126: sterol biosynthetic process	1.46E-02
101	GO:0001666: response to hypoxia	1.46E-02
102	GO:0010411: xyloglucan metabolic process	1.64E-02
103	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	1.79E-02
104	GO:0000160: phosphorelay signal transduction system	1.83E-02
105	GO:0010218: response to far red light	1.89E-02
106	GO:0010119: regulation of stomatal movement	1.96E-02
107	GO:0009853: photorespiration	2.09E-02
108	GO:0009867: jasmonic acid mediated signaling pathway	2.09E-02
109	GO:0009637: response to blue light	2.09E-02
110	GO:0006631: fatty acid metabolic process	2.36E-02
111	GO:0009414: response to water deprivation	2.38E-02
112	GO:0055114: oxidation-reduction process	2.42E-02
113	GO:0071555: cell wall organization	2.45E-02
114	GO:0010114: response to red light	2.50E-02
115	GO:0009926: auxin polar transport	2.50E-02
116	GO:0009744: response to sucrose	2.50E-02
117	GO:0042546: cell wall biogenesis	2.57E-02
118	GO:0008643: carbohydrate transport	2.65E-02
119	GO:0009965: leaf morphogenesis	2.72E-02
120	GO:0030154: cell differentiation	2.73E-02
121	GO:0031347: regulation of defense response	2.87E-02
122	GO:0006364: rRNA processing	3.09E-02
123	GO:0009736: cytokinin-activated signaling pathway	3.09E-02
124	GO:0051603: proteolysis involved in cellular protein catabolic process	3.17E-02
125	GO:0006857: oligopeptide transport	3.25E-02
126	GO:0006096: glycolytic process	3.49E-02
127	GO:0006396: RNA processing	4.06E-02
128	GO:0009742: brassinosteroid mediated signaling pathway	4.14E-02
129	GO:0009611: response to wounding	4.63E-02

Rank	GO Term	Adjusted P value
1	GO:0010487: thermospermine synthase activity	0.00E+00
2	GO:0050613: delta14-sterol reductase activity	0.00E+00
3	GO:0050278: sedoheptulose-bisphosphatase activity	0.00E+00
4	GO:0008756: o-succinylbenzoate-CoA ligase activity	0.00E+00
5	GO:0016168: chlorophyll binding	1.07E-04
6	GO:0080132: fatty acid alpha-hydroxylase activity	1.14E-04
7	GO:0052638: indole-3-butyrate beta-glucosyltransferase activity	1.14E-04
8	GO:0008568: microtubule-severing ATPase activity	1.14E-04
9	GO:0016768: spermine synthase activity	1.14E-04
10	GO:0016041: glutamate synthase (ferredoxin) activity	1.14E-04
11	GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity	2.65E-04
12	GO:0008967: phosphoglycolate phosphatase activity	2.65E-04
13	GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase	2.65E-04
14	GO:0050017: L-3-cyanoalanine synthase activity	2.65E-04
15	GO:0042389: omega-3 fatty acid desaturase activity	2.65E-04
16	GO:0010297: heteropolysaccharide binding	2.65E-04
17	GO:0102336: 3-oxo-arachidoyl-CoA synthase activity	3.44E-04
18	GO:0102337: 3-oxo-cerotoyl-CoA synthase activity	3.44E-04
19	GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity	3.44E-04
20	GO:0031409: pigment binding	3.44E-04
21	GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor	6.29E-04
22	GO:0003999: adenine phosphoribosyltransferase activity	6.29E-04
23	GO:0016149: translation release factor activity, codon specific	6.29E-04
24	GO:0003830: beta-1,4-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity	6.29E-04
25	GO:0004550: nucleoside diphosphate kinase activity	6.29E-04
26	GO:0004045: aminoacyl-tRNA hydrolase activity	8.35E-04
27	GO:0009922: fatty acid elongase activity	1.05E-03
28	GO:0051538: 3 iron, 4 sulfur cluster binding	1.05E-03
29	GO:0008725: DNA-3-methyladenine glycosylase activity	1.05E-03
30	GO:0042578: phosphoric ester hydrolase activity	1.29E-03
31	GO:0016208: AMP binding	1.29E-03
32	GO:0004332: fructose-bisphosphate aldolase activity	1.29E-03
33	GO:0015250: water channel activity	1.30E-03
34	GO:0004124: cysteine synthase activity	1.54E-03
35	GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water	2.39E-03
36	GO:0003747: translation release factor activity	2.70E-03
37	GO:0004185: serine-type carboxypeptidase activity	2.74E-03
38	GO:0004805: trehalose-phosphatase activity	3.36E-03
39	GO:0015386: potassium:proton antiporter activity	3.71E-03
40	GO:0004089: carbonate dehydratase activity	4.43E-03
41	GO:0005528: FK506 binding	6.03E-03
42	GO:0003714: transcription corepressor activity	6.03E-03
43	GO:0016758: transferase activity, transferring hexosyl groups	6.35E-03
44	GO:0043424: protein histidine kinase binding	6.45E-03
45	GO:0015079: potassium ion transmembrane transporter activity	6.45E-03
46	GO:0019843: rRNA binding	6.52E-03
47	GO:0003824: catalytic activity	7.03E-03
48	GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity	7.34E-03
49	GO:0022891: substrate-specific transmembrane transporter activity	7.79E-03
50	GO:0008514: organic anion transmembrane transporter activity	8.26E-03
51	GO:0001085: RNA polymerase II transcription factor binding	9.73E-03
52	GO:0050662: coenzyme binding	1.02E-02
53	GO:0016762: xyloglucan:xyloglucosyl transferase activity	1.13E-02
54	GO:0042802: identical protein binding	1.15E-02
55	GO:0000156: phosphorelay response regulator activity	1.24E-02
56	GO:0016722: oxidoreductase activity, oxidizing metal ions	1.35E-02
57	GO:0016413: O-acetyltransferase activity	1.40E-02
58	GO:0008375: acetylglucosaminyltransferase activity	1.58E-02
59	GO:0102483: scopolin beta-glucosidase activity	1.64E-02
60	GO:0016798: hydrolase activity, acting on glycosyl bonds	1.64E-02
61	GO:0016787: hydrolase activity	1.93E-02
62	GO:0001228: transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding	1.96E-02
63	GO:0004871: signal transducer activity	2.18E-02
64	GO:0008422: beta-glucosidase activity	2.22E-02
65	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	2.79E-02
66	GO:0016491: oxidoreductase activity	3.45E-02
67	GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups	3.57E-02
68	GO:0080044: quercetin 7-O-glucosyltransferase activity	3.73E-02
69	GO:0004650: polygalacturonase activity	3.73E-02
70	GO:0080043: quercetin 3-O-glucosyltransferase activity	3.73E-02
71	GO:0022857: transmembrane transporter activity	3.81E-02
72	GO:0016887: ATPase activity	3.96E-02
73	GO:0016746: transferase activity, transferring acyl groups	4.06E-02

Rank	GO Term	Adjusted P value
1	GO:0009535: chloroplast thylakoid membrane	2.18E-07
2	GO:0009507: chloroplast	4.20E-07
3	GO:0009941: chloroplast envelope	7.36E-06
4	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	1.08E-04
5	GO:0009782: photosystem I antenna complex	1.14E-04
6	GO:0042170: plastid membrane	2.65E-04
7	GO:0000427: plastid-encoded plastid RNA polymerase complex	2.65E-04
8	GO:0030076: light-harvesting complex	3.08E-04
9	GO:0009570: chloroplast stroma	4.91E-04
10	GO:0010287: plastoglobule	8.20E-04
11	GO:0009543: chloroplast thylakoid lumen	8.76E-04
12	GO:0048046: apoplast	1.28E-03
13	GO:0016021: integral component of membrane	2.96E-03
14	GO:0031969: chloroplast membrane	2.96E-03
15	GO:0030095: chloroplast photosystem II	4.81E-03
16	GO:0000312: plastid small ribosomal subunit	4.81E-03
17	GO:0009706: chloroplast inner membrane	5.21E-03
18	GO:0030176: integral component of endoplasmic reticulum membrane	5.21E-03
19	GO:0005758: mitochondrial intermembrane space	6.03E-03
20	GO:0009654: photosystem II oxygen evolving complex	6.45E-03
21	GO:0005576: extracellular region	8.54E-03
22	GO:0009505: plant-type cell wall	8.60E-03
23	GO:0009522: photosystem I	1.02E-02
24	GO:0016020: membrane	1.02E-02
25	GO:0009523: photosystem II	1.08E-02
26	GO:0019898: extrinsic component of membrane	1.08E-02
27	GO:0005789: endoplasmic reticulum membrane	1.16E-02
28	GO:0009579: thylakoid	1.26E-02
29	GO:0005778: peroxisomal membrane	1.35E-02
30	GO:0010319: stromule	1.35E-02
31	GO:0030529: intracellular ribonucleoprotein complex	1.46E-02
32	GO:0005667: transcription factor complex	1.58E-02
33	GO:0009506: plasmodesma	2.05E-02
34	GO:0005887: integral component of plasma membrane	3.48E-02