Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT2G04780

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0010430: fatty acid omega-oxidation0.00E+00
2GO:0007638: mechanosensory behavior0.00E+00
3GO:0090393: sepal giant cell development0.00E+00
4GO:0015739: sialic acid transport0.00E+00
5GO:0071555: cell wall organization4.32E-06
6GO:0042546: cell wall biogenesis2.29E-05
7GO:0010583: response to cyclopentenone3.30E-05
8GO:0045490: pectin catabolic process3.70E-05
9GO:0007267: cell-cell signaling4.78E-05
10GO:2000122: negative regulation of stomatal complex development6.01E-05
11GO:0006546: glycine catabolic process6.01E-05
12GO:0010037: response to carbon dioxide6.01E-05
13GO:0015976: carbon utilization6.01E-05
14GO:0010411: xyloglucan metabolic process8.16E-05
15GO:0046520: sphingoid biosynthetic process3.04E-04
16GO:0010442: guard cell morphogenesis3.04E-04
17GO:0071370: cellular response to gibberellin stimulus3.04E-04
18GO:1901599: (-)-pinoresinol biosynthetic process3.04E-04
19GO:0010729: positive regulation of hydrogen peroxide biosynthetic process3.04E-04
20GO:0019510: S-adenosylhomocysteine catabolic process3.04E-04
21GO:0007155: cell adhesion3.09E-04
22GO:0010069: zygote asymmetric cytokinesis in embryo sac6.66E-04
23GO:0033353: S-adenosylmethionine cycle6.66E-04
24GO:0015786: UDP-glucose transport6.66E-04
25GO:0060919: auxin influx6.66E-04
26GO:0030388: fructose 1,6-bisphosphate metabolic process6.66E-04
27GO:2000123: positive regulation of stomatal complex development6.66E-04
28GO:0010424: DNA methylation on cytosine within a CG sequence6.66E-04
29GO:0052541: plant-type cell wall cellulose metabolic process6.66E-04
30GO:0009773: photosynthetic electron transport in photosystem I7.28E-04
31GO:0006000: fructose metabolic process1.08E-03
32GO:0015840: urea transport1.08E-03
33GO:0006065: UDP-glucuronate biosynthetic process1.08E-03
34GO:0015783: GDP-fucose transport1.08E-03
35GO:0090506: axillary shoot meristem initiation1.08E-03
36GO:0006071: glycerol metabolic process1.31E-03
37GO:0006833: water transport1.31E-03
38GO:0006869: lipid transport1.46E-03
39GO:0006631: fatty acid metabolic process1.49E-03
40GO:0006241: CTP biosynthetic process1.55E-03
41GO:0072334: UDP-galactose transmembrane transport1.55E-03
42GO:0080170: hydrogen peroxide transmembrane transport1.55E-03
43GO:0006165: nucleoside diphosphate phosphorylation1.55E-03
44GO:0006228: UTP biosynthetic process1.55E-03
45GO:0043572: plastid fission1.55E-03
46GO:0032877: positive regulation of DNA endoreduplication1.55E-03
47GO:0007231: osmosensory signaling pathway1.55E-03
48GO:0042742: defense response to bacterium1.67E-03
49GO:0030245: cellulose catabolic process1.92E-03
50GO:0006183: GTP biosynthetic process2.07E-03
51GO:0033500: carbohydrate homeostasis2.07E-03
52GO:0000919: cell plate assembly2.07E-03
53GO:2000038: regulation of stomatal complex development2.07E-03
54GO:0009956: radial pattern formation2.07E-03
55GO:0019464: glycine decarboxylation via glycine cleavage system2.07E-03
56GO:0009765: photosynthesis, light harvesting2.07E-03
57GO:0006085: acetyl-CoA biosynthetic process2.07E-03
58GO:0009294: DNA mediated transformation2.10E-03
59GO:0055085: transmembrane transport2.15E-03
60GO:0019722: calcium-mediated signaling2.28E-03
61GO:0010375: stomatal complex patterning2.65E-03
62GO:0046785: microtubule polymerization2.65E-03
63GO:0016120: carotene biosynthetic process2.65E-03
64GO:0006656: phosphatidylcholine biosynthetic process2.65E-03
65GO:0016123: xanthophyll biosynthetic process2.65E-03
66GO:0000271: polysaccharide biosynthetic process2.67E-03
67GO:0034220: ion transmembrane transport2.67E-03
68GO:0010190: cytochrome b6f complex assembly3.27E-03
69GO:0018258: protein O-linked glycosylation via hydroxyproline3.27E-03
70GO:0010405: arabinogalactan protein metabolic process3.27E-03
71GO:0071554: cell wall organization or biogenesis3.55E-03
72GO:0042545: cell wall modification3.65E-03
73GO:0030643: cellular phosphate ion homeostasis3.93E-03
74GO:0010067: procambium histogenesis3.93E-03
75GO:1901259: chloroplast rRNA processing3.93E-03
76GO:0006694: steroid biosynthetic process3.93E-03
77GO:0010555: response to mannitol3.93E-03
78GO:0009955: adaxial/abaxial pattern specification3.93E-03
79GO:0010090: trichome morphogenesis4.04E-03
80GO:0005975: carbohydrate metabolic process4.17E-03
81GO:0071669: plant-type cell wall organization or biogenesis4.64E-03
82GO:0050790: regulation of catalytic activity4.64E-03
83GO:0045454: cell redox homeostasis5.34E-03
84GO:0009642: response to light intensity5.39E-03
85GO:0006875: cellular metal ion homeostasis5.39E-03
86GO:0006526: arginine biosynthetic process6.18E-03
87GO:0032544: plastid translation6.18E-03
88GO:0009808: lignin metabolic process6.18E-03
89GO:0006002: fructose 6-phosphate metabolic process6.18E-03
90GO:0006633: fatty acid biosynthetic process6.75E-03
91GO:0010206: photosystem II repair7.01E-03
92GO:0048589: developmental growth7.01E-03
93GO:0015780: nucleotide-sugar transport7.01E-03
94GO:0010311: lateral root formation7.03E-03
95GO:0010119: regulation of stomatal movement7.74E-03
96GO:0006349: regulation of gene expression by genetic imprinting7.87E-03
97GO:0016051: carbohydrate biosynthetic process8.49E-03
98GO:0009870: defense response signaling pathway, resistance gene-dependent8.77E-03
99GO:0043069: negative regulation of programmed cell death8.77E-03
100GO:0048829: root cap development8.77E-03
101GO:0006816: calcium ion transport9.71E-03
102GO:0009807: lignan biosynthetic process9.71E-03
103GO:0018119: peptidyl-cysteine S-nitrosylation9.71E-03
104GO:0010216: maintenance of DNA methylation9.71E-03
105GO:0010015: root morphogenesis9.71E-03
106GO:0009409: response to cold9.76E-03
107GO:0045037: protein import into chloroplast stroma1.07E-02
108GO:0051707: response to other organism1.10E-02
109GO:0006810: transport1.14E-02
110GO:0050826: response to freezing1.17E-02
111GO:0009725: response to hormone1.17E-02
112GO:0006094: gluconeogenesis1.17E-02
113GO:0005986: sucrose biosynthetic process1.17E-02
114GO:0008643: carbohydrate transport1.19E-02
115GO:0010143: cutin biosynthetic process1.27E-02
116GO:0010020: chloroplast fission1.27E-02
117GO:0009933: meristem structural organization1.27E-02
118GO:0019253: reductive pentose-phosphate cycle1.27E-02
119GO:0010223: secondary shoot formation1.27E-02
120GO:0048768: root hair cell tip growth1.27E-02
121GO:0042254: ribosome biogenesis1.36E-02
122GO:0005985: sucrose metabolic process1.38E-02
123GO:0070588: calcium ion transmembrane transport1.38E-02
124GO:0010025: wax biosynthetic process1.49E-02
125GO:0006636: unsaturated fatty acid biosynthetic process1.49E-02
126GO:0009833: plant-type primary cell wall biogenesis1.49E-02
127GO:0009735: response to cytokinin1.53E-02
128GO:0007010: cytoskeleton organization1.60E-02
129GO:0019344: cysteine biosynthetic process1.60E-02
130GO:0010026: trichome differentiation1.72E-02
131GO:0007017: microtubule-based process1.72E-02
132GO:0048367: shoot system development1.81E-02
133GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway1.82E-02
134GO:0048278: vesicle docking1.84E-02
135GO:0003333: amino acid transmembrane transport1.84E-02
136GO:0016998: cell wall macromolecule catabolic process1.84E-02
137GO:0061077: chaperone-mediated protein folding1.84E-02
138GO:0006730: one-carbon metabolic process1.96E-02
139GO:0080092: regulation of pollen tube growth1.96E-02
140GO:0019748: secondary metabolic process1.96E-02
141GO:0015979: photosynthesis2.06E-02
142GO:0001944: vasculature development2.09E-02
143GO:0006284: base-excision repair2.22E-02
144GO:0010089: xylem development2.22E-02
145GO:0016117: carotenoid biosynthetic process2.35E-02
146GO:0042335: cuticle development2.48E-02
147GO:0080022: primary root development2.48E-02
148GO:0000413: protein peptidyl-prolyl isomerization2.48E-02
149GO:0010087: phloem or xylem histogenesis2.48E-02
150GO:0045489: pectin biosynthetic process2.62E-02
151GO:0006520: cellular amino acid metabolic process2.62E-02
152GO:0010305: leaf vascular tissue pattern formation2.62E-02
153GO:0016042: lipid catabolic process2.75E-02
154GO:0061025: membrane fusion2.76E-02
155GO:0006629: lipid metabolic process2.85E-02
156GO:0019252: starch biosynthetic process2.90E-02
157GO:0002229: defense response to oomycetes3.04E-02
158GO:0016132: brassinosteroid biosynthetic process3.04E-02
159GO:0007264: small GTPase mediated signal transduction3.19E-02
160GO:1901657: glycosyl compound metabolic process3.33E-02
161GO:0016126: sterol biosynthetic process3.95E-02
162GO:0009788: negative regulation of abscisic acid-activated signaling pathway4.11E-02
163GO:0006906: vesicle fusion4.27E-02
164GO:0009617: response to bacterium4.35E-02
165GO:0006508: proteolysis4.54E-02
166GO:0009817: defense response to fungus, incompatible interaction4.77E-02
167GO:0030244: cellulose biosynthetic process4.77E-02
168GO:0009832: plant-type cell wall biogenesis4.94E-02
169GO:0048767: root hair elongation4.94E-02
170GO:0000160: phosphorelay signal transduction system4.94E-02
171GO:0009813: flavonoid biosynthetic process4.94E-02
RankGO TermAdjusted P value
1GO:0052667: phosphomethylethanolamine N-methyltransferase activity0.00E+00
2GO:0045435: lycopene epsilon cyclase activity0.00E+00
3GO:0050613: delta14-sterol reductase activity0.00E+00
4GO:0015136: sialic acid transmembrane transporter activity0.00E+00
5GO:0050278: sedoheptulose-bisphosphatase activity0.00E+00
6GO:0050614: delta24-sterol reductase activity0.00E+00
7GO:0005456: CMP-N-acetylneuraminate transmembrane transporter activity0.00E+00
8GO:0051920: peroxiredoxin activity2.47E-08
9GO:0016209: antioxidant activity8.79E-08
10GO:0016762: xyloglucan:xyloglucosyl transferase activity2.89E-05
11GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds3.13E-05
12GO:0016798: hydrolase activity, acting on glycosyl bonds8.16E-05
13GO:0019843: rRNA binding1.48E-04
14GO:0051753: mannan synthase activity1.88E-04
15GO:0030570: pectate lyase activity1.95E-04
16GO:0080132: fatty acid alpha-hydroxylase activity3.04E-04
17GO:0015088: copper uptake transmembrane transporter activity3.04E-04
18GO:0031957: very long-chain fatty acid-CoA ligase activity3.04E-04
19GO:0042349: guiding stereospecific synthesis activity3.04E-04
20GO:0003942: N-acetyl-gamma-glutamyl-phosphate reductase activity3.04E-04
21GO:0000170: sphingosine hydroxylase activity3.04E-04
22GO:0047259: glucomannan 4-beta-mannosyltransferase activity3.04E-04
23GO:0004560: alpha-L-fucosidase activity3.04E-04
24GO:0004013: adenosylhomocysteinase activity3.04E-04
25GO:0008889: glycerophosphodiester phosphodiesterase activity4.57E-04
26GO:0030599: pectinesterase activity6.01E-04
27GO:0042284: sphingolipid delta-4 desaturase activity6.66E-04
28GO:0046593: mandelonitrile lyase activity6.66E-04
29GO:0000234: phosphoethanolamine N-methyltransferase activity6.66E-04
30GO:0008967: phosphoglycolate phosphatase activity6.66E-04
31GO:0042389: omega-3 fatty acid desaturase activity6.66E-04
32GO:0004047: aminomethyltransferase activity6.66E-04
33GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity6.66E-04
34GO:0004089: carbonate dehydratase activity9.40E-04
35GO:0005504: fatty acid binding1.08E-03
36GO:0005457: GDP-fucose transmembrane transporter activity1.08E-03
37GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor1.08E-03
38GO:0003979: UDP-glucose 6-dehydrogenase activity1.08E-03
39GO:0004857: enzyme inhibitor activity1.45E-03
40GO:0005460: UDP-glucose transmembrane transporter activity1.55E-03
41GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor1.55E-03
42GO:0004550: nucleoside diphosphate kinase activity1.55E-03
43GO:0003878: ATP citrate synthase activity1.55E-03
44GO:0004375: glycine dehydrogenase (decarboxylating) activity1.55E-03
45GO:0010328: auxin influx transmembrane transporter activity2.07E-03
46GO:0045430: chalcone isomerase activity2.07E-03
47GO:0046527: glucosyltransferase activity2.07E-03
48GO:0015204: urea transmembrane transporter activity2.07E-03
49GO:0008810: cellulase activity2.10E-03
50GO:0051287: NAD binding2.11E-03
51GO:0005459: UDP-galactose transmembrane transporter activity2.65E-03
52GO:0008725: DNA-3-methyladenine glycosylase activity2.65E-03
53GO:0045330: aspartyl esterase activity2.76E-03
54GO:0004601: peroxidase activity2.92E-03
55GO:0008289: lipid binding3.22E-03
56GO:0042578: phosphoric ester hydrolase activity3.27E-03
57GO:0008200: ion channel inhibitor activity3.27E-03
58GO:1990714: hydroxyproline O-galactosyltransferase activity3.27E-03
59GO:0016832: aldehyde-lyase activity3.93E-03
60GO:0102391: decanoate--CoA ligase activity3.93E-03
61GO:0003886: DNA (cytosine-5-)-methyltransferase activity3.93E-03
62GO:0005200: structural constituent of cytoskeleton4.56E-03
63GO:0004467: long-chain fatty acid-CoA ligase activity4.64E-03
64GO:0005338: nucleotide-sugar transmembrane transporter activity4.64E-03
65GO:0016413: O-acetyltransferase activity4.84E-03
66GO:0015250: water channel activity5.13E-03
67GO:0005544: calcium-dependent phospholipid binding5.39E-03
68GO:0004564: beta-fructofuranosidase activity5.39E-03
69GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water6.18E-03
70GO:0003735: structural constituent of ribosome7.47E-03
71GO:0016614: oxidoreductase activity, acting on CH-OH group of donors7.74E-03
72GO:0004575: sucrose alpha-glucosidase activity7.87E-03
73GO:0005381: iron ion transmembrane transporter activity7.87E-03
74GO:0004860: protein kinase inhibitor activity9.71E-03
75GO:0005089: Rho guanyl-nucleotide exchange factor activity9.71E-03
76GO:0004185: serine-type carboxypeptidase activity1.10E-02
77GO:0004565: beta-galactosidase activity1.17E-02
78GO:0005262: calcium channel activity1.17E-02
79GO:0003755: peptidyl-prolyl cis-trans isomerase activity1.28E-02
80GO:0005528: FK506 binding1.60E-02
81GO:0045735: nutrient reservoir activity1.75E-02
82GO:0004176: ATP-dependent peptidase activity1.84E-02
83GO:0033612: receptor serine/threonine kinase binding1.84E-02
84GO:0004650: polygalacturonase activity1.93E-02
85GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity1.96E-02
86GO:0003824: catalytic activity1.97E-02
87GO:0052689: carboxylic ester hydrolase activity1.98E-02
88GO:0022857: transmembrane transporter activity1.99E-02
89GO:0016760: cellulose synthase (UDP-forming) activity2.09E-02
90GO:0008514: organic anion transmembrane transporter activity2.22E-02
91GO:0005102: receptor binding2.35E-02
92GO:0016758: transferase activity, transferring hexosyl groups2.58E-02
93GO:0016829: lyase activity2.86E-02
94GO:0019901: protein kinase binding2.90E-02
95GO:0004872: receptor activity2.90E-02
96GO:0005516: calmodulin binding3.20E-02
97GO:0000156: phosphorelay response regulator activity3.33E-02
98GO:0016759: cellulose synthase activity3.49E-02
99GO:0008483: transaminase activity3.64E-02
100GO:0016722: oxidoreductase activity, oxidizing metal ions3.64E-02
101GO:0008237: metallopeptidase activity3.64E-02
102GO:0102483: scopolin beta-glucosidase activity4.44E-02
103GO:0030247: polysaccharide binding4.44E-02
104GO:0008236: serine-type peptidase activity4.60E-02
RankGO TermAdjusted P value
1GO:0048046: apoplast5.19E-17
2GO:0005576: extracellular region4.99E-12
3GO:0031225: anchored component of membrane1.04E-11
4GO:0009505: plant-type cell wall3.08E-08
5GO:0009579: thylakoid3.45E-07
6GO:0009941: chloroplast envelope5.11E-07
7GO:0046658: anchored component of plasma membrane6.54E-07
8GO:0009507: chloroplast1.05E-06
9GO:0009543: chloroplast thylakoid lumen1.09E-06
10GO:0009570: chloroplast stroma4.47E-06
11GO:0031977: thylakoid lumen1.71E-05
12GO:0005618: cell wall2.18E-05
13GO:0009535: chloroplast thylakoid membrane2.94E-05
14GO:0005886: plasma membrane1.42E-04
15GO:0000139: Golgi membrane3.22E-04
16GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)4.57E-04
17GO:0009534: chloroplast thylakoid5.38E-04
18GO:0010319: stromule5.53E-04
19GO:0042170: plastid membrane6.66E-04
20GO:0005853: eukaryotic translation elongation factor 1 complex1.08E-03
21GO:0005960: glycine cleavage complex1.55E-03
22GO:0009346: citrate lyase complex1.55E-03
23GO:0005775: vacuolar lumen1.55E-03
24GO:0009654: photosystem II oxygen evolving complex1.60E-03
25GO:0031897: Tic complex2.07E-03
26GO:0010168: ER body3.27E-03
27GO:0009706: chloroplast inner membrane3.79E-03
28GO:0005773: vacuole4.54E-03
29GO:0042807: central vacuole4.64E-03
30GO:0009986: cell surface4.64E-03
31GO:0009533: chloroplast stromal thylakoid4.64E-03
32GO:0009506: plasmodesma5.53E-03
33GO:0005840: ribosome5.93E-03
34GO:0009539: photosystem II reaction center6.18E-03
35GO:0000326: protein storage vacuole6.18E-03
36GO:0045298: tubulin complex7.01E-03
37GO:0005763: mitochondrial small ribosomal subunit7.01E-03
38GO:0000325: plant-type vacuole7.74E-03
39GO:0015934: large ribosomal subunit7.74E-03
40GO:0016324: apical plasma membrane8.77E-03
41GO:0055028: cortical microtubule8.77E-03
42GO:0000311: plastid large ribosomal subunit1.07E-02
43GO:0030095: chloroplast photosystem II1.27E-02
44GO:0030176: integral component of endoplasmic reticulum membrane1.38E-02
45GO:0005794: Golgi apparatus1.42E-02
46GO:0005875: microtubule associated complex1.49E-02
47GO:0005758: mitochondrial intermembrane space1.60E-02
48GO:0009504: cell plate2.90E-02
49GO:0019898: extrinsic component of membrane2.90E-02
50GO:0016020: membrane4.03E-02
51GO:0005615: extracellular space4.08E-02
52GO:0005887: integral component of plasma membrane4.15E-02
Gene type



Gene DE type