Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT2G04620

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0032260: response to jasmonic acid stimulus involved in jasmonic acid and ethylene-dependent systemic resistance0.00E+00
2GO:0048219: inter-Golgi cisterna vesicle-mediated transport0.00E+00
3GO:0015833: peptide transport0.00E+00
4GO:0052544: defense response by callose deposition in cell wall1.44E-05
5GO:0010105: negative regulation of ethylene-activated signaling pathway1.71E-05
6GO:0035494: SNARE complex disassembly2.08E-05
7GO:0052542: defense response by callose deposition5.37E-05
8GO:0009727: detection of ethylene stimulus5.37E-05
9GO:0042939: tripeptide transport5.37E-05
10GO:0009871: jasmonic acid and ethylene-dependent systemic resistance, ethylene mediated signaling pathway9.50E-05
11GO:1900140: regulation of seedling development9.50E-05
12GO:0006882: cellular zinc ion homeostasis1.42E-04
13GO:2001289: lipid X metabolic process1.42E-04
14GO:0006878: cellular copper ion homeostasis1.95E-04
15GO:0042938: dipeptide transport1.95E-04
16GO:0048830: adventitious root development1.95E-04
17GO:0050665: hydrogen peroxide biosynthetic process3.11E-04
18GO:0009759: indole glucosinolate biosynthetic process3.11E-04
19GO:0010337: regulation of salicylic acid metabolic process3.11E-04
20GO:0048280: vesicle fusion with Golgi apparatus3.73E-04
21GO:0009864: induced systemic resistance, jasmonic acid mediated signaling pathway4.37E-04
22GO:0006955: immune response4.37E-04
23GO:0009395: phospholipid catabolic process4.37E-04
24GO:0016559: peroxisome fission5.05E-04
25GO:0009690: cytokinin metabolic process5.05E-04
26GO:0009641: shade avoidance7.94E-04
27GO:0006896: Golgi to vacuole transport7.94E-04
28GO:0009684: indoleacetic acid biosynthetic process8.71E-04
29GO:0009682: induced systemic resistance8.71E-04
30GO:0048768: root hair cell tip growth1.11E-03
31GO:0002237: response to molecule of bacterial origin1.11E-03
32GO:0010053: root epidermal cell differentiation1.20E-03
33GO:0007031: peroxisome organization1.20E-03
34GO:0000162: tryptophan biosynthetic process1.29E-03
35GO:0007010: cytoskeleton organization1.38E-03
36GO:0042742: defense response to bacterium1.48E-03
37GO:0001944: vasculature development1.76E-03
38GO:0009625: response to insect1.76E-03
39GO:0009723: response to ethylene1.82E-03
40GO:0042147: retrograde transport, endosome to Golgi1.96E-03
41GO:0010182: sugar mediated signaling pathway2.17E-03
42GO:0061025: membrane fusion2.28E-03
43GO:0048544: recognition of pollen2.28E-03
44GO:0006623: protein targeting to vacuole2.39E-03
45GO:0006891: intra-Golgi vesicle-mediated transport2.50E-03
46GO:0006635: fatty acid beta-oxidation2.50E-03
47GO:0009630: gravitropism2.61E-03
48GO:0019761: glucosinolate biosynthetic process2.61E-03
49GO:0071281: cellular response to iron ion2.73E-03
50GO:0009408: response to heat2.85E-03
51GO:0006904: vesicle docking involved in exocytosis2.96E-03
52GO:0048364: root development2.97E-03
53GO:0001666: response to hypoxia3.21E-03
54GO:0006888: ER to Golgi vesicle-mediated transport3.58E-03
55GO:0009873: ethylene-activated signaling pathway3.66E-03
56GO:0008219: cell death3.84E-03
57GO:0009737: response to abscisic acid3.85E-03
58GO:0048767: root hair elongation3.97E-03
59GO:0006811: ion transport4.10E-03
60GO:0010119: regulation of stomatal movement4.24E-03
61GO:0006865: amino acid transport4.37E-03
62GO:0006099: tricarboxylic acid cycle4.65E-03
63GO:0006887: exocytosis5.07E-03
64GO:0010114: response to red light5.37E-03
65GO:0051301: cell division5.46E-03
66GO:0009651: response to salt stress6.85E-03
67GO:0006096: glycolytic process7.40E-03
68GO:0048367: shoot system development7.57E-03
69GO:0009626: plant-type hypersensitive response7.73E-03
70GO:0006396: RNA processing8.59E-03
71GO:0018105: peptidyl-serine phosphorylation8.59E-03
72GO:0009845: seed germination1.04E-02
73GO:0009790: embryo development1.10E-02
74GO:0055114: oxidation-reduction process1.11E-02
75GO:0009733: response to auxin1.14E-02
76GO:0040008: regulation of growth1.20E-02
77GO:0009739: response to gibberellin1.34E-02
78GO:0006468: protein phosphorylation1.98E-02
79GO:0010200: response to chitin2.01E-02
80GO:0046777: protein autophosphorylation2.06E-02
81GO:0044550: secondary metabolite biosynthetic process2.08E-02
82GO:0045454: cell redox homeostasis2.23E-02
83GO:0045892: negative regulation of transcription, DNA-templated2.25E-02
84GO:0006886: intracellular protein transport2.28E-02
85GO:0009738: abscisic acid-activated signaling pathway3.81E-02
86GO:0009416: response to light stimulus3.90E-02
87GO:0009611: response to wounding3.96E-02
88GO:0035556: intracellular signal transduction4.05E-02
89GO:0045893: positive regulation of transcription, DNA-templated4.30E-02
RankGO TermAdjusted P value
1GO:0015197: peptide transporter activity0.00E+00
2GO:0015334: high-affinity oligopeptide transporter activity0.00E+00
3GO:0042937: tripeptide transporter activity5.37E-05
4GO:0047364: desulfoglucosinolate sulfotransferase activity5.37E-05
5GO:0016971: flavin-linked sulfhydryl oxidase activity5.37E-05
6GO:0038199: ethylene receptor activity5.37E-05
7GO:0005483: soluble NSF attachment protein activity9.50E-05
8GO:0005200: structural constituent of cytoskeleton1.31E-04
9GO:0051740: ethylene binding1.42E-04
10GO:0004108: citrate (Si)-synthase activity1.42E-04
11GO:0004737: pyruvate decarboxylase activity1.95E-04
12GO:0042936: dipeptide transporter activity1.95E-04
13GO:0019905: syntaxin binding1.95E-04
14GO:0030976: thiamine pyrophosphate binding3.11E-04
15GO:0016831: carboxy-lyase activity4.37E-04
16GO:0004525: ribonuclease III activity5.05E-04
17GO:0030955: potassium ion binding7.18E-04
18GO:0004743: pyruvate kinase activity7.18E-04
19GO:0004673: protein histidine kinase activity7.94E-04
20GO:0000155: phosphorelay sensor kinase activity1.03E-03
21GO:0004022: alcohol dehydrogenase (NAD) activity1.03E-03
22GO:0008146: sulfotransferase activity1.20E-03
23GO:0042802: identical protein binding1.30E-03
24GO:0005506: iron ion binding1.45E-03
25GO:0000287: magnesium ion binding1.55E-03
26GO:0003756: protein disulfide isomerase activity1.86E-03
27GO:0004872: receptor activity2.39E-03
28GO:0016709: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen2.50E-03
29GO:0020037: heme binding2.64E-03
30GO:0000156: phosphorelay response regulator activity2.73E-03
31GO:0009931: calcium-dependent protein serine/threonine kinase activity3.45E-03
32GO:0004683: calmodulin-dependent protein kinase activity3.58E-03
33GO:0003993: acid phosphatase activity4.65E-03
34GO:0000149: SNARE binding4.79E-03
35GO:0005484: SNAP receptor activity5.37E-03
36GO:0030246: carbohydrate binding6.74E-03
37GO:0015171: amino acid transmembrane transporter activity7.07E-03
38GO:0019825: oxygen binding7.13E-03
39GO:0005524: ATP binding7.90E-03
40GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen1.00E-02
41GO:0016301: kinase activity1.48E-02
42GO:0016788: hydrolase activity, acting on ester bonds1.71E-02
43GO:0004497: monooxygenase activity1.96E-02
44GO:0003924: GTPase activity2.59E-02
45GO:0005515: protein binding3.87E-02
46GO:0004674: protein serine/threonine kinase activity4.99E-02
RankGO TermAdjusted P value
1GO:0005802: trans-Golgi network9.13E-06
2GO:0005886: plasma membrane2.48E-05
3GO:0000325: plant-type vacuole2.30E-04
4GO:0005774: vacuolar membrane2.37E-04
5GO:0031201: SNARE complex3.02E-04
6GO:0005798: Golgi-associated vesicle3.11E-04
7GO:0030140: trans-Golgi network transport vesicle3.11E-04
8GO:0005856: cytoskeleton3.67E-04
9GO:0030173: integral component of Golgi membrane3.73E-04
10GO:0012507: ER to Golgi transport vesicle membrane5.05E-04
11GO:0005773: vacuole5.21E-04
12GO:0005779: integral component of peroxisomal membrane5.74E-04
13GO:0009506: plasmodesma6.14E-04
14GO:0016604: nuclear body7.18E-04
15GO:0016021: integral component of membrane8.98E-04
16GO:0005794: Golgi apparatus1.12E-03
17GO:0005795: Golgi stack1.20E-03
18GO:0005768: endosome1.30E-03
19GO:0005770: late endosome2.17E-03
20GO:0000145: exocyst2.61E-03
21GO:0005778: peroxisomal membrane2.96E-03
22GO:0005829: cytosol3.70E-03
23GO:0005783: endoplasmic reticulum3.91E-03
24GO:0031902: late endosome membrane5.07E-03
25GO:0005777: peroxisome5.75E-03
26GO:0010008: endosome membrane7.57E-03
27GO:0009705: plant-type vacuole membrane1.24E-02
28GO:0005615: extracellular space1.34E-02
29GO:0000139: Golgi membrane1.38E-02
30GO:0005789: endoplasmic reticulum membrane1.55E-02
31GO:0016020: membrane2.87E-02
32GO:0009941: chloroplast envelope4.77E-02
Gene type



Gene DE type