Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT2G03550

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0005996: monosaccharide metabolic process0.00E+00
2GO:0090393: sepal giant cell development0.00E+00
3GO:0019265: glycine biosynthetic process, by transamination of glyoxylate0.00E+00
4GO:0071370: cellular response to gibberellin stimulus0.00E+00
5GO:0051881: regulation of mitochondrial membrane potential0.00E+00
6GO:0019253: reductive pentose-phosphate cycle9.18E-07
7GO:0030388: fructose 1,6-bisphosphate metabolic process2.70E-06
8GO:0010275: NAD(P)H dehydrogenase complex assembly2.70E-06
9GO:0006810: transport5.18E-06
10GO:0006000: fructose metabolic process9.82E-06
11GO:0018119: peptidyl-cysteine S-nitrosylation2.13E-05
12GO:0009773: photosynthetic electron transport in photosystem I2.13E-05
13GO:0009409: response to cold2.28E-05
14GO:2000122: negative regulation of stomatal complex development4.05E-05
15GO:0006546: glycine catabolic process4.05E-05
16GO:0010037: response to carbon dioxide4.05E-05
17GO:0015976: carbon utilization4.05E-05
18GO:0019464: glycine decarboxylation via glycine cleavage system4.05E-05
19GO:0005985: sucrose metabolic process4.89E-05
20GO:0015979: photosynthesis1.13E-04
21GO:0016117: carotenoid biosynthetic process1.53E-04
22GO:0090449: phloem glucosinolate loading2.41E-04
23GO:0006659: phosphatidylserine biosynthetic process2.41E-04
24GO:0010597: green leaf volatile biosynthetic process2.41E-04
25GO:1901349: glucosinolate transport2.41E-04
26GO:0008152: metabolic process2.55E-04
27GO:0032544: plastid translation2.70E-04
28GO:0006002: fructose 6-phosphate metabolic process2.70E-04
29GO:0071482: cellular response to light stimulus2.70E-04
30GO:0015786: UDP-glucose transport5.34E-04
31GO:2000123: positive regulation of stomatal complex development5.34E-04
32GO:0006094: gluconeogenesis6.81E-04
33GO:0009767: photosynthetic electron transport chain6.81E-04
34GO:0005986: sucrose biosynthetic process6.81E-04
35GO:0009853: photorespiration7.93E-04
36GO:0071492: cellular response to UV-A8.68E-04
37GO:0006696: ergosterol biosynthetic process8.68E-04
38GO:0015783: GDP-fucose transport8.68E-04
39GO:0090506: axillary shoot meristem initiation8.68E-04
40GO:0009617: response to bacterium1.17E-03
41GO:2001141: regulation of RNA biosynthetic process1.24E-03
42GO:0032877: positive regulation of DNA endoreduplication1.24E-03
43GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly1.24E-03
44GO:0072334: UDP-galactose transmembrane transport1.24E-03
45GO:0080092: regulation of pollen tube growth1.38E-03
46GO:0031122: cytoplasmic microtubule organization1.65E-03
47GO:2000038: regulation of stomatal complex development1.65E-03
48GO:0034440: lipid oxidation1.65E-03
49GO:0006021: inositol biosynthetic process1.65E-03
50GO:0009902: chloroplast relocation1.65E-03
51GO:0006542: glutamine biosynthetic process1.65E-03
52GO:0019676: ammonia assimilation cycle1.65E-03
53GO:0071486: cellular response to high light intensity1.65E-03
54GO:0009765: photosynthesis, light harvesting1.65E-03
55GO:0045727: positive regulation of translation1.65E-03
56GO:0009658: chloroplast organization1.74E-03
57GO:0042631: cellular response to water deprivation1.91E-03
58GO:0046686: response to cadmium ion2.09E-03
59GO:0016120: carotene biosynthetic process2.11E-03
60GO:0006656: phosphatidylcholine biosynthetic process2.11E-03
61GO:0016123: xanthophyll biosynthetic process2.11E-03
62GO:0010375: stomatal complex patterning2.11E-03
63GO:0009735: response to cytokinin2.32E-03
64GO:0009791: post-embryonic development2.37E-03
65GO:0010190: cytochrome b6f complex assembly2.60E-03
66GO:0009117: nucleotide metabolic process2.60E-03
67GO:0010264: myo-inositol hexakisphosphate biosynthetic process2.60E-03
68GO:0016554: cytidine to uridine editing2.60E-03
69GO:0007264: small GTPase mediated signal transduction2.71E-03
70GO:0042742: defense response to bacterium2.76E-03
71GO:0010067: procambium histogenesis3.12E-03
72GO:1901259: chloroplast rRNA processing3.12E-03
73GO:0017148: negative regulation of translation3.12E-03
74GO:0009854: oxidative photosynthetic carbon pathway3.12E-03
75GO:0009955: adaxial/abaxial pattern specification3.12E-03
76GO:0030643: cellular phosphate ion homeostasis3.12E-03
77GO:0045454: cell redox homeostasis3.18E-03
78GO:0007267: cell-cell signaling3.26E-03
79GO:0080027: response to herbivore3.68E-03
80GO:0007155: cell adhesion4.27E-03
81GO:0008610: lipid biosynthetic process4.27E-03
82GO:0009817: defense response to fungus, incompatible interaction4.77E-03
83GO:0009657: plastid organization4.89E-03
84GO:0022900: electron transport chain4.89E-03
85GO:0010119: regulation of stomatal movement5.51E-03
86GO:0010206: photosystem II repair5.54E-03
87GO:0006754: ATP biosynthetic process5.54E-03
88GO:1900865: chloroplast RNA modification6.21E-03
89GO:0006839: mitochondrial transport6.89E-03
90GO:0019538: protein metabolic process6.92E-03
91GO:0043069: negative regulation of programmed cell death6.92E-03
92GO:0019684: photosynthesis, light reaction7.65E-03
93GO:0006415: translational termination7.65E-03
94GO:0006352: DNA-templated transcription, initiation7.65E-03
95GO:0000272: polysaccharide catabolic process7.65E-03
96GO:0009744: response to sucrose7.79E-03
97GO:0009644: response to high light intensity8.43E-03
98GO:0009725: response to hormone9.20E-03
99GO:0010223: secondary shoot formation1.00E-02
100GO:0009887: animal organ morphogenesis1.00E-02
101GO:0009611: response to wounding1.08E-02
102GO:0009969: xyloglucan biosynthetic process1.09E-02
103GO:0080167: response to karrikin1.13E-02
104GO:0006636: unsaturated fatty acid biosynthetic process1.17E-02
105GO:0009833: plant-type primary cell wall biogenesis1.17E-02
106GO:0006071: glycerol metabolic process1.17E-02
107GO:0006096: glycolytic process1.25E-02
108GO:0055114: oxidation-reduction process1.28E-02
109GO:0009695: jasmonic acid biosynthetic process1.35E-02
110GO:0009768: photosynthesis, light harvesting in photosystem I1.35E-02
111GO:0031408: oxylipin biosynthetic process1.45E-02
112GO:0061077: chaperone-mediated protein folding1.45E-02
113GO:0042545: cell wall modification1.46E-02
114GO:0009294: DNA mediated transformation1.64E-02
115GO:0001944: vasculature development1.64E-02
116GO:0006284: base-excision repair1.74E-02
117GO:0019722: calcium-mediated signaling1.74E-02
118GO:0010089: xylem development1.74E-02
119GO:0005975: carbohydrate metabolic process1.91E-02
120GO:0080022: primary root development1.95E-02
121GO:0010087: phloem or xylem histogenesis1.95E-02
122GO:0007059: chromosome segregation2.16E-02
123GO:0019252: starch biosynthetic process2.27E-02
124GO:0008654: phospholipid biosynthetic process2.27E-02
125GO:0006633: fatty acid biosynthetic process2.37E-02
126GO:0071554: cell wall organization or biogenesis2.38E-02
127GO:0007623: circadian rhythm2.60E-02
128GO:0045490: pectin catabolic process2.60E-02
129GO:1901657: glycosyl compound metabolic process2.62E-02
130GO:0051607: defense response to virus2.98E-02
131GO:0009788: negative regulation of abscisic acid-activated signaling pathway3.23E-02
132GO:0009738: abscisic acid-activated signaling pathway3.65E-02
133GO:0018298: protein-chromophore linkage3.75E-02
134GO:0009407: toxin catabolic process4.01E-02
135GO:0010218: response to far red light4.01E-02
136GO:0007568: aging4.15E-02
137GO:0016051: carbohydrate biosynthetic process4.43E-02
138GO:0009637: response to blue light4.43E-02
RankGO TermAdjusted P value
1GO:0052667: phosphomethylethanolamine N-methyltransferase activity0.00E+00
2GO:0045435: lycopene epsilon cyclase activity0.00E+00
3GO:0004760: serine-pyruvate transaminase activity0.00E+00
4GO:0008962: phosphatidylglycerophosphatase activity0.00E+00
5GO:0046905: phytoene synthase activity0.00E+00
6GO:0050278: sedoheptulose-bisphosphatase activity0.00E+00
7GO:0008465: glycerate dehydrogenase activity0.00E+00
8GO:0016767: geranylgeranyl-diphosphate geranylgeranyltransferase activity0.00E+00
9GO:0050281: serine-glyoxylate transaminase activity0.00E+00
10GO:0009974: zeinoxanthin epsilon hydroxylase activity0.00E+00
11GO:0051920: peroxiredoxin activity1.86E-06
12GO:0004618: phosphoglycerate kinase activity2.70E-06
13GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity2.70E-06
14GO:0016209: antioxidant activity4.58E-06
15GO:0004375: glycine dehydrogenase (decarboxylating) activity2.23E-05
16GO:0005528: FK506 binding6.85E-05
17GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity1.30E-04
18GO:0008568: microtubule-severing ATPase activity2.41E-04
19GO:0051996: squalene synthase activity2.41E-04
20GO:0010313: phytochrome binding2.41E-04
21GO:0090448: glucosinolate:proton symporter activity2.41E-04
22GO:0047259: glucomannan 4-beta-mannosyltransferase activity2.41E-04
23GO:0004560: alpha-L-fucosidase activity2.41E-04
24GO:0080132: fatty acid alpha-hydroxylase activity2.41E-04
25GO:0004575: sucrose alpha-glucosidase activity3.89E-04
26GO:0005089: Rho guanyl-nucleotide exchange factor activity5.25E-04
27GO:0004512: inositol-3-phosphate synthase activity5.34E-04
28GO:0008967: phosphoglycolate phosphatase activity5.34E-04
29GO:0004310: farnesyl-diphosphate farnesyltransferase activity5.34E-04
30GO:0000234: phosphoethanolamine N-methyltransferase activity5.34E-04
31GO:0042389: omega-3 fatty acid desaturase activity5.34E-04
32GO:0010297: heteropolysaccharide binding5.34E-04
33GO:0004047: aminomethyltransferase activity5.34E-04
34GO:0004089: carbonate dehydratase activity6.81E-04
35GO:0031072: heat shock protein binding6.81E-04
36GO:0004148: dihydrolipoyl dehydrogenase activity8.68E-04
37GO:0016165: linoleate 13S-lipoxygenase activity8.68E-04
38GO:0005457: GDP-fucose transmembrane transporter activity8.68E-04
39GO:0035529: NADH pyrophosphatase activity1.24E-03
40GO:0016149: translation release factor activity, codon specific1.24E-03
41GO:0005460: UDP-glucose transmembrane transporter activity1.24E-03
42GO:0048027: mRNA 5'-UTR binding1.24E-03
43GO:0003755: peptidyl-prolyl cis-trans isomerase activity1.31E-03
44GO:0004659: prenyltransferase activity1.65E-03
45GO:0001053: plastid sigma factor activity1.65E-03
46GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor1.65E-03
47GO:0008453: alanine-glyoxylate transaminase activity1.65E-03
48GO:0016987: sigma factor activity1.65E-03
49GO:0016702: oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen2.11E-03
50GO:0004356: glutamate-ammonia ligase activity2.11E-03
51GO:0008725: DNA-3-methyladenine glycosylase activity2.11E-03
52GO:0005459: UDP-galactose transmembrane transporter activity2.11E-03
53GO:0022857: transmembrane transporter activity2.28E-03
54GO:0048038: quinone binding2.54E-03
55GO:0042578: phosphoric ester hydrolase activity2.60E-03
56GO:0008200: ion channel inhibitor activity2.60E-03
57GO:0080030: methyl indole-3-acetate esterase activity2.60E-03
58GO:0051753: mannan synthase activity3.12E-03
59GO:0004723: calcium-dependent protein serine/threonine phosphatase activity3.12E-03
60GO:0019843: rRNA binding3.28E-03
61GO:0003824: catalytic activity3.31E-03
62GO:0043295: glutathione binding3.68E-03
63GO:0016168: chlorophyll binding3.87E-03
64GO:0016787: hydrolase activity4.18E-03
65GO:0004564: beta-fructofuranosidase activity4.27E-03
66GO:0009055: electron carrier activity4.87E-03
67GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water4.89E-03
68GO:0008135: translation factor activity, RNA binding4.89E-03
69GO:0008553: hydrogen-exporting ATPase activity, phosphorylative mechanism5.54E-03
70GO:0003747: translation release factor activity5.54E-03
71GO:0008889: glycerophosphodiester phosphodiesterase activity5.54E-03
72GO:0003746: translation elongation factor activity6.04E-03
73GO:0004860: protein kinase inhibitor activity7.65E-03
74GO:0005509: calcium ion binding8.10E-03
75GO:0008378: galactosyltransferase activity8.41E-03
76GO:0051537: 2 iron, 2 sulfur cluster binding8.43E-03
77GO:0004601: peroxidase activity8.61E-03
78GO:0004565: beta-galactosidase activity9.20E-03
79GO:0008266: poly(U) RNA binding1.00E-02
80GO:0008083: growth factor activity1.00E-02
81GO:0045330: aspartyl esterase activity1.17E-02
82GO:0031409: pigment binding1.17E-02
83GO:0004857: enzyme inhibitor activity1.26E-02
84GO:0043424: protein histidine kinase binding1.35E-02
85GO:0030599: pectinesterase activity1.41E-02
86GO:0033612: receptor serine/threonine kinase binding1.45E-02
87GO:0051082: unfolded protein binding1.50E-02
88GO:0016491: oxidoreductase activity1.50E-02
89GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds1.59E-02
90GO:0022891: substrate-specific transmembrane transporter activity1.64E-02
91GO:0003756: protein disulfide isomerase activity1.74E-02
92GO:0005102: receptor binding1.84E-02
93GO:0050662: coenzyme binding2.16E-02
94GO:0004872: receptor activity2.27E-02
95GO:0019901: protein kinase binding2.27E-02
96GO:0004518: nuclease activity2.50E-02
97GO:0016759: cellulose synthase activity2.73E-02
98GO:0008483: transaminase activity2.85E-02
99GO:0008194: UDP-glycosyltransferase activity2.91E-02
100GO:0016597: amino acid binding2.98E-02
101GO:0016413: O-acetyltransferase activity2.98E-02
102GO:0009931: calcium-dependent protein serine/threonine kinase activity3.35E-02
103GO:0004683: calmodulin-dependent protein kinase activity3.48E-02
104GO:0102483: scopolin beta-glucosidase activity3.48E-02
105GO:0008236: serine-type peptidase activity3.61E-02
106GO:0004222: metalloendopeptidase activity4.01E-02
107GO:0016788: hydrolase activity, acting on ester bonds4.09E-02
108GO:0050897: cobalt ion binding4.15E-02
109GO:0016614: oxidoreductase activity, acting on CH-OH group of donors4.15E-02
110GO:0050660: flavin adenine dinucleotide binding4.63E-02
111GO:0008422: beta-glucosidase activity4.71E-02
112GO:0016740: transferase activity4.84E-02
RankGO TermAdjusted P value
1GO:0009344: nitrite reductase complex [NAD(P)H]0.00E+00
2GO:0009507: chloroplast3.12E-29
3GO:0009535: chloroplast thylakoid membrane6.36E-18
4GO:0009941: chloroplast envelope1.77E-13
5GO:0009570: chloroplast stroma5.78E-13
6GO:0048046: apoplast1.27E-11
7GO:0009579: thylakoid3.93E-10
8GO:0009543: chloroplast thylakoid lumen6.13E-10
9GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)8.47E-10
10GO:0010319: stromule2.35E-08
11GO:0009654: photosystem II oxygen evolving complex2.50E-06
12GO:0009534: chloroplast thylakoid6.24E-06
13GO:0005960: glycine cleavage complex2.23E-05
14GO:0005775: vacuolar lumen2.23E-05
15GO:0030095: chloroplast photosystem II4.06E-05
16GO:0019898: extrinsic component of membrane2.33E-04
17GO:0009505: plant-type cell wall3.75E-04
18GO:0010287: plastoglobule5.10E-04
19GO:0042170: plastid membrane5.34E-04
20GO:0000427: plastid-encoded plastid RNA polymerase complex5.34E-04
21GO:0000325: plant-type vacuole7.06E-04
22GO:0005853: eukaryotic translation elongation factor 1 complex8.68E-04
23GO:0009706: chloroplast inner membrane2.47E-03
24GO:0010168: ER body2.60E-03
25GO:0009533: chloroplast stromal thylakoid3.68E-03
26GO:0009539: photosystem II reaction center4.89E-03
27GO:0005763: mitochondrial small ribosomal subunit5.54E-03
28GO:0016020: membrane6.32E-03
29GO:0016324: apical plasma membrane6.92E-03
30GO:0031902: late endosome membrane7.18E-03
31GO:0031977: thylakoid lumen7.18E-03
32GO:0005765: lysosomal membrane7.65E-03
33GO:0000311: plastid large ribosomal subunit8.41E-03
34GO:0009508: plastid chromosome9.20E-03
35GO:0031012: extracellular matrix9.20E-03
36GO:0030076: light-harvesting complex1.09E-02
37GO:0031969: chloroplast membrane1.13E-02
38GO:0005875: microtubule associated complex1.17E-02
39GO:0005773: vacuole1.17E-02
40GO:0009522: photosystem I2.16E-02
41GO:0009523: photosystem II2.27E-02
42GO:0009295: nucleoid2.85E-02
43GO:0005840: ribosome3.21E-02
44GO:0005576: extracellular region3.55E-02
45GO:0009707: chloroplast outer membrane3.75E-02
46GO:0005777: peroxisome4.50E-02
47GO:0000139: Golgi membrane4.64E-02
48GO:0005819: spindle4.71E-02
Gene type



Gene DE type