co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT2G03420

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0006437: tyrosyl-tRNA aminoacylation	0.00E+00
2	GO:0006428: isoleucyl-tRNA aminoacylation	0.00E+00
3	GO:0042407: cristae formation	0.00E+00
4	GO:0005996: monosaccharide metabolic process	0.00E+00
5	GO:0007638: mechanosensory behavior	0.00E+00
6	GO:0070272: proton-transporting ATP synthase complex biogenesis	0.00E+00
7	GO:0032544: plastid translation	9.95E-08
8	GO:0009658: chloroplast organization	6.09E-07
9	GO:0018119: peptidyl-cysteine S-nitrosylation	2.77E-05
10	GO:0009735: response to cytokinin	3.12E-05
11	GO:0015976: carbon utilization	4.90E-05
12	GO:0019464: glycine decarboxylation via glycine cleavage system	4.90E-05
13	GO:2000122: negative regulation of stomatal complex development	4.90E-05
14	GO:0006546: glycine catabolic process	4.90E-05
15	GO:0010037: response to carbon dioxide	4.90E-05
16	GO:0042254: ribosome biogenesis	7.57E-05
17	GO:0006418: tRNA aminoacylation for protein translation	1.02E-04
18	GO:0061077: chaperone-mediated protein folding	1.17E-04
19	GO:0042026: protein refolding	1.56E-04
20	GO:0015979: photosynthesis	1.66E-04
21	GO:0045454: cell redox homeostasis	1.85E-04
22	GO:0016117: carotenoid biosynthetic process	1.93E-04
23	GO:0006436: tryptophanyl-tRNA aminoacylation	2.70E-04
24	GO:0042742: defense response to bacterium	3.21E-04
25	GO:0006412: translation	3.80E-04
26	GO:0030388: fructose 1,6-bisphosphate metabolic process	5.94E-04
27	GO:2000123: positive regulation of stomatal complex development	5.94E-04
28	GO:0010275: NAD(P)H dehydrogenase complex assembly	5.94E-04
29	GO:0043039: tRNA aminoacylation	5.94E-04
30	GO:0006423: cysteinyl-tRNA aminoacylation	5.94E-04
31	GO:0080183: response to photooxidative stress	5.94E-04
32	GO:0009773: photosynthetic electron transport in photosystem I	6.14E-04
33	GO:0006415: translational termination	6.14E-04
34	GO:0009409: response to cold	6.84E-04
35	GO:0009767: photosynthetic electron transport chain	7.96E-04
36	GO:0006810: transport	8.33E-04
37	GO:0010020: chloroplast fission	8.95E-04
38	GO:0010207: photosystem II assembly	8.95E-04
39	GO:0006065: UDP-glucuronate biosynthetic process	9.62E-04
40	GO:0090506: axillary shoot meristem initiation	9.62E-04
41	GO:0006000: fructose metabolic process	9.62E-04
42	GO:0071492: cellular response to UV-A	9.62E-04
43	GO:0006696: ergosterol biosynthetic process	9.62E-04
44	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	1.38E-03
45	GO:0007231: osmosensory signaling pathway	1.38E-03
46	GO:0051085: chaperone mediated protein folding requiring cofactor	1.38E-03
47	GO:0043572: plastid fission	1.38E-03
48	GO:0019676: ammonia assimilation cycle	1.84E-03
49	GO:0071486: cellular response to high light intensity	1.84E-03
50	GO:0009765: photosynthesis, light harvesting	1.84E-03
51	GO:0045727: positive regulation of translation	1.84E-03
52	GO:0033500: carbohydrate homeostasis	1.84E-03
53	GO:2000038: regulation of stomatal complex development	1.84E-03
54	GO:0006542: glutamine biosynthetic process	1.84E-03
55	GO:0016123: xanthophyll biosynthetic process	2.35E-03
56	GO:0010375: stomatal complex patterning	2.35E-03
57	GO:0016120: carotene biosynthetic process	2.35E-03
58	GO:0010236: plastoquinone biosynthetic process	2.35E-03
59	GO:0031365: N-terminal protein amino acid modification	2.35E-03
60	GO:0016554: cytidine to uridine editing	2.90E-03
61	GO:0010190: cytochrome b6f complex assembly	2.90E-03
62	GO:0010555: response to mannitol	3.49E-03
63	GO:0009955: adaxial/abaxial pattern specification	3.49E-03
64	GO:0010067: procambium histogenesis	3.49E-03
65	GO:1901259: chloroplast rRNA processing	3.49E-03
66	GO:0006458: 'de novo' protein folding	3.49E-03
67	GO:0007267: cell-cell signaling	3.83E-03
68	GO:0048564: photosystem I assembly	4.77E-03
69	GO:0008610: lipid biosynthetic process	4.77E-03
70	GO:0009642: response to light intensity	4.77E-03
71	GO:0006002: fructose 6-phosphate metabolic process	5.47E-03
72	GO:0009657: plastid organization	5.47E-03
73	GO:0009817: defense response to fungus, incompatible interaction	5.61E-03
74	GO:0048481: plant ovule development	5.61E-03
75	GO:0010206: photosystem II repair	6.20E-03
76	GO:0048589: developmental growth	6.20E-03
77	GO:0010119: regulation of stomatal movement	6.49E-03
78	GO:0043067: regulation of programmed cell death	6.96E-03
79	GO:1900865: chloroplast RNA modification	6.96E-03
80	GO:0043069: negative regulation of programmed cell death	7.75E-03
81	GO:0006631: fatty acid metabolic process	8.46E-03
82	GO:0006816: calcium ion transport	8.58E-03
83	GO:0019684: photosynthesis, light reaction	8.58E-03
84	GO:0043085: positive regulation of catalytic activity	8.58E-03
85	GO:0000272: polysaccharide catabolic process	8.58E-03
86	GO:0045037: protein import into chloroplast stroma	9.44E-03
87	GO:0006094: gluconeogenesis	1.03E-02
88	GO:0005986: sucrose biosynthetic process	1.03E-02
89	GO:0019253: reductive pentose-phosphate cycle	1.12E-02
90	GO:0010223: secondary shoot formation	1.12E-02
91	GO:0070588: calcium ion transmembrane transport	1.22E-02
92	GO:0006636: unsaturated fatty acid biosynthetic process	1.32E-02
93	GO:0019344: cysteine biosynthetic process	1.42E-02
94	GO:0000027: ribosomal large subunit assembly	1.42E-02
95	GO:0007010: cytoskeleton organization	1.42E-02
96	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	1.46E-02
97	GO:0007017: microtubule-based process	1.52E-02
98	GO:0042545: cell wall modification	1.72E-02
99	GO:0007005: mitochondrion organization	1.73E-02
100	GO:0080092: regulation of pollen tube growth	1.73E-02
101	GO:0009294: DNA mediated transformation	1.84E-02
102	GO:0001944: vasculature development	1.84E-02
103	GO:0010089: xylem development	1.95E-02
104	GO:0006284: base-excision repair	1.95E-02
105	GO:0019722: calcium-mediated signaling	1.95E-02
106	GO:0006457: protein folding	1.97E-02
107	GO:0055114: oxidation-reduction process	2.17E-02
108	GO:0042631: cellular response to water deprivation	2.19E-02
109	GO:0000413: protein peptidyl-prolyl isomerization	2.19E-02
110	GO:0010087: phloem or xylem histogenesis	2.19E-02
111	GO:0006662: glycerol ether metabolic process	2.31E-02
112	GO:0010197: polar nucleus fusion	2.31E-02
113	GO:0019252: starch biosynthetic process	2.55E-02
114	GO:0046686: response to cadmium ion	2.64E-02
115	GO:0006633: fatty acid biosynthetic process	2.79E-02
116	GO:0007264: small GTPase mediated signal transduction	2.81E-02
117	GO:0006413: translational initiation	2.85E-02
118	GO:0045490: pectin catabolic process	3.06E-02
119	GO:0010286: heat acclimation	3.21E-02
120	GO:0010027: thylakoid membrane organization	3.48E-02
121	GO:0009627: systemic acquired resistance	3.77E-02
122	GO:0015995: chlorophyll biosynthetic process	3.91E-02
123	GO:0016311: dephosphorylation	4.06E-02
124	GO:0018298: protein-chromophore linkage	4.21E-02
125	GO:0008219: cell death	4.21E-02
126	GO:0048767: root hair elongation	4.36E-02
127	GO:0009813: flavonoid biosynthetic process	4.36E-02
128	GO:0009407: toxin catabolic process	4.51E-02
129	GO:0007568: aging	4.66E-02
130	GO:0009853: photorespiration	4.97E-02
131	GO:0016051: carbohydrate biosynthetic process	4.97E-02

Rank	GO Term	Adjusted P value
1	GO:0016767: geranylgeranyl-diphosphate geranylgeranyltransferase activity	0.00E+00
2	GO:0009974: zeinoxanthin epsilon hydroxylase activity	0.00E+00
3	GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity	0.00E+00
4	GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity	0.00E+00
5	GO:0045435: lycopene epsilon cyclase activity	0.00E+00
6	GO:0004822: isoleucine-tRNA ligase activity	0.00E+00
7	GO:0046905: phytoene synthase activity	0.00E+00
8	GO:0008962: phosphatidylglycerophosphatase activity	0.00E+00
9	GO:0050278: sedoheptulose-bisphosphatase activity	0.00E+00
10	GO:0019843: rRNA binding	1.28E-09
11	GO:0051920: peroxiredoxin activity	1.65E-08
12	GO:0016209: antioxidant activity	5.89E-08
13	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	1.08E-06
14	GO:0005528: FK506 binding	2.83E-06
15	GO:0003735: structural constituent of ribosome	7.51E-06
16	GO:0004375: glycine dehydrogenase (decarboxylating) activity	2.72E-05
17	GO:0016149: translation release factor activity, codon specific	2.72E-05
18	GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity	1.56E-04
19	GO:0004812: aminoacyl-tRNA ligase activity	1.93E-04
20	GO:0047259: glucomannan 4-beta-mannosyltransferase activity	2.70E-04
21	GO:0080132: fatty acid alpha-hydroxylase activity	2.70E-04
22	GO:0004831: tyrosine-tRNA ligase activity	2.70E-04
23	GO:0051996: squalene synthase activity	2.70E-04
24	GO:0004830: tryptophan-tRNA ligase activity	2.70E-04
25	GO:0003747: translation release factor activity	3.84E-04
26	GO:0010297: heteropolysaccharide binding	5.94E-04
27	GO:0004047: aminomethyltransferase activity	5.94E-04
28	GO:0004817: cysteine-tRNA ligase activity	5.94E-04
29	GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity	5.94E-04
30	GO:0008967: phosphoglycolate phosphatase activity	5.94E-04
31	GO:0004310: farnesyl-diphosphate farnesyltransferase activity	5.94E-04
32	GO:0042389: omega-3 fatty acid desaturase activity	5.94E-04
33	GO:0044183: protein binding involved in protein folding	6.14E-04
34	GO:0004089: carbonate dehydratase activity	7.96E-04
35	GO:0003979: UDP-glucose 6-dehydrogenase activity	9.62E-04
36	GO:0003913: DNA photolyase activity	9.62E-04
37	GO:0002161: aminoacyl-tRNA editing activity	9.62E-04
38	GO:0004148: dihydrolipoyl dehydrogenase activity	9.62E-04
39	GO:0005504: fatty acid binding	9.62E-04
40	GO:0030267: glyoxylate reductase (NADP) activity	9.62E-04
41	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	1.84E-03
42	GO:0045430: chalcone isomerase activity	1.84E-03
43	GO:0004607: phosphatidylcholine-sterol O-acyltransferase activity	1.84E-03
44	GO:0004601: peroxidase activity	2.24E-03
45	GO:0004356: glutamate-ammonia ligase activity	2.35E-03
46	GO:0008725: DNA-3-methyladenine glycosylase activity	2.35E-03
47	GO:0008374: O-acyltransferase activity	2.35E-03
48	GO:0016773: phosphotransferase activity, alcohol group as acceptor	2.35E-03
49	GO:0080030: methyl indole-3-acetate esterase activity	2.90E-03
50	GO:0042578: phosphoric ester hydrolase activity	2.90E-03
51	GO:0008200: ion channel inhibitor activity	2.90E-03
52	GO:0051082: unfolded protein binding	3.03E-03
53	GO:0051753: mannan synthase activity	3.49E-03
54	GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity	3.49E-03
55	GO:0008237: metallopeptidase activity	3.83E-03
56	GO:0005200: structural constituent of cytoskeleton	3.83E-03
57	GO:0008235: metalloexopeptidase activity	4.12E-03
58	GO:0009881: photoreceptor activity	4.12E-03
59	GO:0043295: glutathione binding	4.12E-03
60	GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water	5.47E-03
61	GO:0004222: metalloendopeptidase activity	6.19E-03
62	GO:0008047: enzyme activator activity	7.75E-03
63	GO:0005089: Rho guanyl-nucleotide exchange factor activity	8.58E-03
64	GO:0004177: aminopeptidase activity	8.58E-03
65	GO:0000049: tRNA binding	9.44E-03
66	GO:0031072: heat shock protein binding	1.03E-02
67	GO:0005262: calcium channel activity	1.03E-02
68	GO:0004565: beta-galactosidase activity	1.03E-02
69	GO:0005198: structural molecule activity	1.03E-02
70	GO:0045330: aspartyl esterase activity	1.37E-02
71	GO:0004857: enzyme inhibitor activity	1.42E-02
72	GO:0003824: catalytic activity	1.45E-02
73	GO:0008324: cation transmembrane transporter activity	1.52E-02
74	GO:0004176: ATP-dependent peptidase activity	1.62E-02
75	GO:0033612: receptor serine/threonine kinase binding	1.62E-02
76	GO:0030599: pectinesterase activity	1.67E-02
77	GO:0022891: substrate-specific transmembrane transporter activity	1.84E-02
78	GO:0005102: receptor binding	2.07E-02
79	GO:0047134: protein-disulfide reductase activity	2.07E-02
80	GO:0003924: GTPase activity	2.28E-02
81	GO:0001085: RNA polymerase II transcription factor binding	2.31E-02
82	GO:0004791: thioredoxin-disulfide reductase activity	2.43E-02
83	GO:0050662: coenzyme binding	2.43E-02
84	GO:0009055: electron carrier activity	2.49E-02
85	GO:0019901: protein kinase binding	2.55E-02
86	GO:0048038: quinone binding	2.68E-02
87	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	2.94E-02
88	GO:0016759: cellulose synthase activity	3.07E-02
89	GO:0008483: transaminase activity	3.21E-02
90	GO:0005509: calcium ion binding	3.38E-02
91	GO:0003743: translation initiation factor activity	3.57E-02
92	GO:0016168: chlorophyll binding	3.63E-02
93	GO:0008236: serine-type peptidase activity	4.06E-02
94	GO:0030145: manganese ion binding	4.66E-02
95	GO:0001228: transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding	4.66E-02
96	GO:0050897: cobalt ion binding	4.66E-02
97	GO:0016788: hydrolase activity, acting on ester bonds	4.80E-02

Rank	GO Term	Adjusted P value
1	GO:0009571: proplastid stroma	0.00E+00
2	GO:0009344: nitrite reductase complex [NAD(P)H]	0.00E+00
3	GO:0009507: chloroplast	4.16E-44
4	GO:0009570: chloroplast stroma	9.80E-29
5	GO:0009941: chloroplast envelope	5.72E-22
6	GO:0009535: chloroplast thylakoid membrane	9.71E-22
7	GO:0009579: thylakoid	1.30E-15
8	GO:0009543: chloroplast thylakoid lumen	5.07E-14
9	GO:0048046: apoplast	3.41E-09
10	GO:0009654: photosystem II oxygen evolving complex	7.07E-08
11	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	1.59E-07
12	GO:0031977: thylakoid lumen	5.16E-07
13	GO:0030095: chloroplast photosystem II	1.32E-06
14	GO:0010319: stromule	1.40E-06
15	GO:0009534: chloroplast thylakoid	1.44E-06
16	GO:0005840: ribosome	2.34E-06
17	GO:0019898: extrinsic component of membrane	1.77E-05
18	GO:0005960: glycine cleavage complex	2.72E-05
19	GO:0000311: plastid large ribosomal subunit	3.48E-05
20	GO:0009706: chloroplast inner membrane	5.03E-04
21	GO:0000427: plastid-encoded plastid RNA polymerase complex	5.94E-04
22	GO:0042170: plastid membrane	5.94E-04
23	GO:0015934: large ribosomal subunit	8.65E-04
24	GO:0022626: cytosolic ribosome	8.68E-04
25	GO:0005875: microtubule associated complex	1.11E-03
26	GO:0009536: plastid	1.77E-03
27	GO:0031969: chloroplast membrane	3.10E-03
28	GO:0010287: plastoglobule	3.77E-03
29	GO:0009533: chloroplast stromal thylakoid	4.12E-03
30	GO:0009539: photosystem II reaction center	5.47E-03
31	GO:0009505: plant-type cell wall	5.94E-03
32	GO:0005763: mitochondrial small ribosomal subunit	6.20E-03
33	GO:0045298: tubulin complex	6.20E-03
34	GO:0016324: apical plasma membrane	7.75E-03
35	GO:0031012: extracellular matrix	1.03E-02
36	GO:0005874: microtubule	1.34E-02
37	GO:0042651: thylakoid membrane	1.52E-02
38	GO:0009532: plastid stroma	1.62E-02
39	GO:0005618: cell wall	2.19E-02
40	GO:0009523: photosystem II	2.55E-02
41	GO:0031225: anchored component of membrane	2.60E-02
42	GO:0005778: peroxisomal membrane	3.21E-02
43	GO:0005667: transcription factor complex	3.77E-02
44	GO:0016020: membrane	3.82E-02
45	GO:0046658: anchored component of plasma membrane	4.04E-02