co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT2G01590

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0042493: response to drug	0.00E+00
2	GO:0042371: vitamin K biosynthetic process	0.00E+00
3	GO:0006399: tRNA metabolic process	0.00E+00
4	GO:0002184: cytoplasmic translational termination	0.00E+00
5	GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate	0.00E+00
6	GO:0006780: uroporphyrinogen III biosynthetic process	0.00E+00
7	GO:0090071: negative regulation of ribosome biogenesis	0.00E+00
8	GO:0033494: ferulate metabolic process	0.00E+00
9	GO:0090470: shoot organ boundary specification	0.00E+00
10	GO:0061635: regulation of protein complex stability	0.00E+00
11	GO:0035970: peptidyl-threonine dephosphorylation	0.00E+00
12	GO:0015979: photosynthesis	2.67E-13
13	GO:0009773: photosynthetic electron transport in photosystem I	3.40E-10
14	GO:0010196: nonphotochemical quenching	1.22E-07
15	GO:0010027: thylakoid membrane organization	3.57E-07
16	GO:0032544: plastid translation	3.71E-07
17	GO:0006412: translation	3.43E-06
18	GO:0010207: photosystem II assembly	4.67E-06
19	GO:0042254: ribosome biogenesis	5.77E-06
20	GO:0090391: granum assembly	2.48E-05
21	GO:0010236: plastoquinone biosynthetic process	1.48E-04
22	GO:0015995: chlorophyll biosynthetic process	1.67E-04
23	GO:0009735: response to cytokinin	1.83E-04
24	GO:0042372: phylloquinone biosynthetic process	2.85E-04
25	GO:0009772: photosynthetic electron transport in photosystem II	3.69E-04
26	GO:1904964: positive regulation of phytol biosynthetic process	3.99E-04
27	GO:0034337: RNA folding	3.99E-04
28	GO:0071596: ubiquitin-dependent protein catabolic process via the N-end rule pathway	3.99E-04
29	GO:0071588: hydrogen peroxide mediated signaling pathway	3.99E-04
30	GO:0010729: positive regulation of hydrogen peroxide biosynthetic process	3.99E-04
31	GO:1904966: positive regulation of vitamin E biosynthetic process	3.99E-04
32	GO:0071277: cellular response to calcium ion	3.99E-04
33	GO:0000481: maturation of 5S rRNA	3.99E-04
34	GO:0042335: cuticle development	4.62E-04
35	GO:0071482: cellular response to light stimulus	5.64E-04
36	GO:0010205: photoinhibition	7.98E-04
37	GO:0030388: fructose 1,6-bisphosphate metabolic process	8.66E-04
38	GO:0010024: phytochromobilin biosynthetic process	8.66E-04
39	GO:0010115: regulation of abscisic acid biosynthetic process	8.66E-04
40	GO:1902326: positive regulation of chlorophyll biosynthetic process	8.66E-04
41	GO:0034755: iron ion transmembrane transport	8.66E-04
42	GO:0009750: response to fructose	1.07E-03
43	GO:0016024: CDP-diacylglycerol biosynthetic process	1.22E-03
44	GO:0009658: chloroplast organization	1.27E-03
45	GO:0015714: phosphoenolpyruvate transport	1.40E-03
46	GO:0006000: fructose metabolic process	1.40E-03
47	GO:0006954: inflammatory response	1.40E-03
48	GO:0006518: peptide metabolic process	1.40E-03
49	GO:0006788: heme oxidation	1.40E-03
50	GO:0018298: protein-chromophore linkage	1.48E-03
51	GO:0010143: cutin biosynthetic process	1.56E-03
52	GO:0006636: unsaturated fatty acid biosynthetic process	1.95E-03
53	GO:2001141: regulation of RNA biosynthetic process	2.03E-03
54	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	2.03E-03
55	GO:0010371: regulation of gibberellin biosynthetic process	2.03E-03
56	GO:0006166: purine ribonucleoside salvage	2.03E-03
57	GO:0071484: cellular response to light intensity	2.03E-03
58	GO:0009152: purine ribonucleotide biosynthetic process	2.03E-03
59	GO:0046653: tetrahydrofolate metabolic process	2.03E-03
60	GO:0009800: cinnamic acid biosynthetic process	2.03E-03
61	GO:0009650: UV protection	2.03E-03
62	GO:1901332: negative regulation of lateral root development	2.03E-03
63	GO:0006168: adenine salvage	2.03E-03
64	GO:0061077: chaperone-mediated protein folding	2.62E-03
65	GO:0031408: oxylipin biosynthetic process	2.62E-03
66	GO:0045727: positive regulation of translation	2.73E-03
67	GO:0015994: chlorophyll metabolic process	2.73E-03
68	GO:0015713: phosphoglycerate transport	2.73E-03
69	GO:0006869: lipid transport	3.00E-03
70	GO:0009306: protein secretion	3.40E-03
71	GO:0031365: N-terminal protein amino acid modification	3.49E-03
72	GO:0006461: protein complex assembly	3.49E-03
73	GO:0044209: AMP salvage	3.49E-03
74	GO:0080110: sporopollenin biosynthetic process	3.49E-03
75	GO:0006564: L-serine biosynthetic process	3.49E-03
76	GO:0016042: lipid catabolic process	3.51E-03
77	GO:0000413: protein peptidyl-prolyl isomerization	3.99E-03
78	GO:0006561: proline biosynthetic process	4.32E-03
79	GO:0010405: arabinogalactan protein metabolic process	4.32E-03
80	GO:0042549: photosystem II stabilization	4.32E-03
81	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	4.32E-03
82	GO:0009913: epidermal cell differentiation	4.32E-03
83	GO:0006655: phosphatidylglycerol biosynthetic process	4.32E-03
84	GO:0006086: acetyl-CoA biosynthetic process from pyruvate	4.32E-03
85	GO:0006559: L-phenylalanine catabolic process	4.32E-03
86	GO:0018258: protein O-linked glycosylation via hydroxyproline	4.32E-03
87	GO:0035435: phosphate ion transmembrane transport	4.32E-03
88	GO:0010189: vitamin E biosynthetic process	5.20E-03
89	GO:0010019: chloroplast-nucleus signaling pathway	5.20E-03
90	GO:0017148: negative regulation of translation	5.20E-03
91	GO:0009395: phospholipid catabolic process	6.15E-03
92	GO:1900057: positive regulation of leaf senescence	6.15E-03
93	GO:0010444: guard mother cell differentiation	6.15E-03
94	GO:0006400: tRNA modification	6.15E-03
95	GO:0055075: potassium ion homeostasis	7.15E-03
96	GO:0048564: photosystem I assembly	7.15E-03
97	GO:0030091: protein repair	7.15E-03
98	GO:0008610: lipid biosynthetic process	7.15E-03
99	GO:0009819: drought recovery	7.15E-03
100	GO:0006605: protein targeting	7.15E-03
101	GO:0009704: de-etiolation	7.15E-03
102	GO:0032508: DNA duplex unwinding	7.15E-03
103	GO:0017004: cytochrome complex assembly	8.21E-03
104	GO:0006002: fructose 6-phosphate metabolic process	8.21E-03
105	GO:0009657: plastid organization	8.21E-03
106	GO:0010411: xyloglucan metabolic process	9.07E-03
107	GO:0000373: Group II intron splicing	9.31E-03
108	GO:0090305: nucleic acid phosphodiester bond hydrolysis	9.31E-03
109	GO:0010206: photosystem II repair	9.31E-03
110	GO:0034765: regulation of ion transmembrane transport	9.31E-03
111	GO:0090333: regulation of stomatal closure	9.31E-03
112	GO:0006810: transport	9.37E-03
113	GO:0006779: porphyrin-containing compound biosynthetic process	1.05E-02
114	GO:0006633: fatty acid biosynthetic process	1.13E-02
115	GO:0009688: abscisic acid biosynthetic process	1.17E-02
116	GO:0006782: protoporphyrinogen IX biosynthetic process	1.17E-02
117	GO:0009637: response to blue light	1.28E-02
118	GO:0018119: peptidyl-cysteine S-nitrosylation	1.29E-02
119	GO:0000038: very long-chain fatty acid metabolic process	1.29E-02
120	GO:0043085: positive regulation of catalytic activity	1.29E-02
121	GO:0008285: negative regulation of cell proliferation	1.29E-02
122	GO:0006879: cellular iron ion homeostasis	1.29E-02
123	GO:0006352: DNA-templated transcription, initiation	1.29E-02
124	GO:0034599: cellular response to oxidative stress	1.34E-02
125	GO:0015706: nitrate transport	1.43E-02
126	GO:0005983: starch catabolic process	1.43E-02
127	GO:0055114: oxidation-reduction process	1.45E-02
128	GO:0009725: response to hormone	1.56E-02
129	GO:0006094: gluconeogenesis	1.56E-02
130	GO:0005986: sucrose biosynthetic process	1.56E-02
131	GO:0010628: positive regulation of gene expression	1.56E-02
132	GO:0006006: glucose metabolic process	1.56E-02
133	GO:0008152: metabolic process	1.58E-02
134	GO:0010114: response to red light	1.65E-02
135	GO:0019253: reductive pentose-phosphate cycle	1.70E-02
136	GO:0042546: cell wall biogenesis	1.72E-02
137	GO:0010167: response to nitrate	1.84E-02
138	GO:0071732: cellular response to nitric oxide	1.84E-02
139	GO:0010025: wax biosynthetic process	1.99E-02
140	GO:0009737: response to abscisic acid	2.05E-02
141	GO:0009409: response to cold	2.14E-02
142	GO:0006487: protein N-linked glycosylation	2.14E-02
143	GO:0000027: ribosomal large subunit assembly	2.14E-02
144	GO:0010073: meristem maintenance	2.30E-02
145	GO:0019953: sexual reproduction	2.30E-02
146	GO:0009695: jasmonic acid biosynthetic process	2.30E-02
147	GO:0007017: microtubule-based process	2.30E-02
148	GO:0009768: photosynthesis, light harvesting in photosystem I	2.30E-02
149	GO:0016998: cell wall macromolecule catabolic process	2.46E-02
150	GO:0030245: cellulose catabolic process	2.63E-02
151	GO:0016226: iron-sulfur cluster assembly	2.63E-02
152	GO:0006096: glycolytic process	2.64E-02
153	GO:0071369: cellular response to ethylene stimulus	2.79E-02
154	GO:0010227: floral organ abscission	2.79E-02
155	GO:0009411: response to UV	2.79E-02
156	GO:0080167: response to karrikin	2.91E-02
157	GO:0010584: pollen exine formation	2.96E-02
158	GO:0042127: regulation of cell proliferation	2.96E-02
159	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	3.04E-02
160	GO:0042391: regulation of membrane potential	3.32E-02
161	GO:0010182: sugar mediated signaling pathway	3.50E-02
162	GO:0006662: glycerol ether metabolic process	3.50E-02
163	GO:0045454: cell redox homeostasis	3.64E-02
164	GO:0015986: ATP synthesis coupled proton transport	3.69E-02
165	GO:0000302: response to reactive oxygen species	4.07E-02
166	GO:0002229: defense response to oomycetes	4.07E-02
167	GO:0032259: methylation	4.46E-02
168	GO:0071281: cellular response to iron ion	4.46E-02
169	GO:0042744: hydrogen peroxide catabolic process	4.51E-02
170	GO:0009790: embryo development	4.62E-02
171	GO:0019760: glucosinolate metabolic process	4.66E-02
172	GO:0071805: potassium ion transmembrane transport	4.86E-02

Rank	GO Term	Adjusted P value
1	GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity	0.00E+00
2	GO:0004852: uroporphyrinogen-III synthase activity	0.00E+00
3	GO:0102193: protein-ribulosamine 3-kinase activity	0.00E+00
4	GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity	0.00E+00
5	GO:0010301: xanthoxin dehydrogenase activity	0.00E+00
6	GO:0009979: 16:0 monogalactosyldiacylglycerol desaturase activity	0.00E+00
7	GO:0102550: 2-methyl-6-geranylgeranyl-1,4-benzoquinol methyltransferase activity	0.00E+00
8	GO:0047538: 2-carboxy-D-arabinitol-1-phosphatase activity	0.00E+00
9	GO:0050518: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity	0.00E+00
10	GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity	0.00E+00
11	GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity	0.00E+00
12	GO:0008756: o-succinylbenzoate-CoA ligase activity	0.00E+00
13	GO:0005528: FK506 binding	7.06E-11
14	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	6.11E-10
15	GO:0019843: rRNA binding	8.73E-10
16	GO:0003735: structural constituent of ribosome	9.48E-07
17	GO:0043023: ribosomal large subunit binding	5.41E-05
18	GO:0001872: (1->3)-beta-D-glucan binding	5.41E-05
19	GO:0004366: glycerol-3-phosphate O-acyltransferase activity	2.12E-04
20	GO:0004723: calcium-dependent protein serine/threonine phosphatase activity	2.85E-04
21	GO:0016788: hydrolase activity, acting on ester bonds	2.91E-04
22	GO:0005509: calcium ion binding	3.46E-04
23	GO:0051741: 2-methyl-6-phytyl-1,4-benzoquinone methyltransferase activity	3.99E-04
24	GO:0050139: nicotinate-N-glucosyltransferase activity	3.99E-04
25	GO:0030794: (S)-coclaurine-N-methyltransferase activity	3.99E-04
26	GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity	3.99E-04
27	GO:0015121: phosphoenolpyruvate:phosphate antiporter activity	3.99E-04
28	GO:0004321: fatty-acyl-CoA synthase activity	3.99E-04
29	GO:0045485: omega-6 fatty acid desaturase activity	3.99E-04
30	GO:0047746: chlorophyllase activity	8.66E-04
31	GO:0004617: phosphoglycerate dehydrogenase activity	8.66E-04
32	GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity	8.66E-04
33	GO:0016630: protochlorophyllide reductase activity	8.66E-04
34	GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity	8.66E-04
35	GO:0016168: chlorophyll binding	1.14E-03
36	GO:0016742: hydroxymethyl-, formyl- and related transferase activity	1.40E-03
37	GO:0008864: formyltetrahydrofolate deformylase activity	1.40E-03
38	GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	1.40E-03
39	GO:0050734: hydroxycinnamoyltransferase activity	1.40E-03
40	GO:0045548: phenylalanine ammonia-lyase activity	1.40E-03
41	GO:0008097: 5S rRNA binding	2.03E-03
42	GO:0003999: adenine phosphoribosyltransferase activity	2.03E-03
43	GO:0003830: beta-1,4-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity	2.03E-03
44	GO:0016851: magnesium chelatase activity	2.03E-03
45	GO:0052689: carboxylic ester hydrolase activity	2.21E-03
46	GO:0016491: oxidoreductase activity	2.61E-03
47	GO:0015120: phosphoglycerate transmembrane transporter activity	2.73E-03
48	GO:0004659: prenyltransferase activity	2.73E-03
49	GO:0001053: plastid sigma factor activity	2.73E-03
50	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	2.73E-03
51	GO:0004739: pyruvate dehydrogenase (acetyl-transferring) activity	2.73E-03
52	GO:0016987: sigma factor activity	2.73E-03
53	GO:1990137: plant seed peroxidase activity	2.73E-03
54	GO:0043495: protein anchor	2.73E-03
55	GO:0004392: heme oxygenase (decyclizing) activity	2.73E-03
56	GO:0022891: substrate-specific transmembrane transporter activity	3.13E-03
57	GO:0003959: NADPH dehydrogenase activity	3.49E-03
58	GO:0004040: amidase activity	3.49E-03
59	GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity	4.32E-03
60	GO:1990714: hydroxyproline O-galactosyltransferase activity	4.32E-03
61	GO:0004130: cytochrome-c peroxidase activity	4.32E-03
62	GO:0016208: AMP binding	4.32E-03
63	GO:0016688: L-ascorbate peroxidase activity	4.32E-03
64	GO:0050662: coenzyme binding	4.62E-03
65	GO:0005242: inward rectifier potassium channel activity	5.20E-03
66	GO:0051920: peroxiredoxin activity	5.20E-03
67	GO:0033743: peptide-methionine (R)-S-oxide reductase activity	5.20E-03
68	GO:0051753: mannan synthase activity	5.20E-03
69	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	5.21E-03
70	GO:0016762: xyloglucan:xyloglucosyl transferase activity	5.31E-03
71	GO:0008235: metalloexopeptidase activity	6.15E-03
72	GO:0019899: enzyme binding	6.15E-03
73	GO:0016746: transferase activity, transferring acyl groups	6.60E-03
74	GO:0016209: antioxidant activity	7.15E-03
75	GO:0052747: sinapyl alcohol dehydrogenase activity	7.15E-03
76	GO:0004033: aldo-keto reductase (NADP) activity	7.15E-03
77	GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water	8.21E-03
78	GO:0016798: hydrolase activity, acting on glycosyl bonds	9.07E-03
79	GO:0030247: polysaccharide binding	9.07E-03
80	GO:0016207: 4-coumarate-CoA ligase activity	9.31E-03
81	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	1.01E-02
82	GO:0015112: nitrate transmembrane transporter activity	1.05E-02
83	GO:0005381: iron ion transmembrane transporter activity	1.05E-02
84	GO:0004222: metalloendopeptidase activity	1.11E-02
85	GO:0008047: enzyme activator activity	1.17E-02
86	GO:0004177: aminopeptidase activity	1.29E-02
87	GO:0015386: potassium:proton antiporter activity	1.29E-02
88	GO:0045551: cinnamyl-alcohol dehydrogenase activity	1.43E-02
89	GO:0031072: heat shock protein binding	1.56E-02
90	GO:0015114: phosphate ion transmembrane transporter activity	1.56E-02
91	GO:0004565: beta-galactosidase activity	1.56E-02
92	GO:0004022: alcohol dehydrogenase (NAD) activity	1.56E-02
93	GO:0046872: metal ion binding	1.58E-02
94	GO:0008266: poly(U) RNA binding	1.70E-02
95	GO:0042802: identical protein binding	1.73E-02
96	GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity	1.99E-02
97	GO:0031409: pigment binding	1.99E-02
98	GO:0102336: 3-oxo-arachidoyl-CoA synthase activity	1.99E-02
99	GO:0102337: 3-oxo-cerotoyl-CoA synthase activity	1.99E-02
100	GO:0051287: NAD binding	2.00E-02
101	GO:0008168: methyltransferase activity	2.12E-02
102	GO:0051536: iron-sulfur cluster binding	2.14E-02
103	GO:0008289: lipid binding	2.23E-02
104	GO:0015079: potassium ion transmembrane transporter activity	2.30E-02
105	GO:0008324: cation transmembrane transporter activity	2.30E-02
106	GO:0004176: ATP-dependent peptidase activity	2.46E-02
107	GO:0030570: pectate lyase activity	2.79E-02
108	GO:0008810: cellulase activity	2.79E-02
109	GO:0047134: protein-disulfide reductase activity	3.14E-02
110	GO:0005249: voltage-gated potassium channel activity	3.32E-02
111	GO:0030551: cyclic nucleotide binding	3.32E-02
112	GO:0008080: N-acetyltransferase activity	3.50E-02
113	GO:0046933: proton-transporting ATP synthase activity, rotational mechanism	3.50E-02
114	GO:0004791: thioredoxin-disulfide reductase activity	3.69E-02
115	GO:0004872: receptor activity	3.87E-02
116	GO:0048038: quinone binding	4.07E-02
117	GO:0004518: nuclease activity	4.26E-02
118	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	4.46E-02
119	GO:0000156: phosphorelay response regulator activity	4.46E-02
120	GO:0016791: phosphatase activity	4.66E-02
121	GO:0016722: oxidoreductase activity, oxidizing metal ions	4.86E-02
122	GO:0008237: metallopeptidase activity	4.86E-02
123	GO:0005200: structural constituent of cytoskeleton	4.86E-02

Rank	GO Term	Adjusted P value
1	GO:0010240: plastid pyruvate dehydrogenase complex	0.00E+00
2	GO:0009515: granal stacked thylakoid	0.00E+00
3	GO:0044391: ribosomal subunit	0.00E+00
4	GO:0009507: chloroplast	2.16E-59
5	GO:0009535: chloroplast thylakoid membrane	8.12E-30
6	GO:0009570: chloroplast stroma	5.00E-28
7	GO:0009543: chloroplast thylakoid lumen	5.75E-25
8	GO:0009579: thylakoid	1.35E-24
9	GO:0009534: chloroplast thylakoid	6.53E-22
10	GO:0009941: chloroplast envelope	3.78E-20
11	GO:0031977: thylakoid lumen	8.19E-17
12	GO:0009654: photosystem II oxygen evolving complex	6.76E-09
13	GO:0005840: ribosome	1.62E-08
14	GO:0019898: extrinsic component of membrane	8.42E-08
15	GO:0030095: chloroplast photosystem II	9.63E-08
16	GO:0031969: chloroplast membrane	1.16E-05
17	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	3.15E-05
18	GO:0046658: anchored component of plasma membrane	1.98E-04
19	GO:0042651: thylakoid membrane	2.31E-04
20	GO:0048046: apoplast	3.06E-04
21	GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex	3.99E-04
22	GO:0009523: photosystem II	6.12E-04
23	GO:0031225: anchored component of membrane	7.24E-04
24	GO:0030093: chloroplast photosystem I	8.66E-04
25	GO:0010007: magnesium chelatase complex	1.40E-03
26	GO:0015630: microtubule cytoskeleton	2.03E-03
27	GO:0016021: integral component of membrane	3.89E-03
28	GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1)	4.32E-03
29	GO:0009533: chloroplast stromal thylakoid	6.15E-03
30	GO:0009706: chloroplast inner membrane	6.36E-03
31	GO:0009536: plastid	6.37E-03
32	GO:0010319: stromule	6.84E-03
33	GO:0010287: plastoglobule	7.91E-03
34	GO:0005811: lipid particle	8.21E-03
35	GO:0008180: COP9 signalosome	9.31E-03
36	GO:0015934: large ribosomal subunit	1.17E-02
37	GO:0016020: membrane	1.35E-02
38	GO:0032040: small-subunit processome	1.43E-02
39	GO:0005618: cell wall	1.47E-02
40	GO:0009508: plastid chromosome	1.56E-02
41	GO:0030076: light-harvesting complex	1.84E-02
42	GO:0015935: small ribosomal subunit	2.46E-02
43	GO:0009522: photosystem I	3.69E-02
44	GO:0005777: peroxisome	3.90E-02
45	GO:0005778: peroxisomal membrane	4.86E-02
46	GO:0009295: nucleoid	4.86E-02