co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT2G01170

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0009877: nodulation	0.00E+00
2	GO:0043171: peptide catabolic process	0.00E+00
3	GO:0010378: temperature compensation of the circadian clock	0.00E+00
4	GO:0030644: cellular chloride ion homeostasis	0.00E+00
5	GO:1903508: positive regulation of nucleic acid-templated transcription	0.00E+00
6	GO:1903428: positive regulation of reactive oxygen species biosynthetic process	0.00E+00
7	GO:0070584: mitochondrion morphogenesis	0.00E+00
8	GO:0071311: cellular response to acetate	0.00E+00
9	GO:1901401: regulation of tetrapyrrole metabolic process	0.00E+00
10	GO:0071260: cellular response to mechanical stimulus	0.00E+00
11	GO:0009768: photosynthesis, light harvesting in photosystem I	1.28E-19
12	GO:0018298: protein-chromophore linkage	9.93E-14
13	GO:0015979: photosynthesis	7.67E-12
14	GO:0007623: circadian rhythm	1.43E-08
15	GO:0009645: response to low light intensity stimulus	5.28E-08
16	GO:0010114: response to red light	5.28E-08
17	GO:0010218: response to far red light	3.68E-07
18	GO:0009637: response to blue light	5.73E-07
19	GO:0009416: response to light stimulus	1.61E-06
20	GO:0009644: response to high light intensity	1.62E-06
21	GO:0009409: response to cold	3.30E-06
22	GO:0009769: photosynthesis, light harvesting in photosystem II	5.75E-06
23	GO:0000380: alternative mRNA splicing, via spliceosome	9.88E-05
24	GO:0010119: regulation of stomatal movement	1.37E-04
25	GO:0080167: response to karrikin	1.99E-04
26	GO:0042542: response to hydrogen peroxide	2.32E-04
27	GO:0010196: nonphotochemical quenching	2.54E-04
28	GO:0032958: inositol phosphate biosynthetic process	3.11E-04
29	GO:0034472: snRNA 3'-end processing	3.11E-04
30	GO:0010496: intercellular transport	3.11E-04
31	GO:0010362: negative regulation of anion channel activity by blue light	3.11E-04
32	GO:1902884: positive regulation of response to oxidative stress	6.81E-04
33	GO:0030259: lipid glycosylation	6.81E-04
34	GO:0051170: nuclear import	6.81E-04
35	GO:0010155: regulation of proton transport	6.81E-04
36	GO:0006883: cellular sodium ion homeostasis	6.81E-04
37	GO:0090057: root radial pattern formation	6.81E-04
38	GO:0015995: chlorophyll biosynthetic process	8.25E-04
39	GO:0000160: phosphorelay signal transduction system	9.96E-04
40	GO:0006355: regulation of transcription, DNA-templated	1.08E-03
41	GO:0071230: cellular response to amino acid stimulus	1.10E-03
42	GO:0006598: polyamine catabolic process	1.10E-03
43	GO:1901562: response to paraquat	1.10E-03
44	GO:0090153: regulation of sphingolipid biosynthetic process	1.10E-03
45	GO:0042256: mature ribosome assembly	1.10E-03
46	GO:1902448: positive regulation of shade avoidance	1.10E-03
47	GO:0009737: response to abscisic acid	1.18E-03
48	GO:0009735: response to cytokinin	1.20E-03
49	GO:0030100: regulation of endocytosis	1.58E-03
50	GO:0031936: negative regulation of chromatin silencing	1.58E-03
51	GO:1901332: negative regulation of lateral root development	1.58E-03
52	GO:0009963: positive regulation of flavonoid biosynthetic process	1.58E-03
53	GO:0006020: inositol metabolic process	1.58E-03
54	GO:1901000: regulation of response to salt stress	1.58E-03
55	GO:0010601: positive regulation of auxin biosynthetic process	1.58E-03
56	GO:0044211: CTP salvage	1.58E-03
57	GO:0035556: intracellular signal transduction	1.60E-03
58	GO:0006874: cellular calcium ion homeostasis	1.66E-03
59	GO:0055114: oxidation-reduction process	1.68E-03
60	GO:0009414: response to water deprivation	1.72E-03
61	GO:0048511: rhythmic process	1.82E-03
62	GO:0008643: carbohydrate transport	1.91E-03
63	GO:0010017: red or far-red light signaling pathway	1.99E-03
64	GO:1901002: positive regulation of response to salt stress	2.12E-03
65	GO:0030104: water homeostasis	2.12E-03
66	GO:0010600: regulation of auxin biosynthetic process	2.12E-03
67	GO:0044206: UMP salvage	2.12E-03
68	GO:0000003: reproduction	2.12E-03
69	GO:0015743: malate transport	2.12E-03
70	GO:0009765: photosynthesis, light harvesting	2.12E-03
71	GO:2000306: positive regulation of photomorphogenesis	2.12E-03
72	GO:0070417: cellular response to cold	2.56E-03
73	GO:0043097: pyrimidine nucleoside salvage	2.71E-03
74	GO:0009904: chloroplast accumulation movement	2.71E-03
75	GO:0006461: protein complex assembly	2.71E-03
76	GO:0016123: xanthophyll biosynthetic process	2.71E-03
77	GO:0048578: positive regulation of long-day photoperiodism, flowering	2.71E-03
78	GO:0009658: chloroplast organization	3.09E-03
79	GO:0007165: signal transduction	3.19E-03
80	GO:0045962: positive regulation of development, heterochronic	3.35E-03
81	GO:0006206: pyrimidine nucleobase metabolic process	3.35E-03
82	GO:0000741: karyogamy	3.35E-03
83	GO:0009635: response to herbicide	3.35E-03
84	GO:0006970: response to osmotic stress	3.46E-03
85	GO:0010244: response to low fluence blue light stimulus by blue low-fluence system	4.03E-03
86	GO:0009903: chloroplast avoidance movement	4.03E-03
87	GO:0009861: jasmonic acid and ethylene-dependent systemic resistance	4.03E-03
88	GO:0000079: regulation of cyclin-dependent protein serine/threonine kinase activity	4.03E-03
89	GO:0071470: cellular response to osmotic stress	4.03E-03
90	GO:0010286: heat acclimation	4.73E-03
91	GO:0048437: floral organ development	4.76E-03
92	GO:0080111: DNA demethylation	4.76E-03
93	GO:0010038: response to metal ion	4.76E-03
94	GO:0010161: red light signaling pathway	4.76E-03
95	GO:1900056: negative regulation of leaf senescence	4.76E-03
96	GO:0044550: secondary metabolite biosynthetic process	4.87E-03
97	GO:0042255: ribosome assembly	5.53E-03
98	GO:0009415: response to water	5.53E-03
99	GO:0010078: maintenance of root meristem identity	5.53E-03
100	GO:0009704: de-etiolation	5.53E-03
101	GO:0032508: DNA duplex unwinding	5.53E-03
102	GO:0009061: anaerobic respiration	5.53E-03
103	GO:0010928: regulation of auxin mediated signaling pathway	5.53E-03
104	GO:0009788: negative regulation of abscisic acid-activated signaling pathway	5.62E-03
105	GO:0006351: transcription, DNA-templated	5.80E-03
106	GO:0007186: G-protein coupled receptor signaling pathway	6.33E-03
107	GO:0001510: RNA methylation	6.33E-03
108	GO:0010099: regulation of photomorphogenesis	6.33E-03
109	GO:0006075: (1->3)-beta-D-glucan biosynthetic process	6.33E-03
110	GO:0009827: plant-type cell wall modification	6.33E-03
111	GO:0009817: defense response to fungus, incompatible interaction	6.93E-03
112	GO:0090333: regulation of stomatal closure	7.19E-03
113	GO:0006811: ion transport	7.65E-03
114	GO:0009631: cold acclimation	8.02E-03
115	GO:0010043: response to zinc ion	8.02E-03
116	GO:0048354: mucilage biosynthetic process involved in seed coat development	8.07E-03
117	GO:0010380: regulation of chlorophyll biosynthetic process	8.07E-03
118	GO:0008356: asymmetric cell division	8.07E-03
119	GO:0009638: phototropism	8.07E-03
120	GO:0030042: actin filament depolymerization	8.07E-03
121	GO:0045087: innate immune response	8.80E-03
122	GO:0009970: cellular response to sulfate starvation	9.00E-03
123	GO:0055062: phosphate ion homeostasis	9.00E-03
124	GO:0006995: cellular response to nitrogen starvation	9.00E-03
125	GO:0009688: abscisic acid biosynthetic process	9.00E-03
126	GO:0009641: shade avoidance	9.00E-03
127	GO:0006949: syncytium formation	9.00E-03
128	GO:0010162: seed dormancy process	9.00E-03
129	GO:0009651: response to salt stress	9.76E-03
130	GO:0018119: peptidyl-cysteine S-nitrosylation	9.96E-03
131	GO:0030148: sphingolipid biosynthetic process	9.96E-03
132	GO:0046856: phosphatidylinositol dephosphorylation	9.96E-03
133	GO:0006816: calcium ion transport	9.96E-03
134	GO:0016925: protein sumoylation	1.10E-02
135	GO:0009640: photomorphogenesis	1.14E-02
136	GO:0032436: positive regulation of proteasomal ubiquitin-dependent protein catabolic process	1.20E-02
137	GO:0009785: blue light signaling pathway	1.20E-02
138	GO:0050826: response to freezing	1.20E-02
139	GO:0018107: peptidyl-threonine phosphorylation	1.20E-02
140	GO:0009718: anthocyanin-containing compound biosynthetic process	1.20E-02
141	GO:0009767: photosynthetic electron transport chain	1.20E-02
142	GO:0010207: photosystem II assembly	1.31E-02
143	GO:0007015: actin filament organization	1.31E-02
144	GO:0009266: response to temperature stimulus	1.31E-02
145	GO:0007030: Golgi organization	1.42E-02
146	GO:0019853: L-ascorbic acid biosynthetic process	1.42E-02
147	GO:0090351: seedling development	1.42E-02
148	GO:0009585: red, far-red light phototransduction	1.54E-02
149	GO:0006406: mRNA export from nucleus	1.65E-02
150	GO:0009723: response to ethylene	1.67E-02
151	GO:0016575: histone deacetylation	1.77E-02
152	GO:0010431: seed maturation	1.89E-02
153	GO:0009269: response to desiccation	1.89E-02
154	GO:0019748: secondary metabolic process	2.01E-02
155	GO:0071215: cellular response to abscisic acid stimulus	2.14E-02
156	GO:0006012: galactose metabolic process	2.14E-02
157	GO:0045492: xylan biosynthetic process	2.27E-02
158	GO:0019722: calcium-mediated signaling	2.27E-02
159	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	2.41E-02
160	GO:0034220: ion transmembrane transport	2.55E-02
161	GO:0010501: RNA secondary structure unwinding	2.55E-02
162	GO:0008360: regulation of cell shape	2.68E-02
163	GO:0010197: polar nucleus fusion	2.68E-02
164	GO:0010182: sugar mediated signaling pathway	2.68E-02
165	GO:0006814: sodium ion transport	2.83E-02
166	GO:0042752: regulation of circadian rhythm	2.83E-02
167	GO:0009058: biosynthetic process	2.89E-02
168	GO:0009556: microsporogenesis	2.97E-02
169	GO:0006629: lipid metabolic process	2.98E-02
170	GO:0009408: response to heat	2.98E-02
171	GO:0000302: response to reactive oxygen species	3.12E-02
172	GO:0032502: developmental process	3.27E-02
173	GO:1901657: glycosyl compound metabolic process	3.42E-02
174	GO:0010252: auxin homeostasis	3.58E-02
175	GO:0009828: plant-type cell wall loosening	3.58E-02
176	GO:0046686: response to cadmium ion	3.75E-02
177	GO:0010228: vegetative to reproductive phase transition of meristem	3.96E-02
178	GO:0016126: sterol biosynthetic process	4.05E-02
179	GO:0010029: regulation of seed germination	4.22E-02
180	GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process	4.23E-02
181	GO:0009739: response to gibberellin	4.23E-02
182	GO:0010468: regulation of gene expression	4.50E-02
183	GO:0048573: photoperiodism, flowering	4.55E-02
184	GO:0006950: response to stress	4.55E-02
185	GO:0016567: protein ubiquitination	4.77E-02
186	GO:0048481: plant ovule development	4.89E-02

Rank	GO Term	Adjusted P value
1	GO:0080082: esculin beta-glucosidase activity	0.00E+00
2	GO:0004567: beta-mannosidase activity	0.00E+00
3	GO:0015276: ligand-gated ion channel activity	0.00E+00
4	GO:0080081: 4-methylumbelliferyl-beta-D-glucopyranoside beta-glucosidase activity	0.00E+00
5	GO:0048529: magnesium-protoporphyrin IX monomethyl ester (oxidative) cyclase activity	0.00E+00
6	GO:0016428: tRNA (cytosine-5-)-methyltransferase activity	0.00E+00
7	GO:0047668: amygdalin beta-glucosidase activity	0.00E+00
8	GO:0050511: undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase activity	0.00E+00
9	GO:0019912: cyclin-dependent protein kinase activating kinase activity	0.00E+00
10	GO:0080083: beta-gentiobiose beta-glucosidase activity	0.00E+00
11	GO:0009540: zeaxanthin epoxidase [overall] activity	0.00E+00
12	GO:0047205: quinate O-hydroxycinnamoyltransferase activity	0.00E+00
13	GO:0030504: inorganic diphosphate transmembrane transporter activity	0.00E+00
14	GO:0010349: L-galactose dehydrogenase activity	0.00E+00
15	GO:0047172: shikimate O-hydroxycinnamoyltransferase activity	0.00E+00
16	GO:0031409: pigment binding	5.35E-18
17	GO:0016168: chlorophyll binding	3.07E-14
18	GO:0005515: protein binding	2.28E-05
19	GO:0005253: anion channel activity	6.26E-05
20	GO:0046872: metal ion binding	2.06E-04
21	GO:0008066: glutamate receptor activity	3.11E-04
22	GO:0052631: sphingolipid delta-8 desaturase activity	3.11E-04
23	GO:0000828: inositol hexakisphosphate kinase activity	3.11E-04
24	GO:0070006: metalloaminopeptidase activity	3.11E-04
25	GO:0008158: hedgehog receptor activity	3.11E-04
26	GO:0033857: diphosphoinositol-pentakisphosphate kinase activity	3.11E-04
27	GO:0000829: inositol heptakisphosphate kinase activity	3.11E-04
28	GO:0010013: N-1-naphthylphthalamic acid binding	3.11E-04
29	GO:0080079: cellobiose glucosidase activity	3.11E-04
30	GO:0047158: sinapoylglucose-sinapoylglucose O-sinapoyltransferase activity	6.81E-04
31	GO:0016630: protochlorophyllide reductase activity	6.81E-04
32	GO:0017150: tRNA dihydrouridine synthase activity	1.10E-03
33	GO:0004096: catalase activity	1.10E-03
34	GO:0046592: polyamine oxidase activity	1.10E-03
35	GO:0019948: SUMO activating enzyme activity	1.10E-03
36	GO:0004970: ionotropic glutamate receptor activity	1.22E-03
37	GO:0005217: intracellular ligand-gated ion channel activity	1.22E-03
38	GO:0009882: blue light photoreceptor activity	1.58E-03
39	GO:0004707: MAP kinase activity	1.82E-03
40	GO:0004506: squalene monooxygenase activity	2.12E-03
41	GO:0004930: G-protein coupled receptor activity	2.12E-03
42	GO:0042277: peptide binding	2.12E-03
43	GO:0004845: uracil phosphoribosyltransferase activity	2.12E-03
44	GO:0045300: acyl-[acyl-carrier-protein] desaturase activity	2.71E-03
45	GO:0016702: oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen	2.71E-03
46	GO:0015562: efflux transmembrane transporter activity	3.35E-03
47	GO:0000293: ferric-chelate reductase activity	3.35E-03
48	GO:0005247: voltage-gated chloride channel activity	3.35E-03
49	GO:0004629: phospholipase C activity	3.35E-03
50	GO:0004849: uridine kinase activity	4.03E-03
51	GO:0004435: phosphatidylinositol phospholipase C activity	4.03E-03
52	GO:0000156: phosphorelay response regulator activity	4.19E-03
53	GO:0015140: malate transmembrane transporter activity	4.76E-03
54	GO:0003700: transcription factor activity, sequence-specific DNA binding	5.20E-03
55	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	5.47E-03
56	GO:0004033: aldo-keto reductase (NADP) activity	5.53E-03
57	GO:0004525: ribonuclease III activity	5.53E-03
58	GO:0003677: DNA binding	5.59E-03
59	GO:0008353: RNA polymerase II carboxy-terminal domain kinase activity	6.33E-03
60	GO:0003843: 1,3-beta-D-glucan synthase activity	6.33E-03
61	GO:0032041: NAD-dependent histone deacetylase activity (H3-K14 specific)	6.33E-03
62	GO:0008270: zinc ion binding	6.38E-03
63	GO:0071949: FAD binding	7.19E-03
64	GO:0000989: transcription factor activity, transcription factor binding	7.19E-03
65	GO:0009815: 1-aminocyclopropane-1-carboxylate oxidase activity	7.19E-03
66	GO:0016308: 1-phosphatidylinositol-4-phosphate 5-kinase activity	9.00E-03
67	GO:0004177: aminopeptidase activity	9.96E-03
68	GO:0047372: acylglycerol lipase activity	9.96E-03
69	GO:0004439: phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity	1.10E-02
70	GO:0004565: beta-galactosidase activity	1.20E-02
71	GO:0004022: alcohol dehydrogenase (NAD) activity	1.20E-02
72	GO:0005315: inorganic phosphate transmembrane transporter activity	1.20E-02
73	GO:0000155: phosphorelay sensor kinase activity	1.20E-02
74	GO:0005262: calcium channel activity	1.20E-02
75	GO:0008131: primary amine oxidase activity	1.31E-02
76	GO:0031624: ubiquitin conjugating enzyme binding	1.31E-02
77	GO:0008168: methyltransferase activity	1.32E-02
78	GO:0003712: transcription cofactor activity	1.42E-02
79	GO:0004407: histone deacetylase activity	1.65E-02
80	GO:0005216: ion channel activity	1.77E-02
81	GO:0008324: cation transmembrane transporter activity	1.77E-02
82	GO:0004497: monooxygenase activity	1.83E-02
83	GO:0019706: protein-cysteine S-palmitoyltransferase activity	1.89E-02
84	GO:0061630: ubiquitin protein ligase activity	1.95E-02
85	GO:0016874: ligase activity	2.06E-02
86	GO:0003727: single-stranded RNA binding	2.27E-02
87	GO:0008514: organic anion transmembrane transporter activity	2.27E-02
88	GO:0016709: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen	2.52E-02
89	GO:0016301: kinase activity	2.58E-02
90	GO:0010181: FMN binding	2.83E-02
91	GO:0004672: protein kinase activity	3.41E-02
92	GO:0005351: sugar:proton symporter activity	3.70E-02
93	GO:0020037: heme binding	3.83E-02
94	GO:0102483: scopolin beta-glucosidase activity	4.55E-02

Rank	GO Term	Adjusted P value
1	GO:0009783: photosystem II antenna complex	0.00E+00
2	GO:0009522: photosystem I	1.20E-15
3	GO:0030076: light-harvesting complex	6.27E-14
4	GO:0010287: plastoglobule	3.90E-12
5	GO:0009534: chloroplast thylakoid	2.78E-11
6	GO:0009535: chloroplast thylakoid membrane	5.09E-11
7	GO:0009579: thylakoid	3.31E-10
8	GO:0009941: chloroplast envelope	3.11E-09
9	GO:0016021: integral component of membrane	5.92E-07
10	GO:0009523: photosystem II	1.01E-06
11	GO:0016020: membrane	1.05E-05
12	GO:0009517: PSII associated light-harvesting complex II	6.26E-05
13	GO:0009898: cytoplasmic side of plasma membrane	6.26E-05
14	GO:0009507: chloroplast	9.50E-05
15	GO:0042651: thylakoid membrane	1.38E-04
16	GO:0032586: protein storage vacuole membrane	2.12E-03
17	GO:0005798: Golgi-associated vesicle	3.35E-03
18	GO:0034707: chloride channel complex	3.35E-03
19	GO:0009986: cell surface	4.76E-03
20	GO:0009533: chloroplast stromal thylakoid	4.76E-03
21	GO:0009538: photosystem I reaction center	5.53E-03
22	GO:0000148: 1,3-beta-D-glucan synthase complex	6.33E-03
23	GO:0000326: protein storage vacuole	6.33E-03
24	GO:0000151: ubiquitin ligase complex	6.93E-03
25	GO:0031090: organelle membrane	7.19E-03
26	GO:0010494: cytoplasmic stress granule	7.19E-03
27	GO:0005886: plasma membrane	1.12E-02
28	GO:0005938: cell cortex	1.20E-02
29	GO:0030095: chloroplast photosystem II	1.31E-02
30	GO:0031966: mitochondrial membrane	1.43E-02
31	GO:0005769: early endosome	1.53E-02
32	GO:0009654: photosystem II oxygen evolving complex	1.77E-02
33	GO:0015629: actin cytoskeleton	2.14E-02
34	GO:0009706: chloroplast inner membrane	2.19E-02
35	GO:0005777: peroxisome	2.26E-02
36	GO:0005783: endoplasmic reticulum	2.33E-02
37	GO:0005773: vacuole	2.75E-02
38	GO:0019898: extrinsic component of membrane	2.97E-02
39	GO:0005618: cell wall	3.39E-02
40	GO:0000932: P-body	4.05E-02
41	GO:0005622: intracellular	4.28E-02
42	GO:0009707: chloroplast outer membrane	4.89E-02