Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT1G80380

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0006399: tRNA metabolic process0.00E+00
2GO:0006437: tyrosyl-tRNA aminoacylation0.00E+00
3GO:0070125: mitochondrial translational elongation0.00E+00
4GO:0006780: uroporphyrinogen III biosynthetic process0.00E+00
5GO:0051503: adenine nucleotide transport0.00E+00
6GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation0.00E+00
7GO:0061635: regulation of protein complex stability0.00E+00
8GO:0006428: isoleucyl-tRNA aminoacylation0.00E+00
9GO:0006642: triglyceride mobilization0.00E+00
10GO:0042407: cristae formation0.00E+00
11GO:0005996: monosaccharide metabolic process0.00E+00
12GO:0007638: mechanosensory behavior0.00E+00
13GO:0070272: proton-transporting ATP synthase complex biogenesis0.00E+00
14GO:0015979: photosynthesis6.33E-11
15GO:0009658: chloroplast organization3.25E-09
16GO:0010270: photosystem II oxygen evolving complex assembly3.71E-06
17GO:0006695: cholesterol biosynthetic process3.71E-06
18GO:0006418: tRNA aminoacylation for protein translation4.20E-06
19GO:0019253: reductive pentose-phosphate cycle5.88E-05
20GO:0010207: photosystem II assembly5.88E-05
21GO:0010020: chloroplast fission5.88E-05
22GO:0006457: protein folding1.16E-04
23GO:0042549: photosystem II stabilization1.23E-04
24GO:0010190: cytochrome b6f complex assembly1.23E-04
25GO:0016117: carotenoid biosynthetic process2.14E-04
26GO:0000413: protein peptidyl-prolyl isomerization2.39E-04
27GO:1904964: positive regulation of phytol biosynthetic process2.84E-04
28GO:0046166: glyceraldehyde-3-phosphate biosynthetic process2.84E-04
29GO:0006430: lysyl-tRNA aminoacylation2.84E-04
30GO:0016031: tRNA import into mitochondrion2.84E-04
31GO:1904966: positive regulation of vitamin E biosynthetic process2.84E-04
32GO:0006810: transport3.05E-04
33GO:0032544: plastid translation3.44E-04
34GO:0071482: cellular response to light stimulus3.44E-04
35GO:0009657: plastid organization3.44E-04
36GO:0045337: farnesyl diphosphate biosynthetic process4.15E-04
37GO:0033384: geranyl diphosphate biosynthetic process4.15E-04
38GO:0006779: porphyrin-containing compound biosynthetic process4.91E-04
39GO:0010027: thylakoid membrane organization5.68E-04
40GO:0006782: protoporphyrinogen IX biosynthetic process5.73E-04
41GO:0043039: tRNA aminoacylation6.25E-04
42GO:1902326: positive regulation of chlorophyll biosynthetic process6.25E-04
43GO:0006423: cysteinyl-tRNA aminoacylation6.25E-04
44GO:0018119: peptidyl-cysteine S-nitrosylation6.61E-04
45GO:0006816: calcium ion transport6.61E-04
46GO:0009773: photosynthetic electron transport in photosystem I6.61E-04
47GO:0009073: aromatic amino acid family biosynthetic process6.61E-04
48GO:0043085: positive regulation of catalytic activity6.61E-04
49GO:0006352: DNA-templated transcription, initiation6.61E-04
50GO:0006415: translational termination6.61E-04
51GO:0015995: chlorophyll biosynthetic process6.98E-04
52GO:0018298: protein-chromophore linkage7.94E-04
53GO:0048481: plant ovule development7.94E-04
54GO:0055114: oxidation-reduction process9.40E-04
55GO:0071492: cellular response to UV-A1.01E-03
56GO:0006696: ergosterol biosynthetic process1.01E-03
57GO:0032504: multicellular organism reproduction1.01E-03
58GO:0006954: inflammatory response1.01E-03
59GO:0019563: glycerol catabolic process1.01E-03
60GO:0006518: peptide metabolic process1.01E-03
61GO:0010581: regulation of starch biosynthetic process1.01E-03
62GO:0006433: prolyl-tRNA aminoacylation1.01E-03
63GO:0090351: seedling development1.07E-03
64GO:0019344: cysteine biosynthetic process1.32E-03
65GO:0016556: mRNA modification1.45E-03
66GO:0043572: plastid fission1.45E-03
67GO:2001141: regulation of RNA biosynthetic process1.45E-03
68GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly1.45E-03
69GO:0007231: osmosensory signaling pathway1.45E-03
70GO:0006241: CTP biosynthetic process1.45E-03
71GO:0046902: regulation of mitochondrial membrane permeability1.45E-03
72GO:0006424: glutamyl-tRNA aminoacylation1.45E-03
73GO:0006165: nucleoside diphosphate phosphorylation1.45E-03
74GO:0006228: UTP biosynthetic process1.45E-03
75GO:0009768: photosynthesis, light harvesting in photosystem I1.45E-03
76GO:0010088: phloem development1.45E-03
77GO:0061077: chaperone-mediated protein folding1.60E-03
78GO:0006730: one-carbon metabolic process1.75E-03
79GO:0010037: response to carbon dioxide1.94E-03
80GO:0006808: regulation of nitrogen utilization1.94E-03
81GO:0010109: regulation of photosynthesis1.94E-03
82GO:0015976: carbon utilization1.94E-03
83GO:0071486: cellular response to high light intensity1.94E-03
84GO:0009765: photosynthesis, light harvesting1.94E-03
85GO:0006085: acetyl-CoA biosynthetic process1.94E-03
86GO:0006183: GTP biosynthetic process1.94E-03
87GO:0045727: positive regulation of translation1.94E-03
88GO:2000122: negative regulation of stomatal complex development1.94E-03
89GO:0033500: carbohydrate homeostasis1.94E-03
90GO:0006546: glycine catabolic process1.94E-03
91GO:0071483: cellular response to blue light1.94E-03
92GO:0031365: N-terminal protein amino acid modification2.48E-03
93GO:0016123: xanthophyll biosynthetic process2.48E-03
94GO:0009247: glycolipid biosynthetic process2.48E-03
95GO:0032543: mitochondrial translation2.48E-03
96GO:0016120: carotene biosynthetic process2.48E-03
97GO:0006564: L-serine biosynthetic process2.48E-03
98GO:0006096: glycolytic process2.64E-03
99GO:0006555: methionine metabolic process3.06E-03
100GO:0016554: cytidine to uridine editing3.06E-03
101GO:0006828: manganese ion transport3.06E-03
102GO:0033365: protein localization to organelle3.06E-03
103GO:0009735: response to cytokinin3.55E-03
104GO:0010555: response to mannitol3.68E-03
105GO:0042372: phylloquinone biosynthetic process3.68E-03
106GO:0042026: protein refolding3.68E-03
107GO:0006458: 'de novo' protein folding3.68E-03
108GO:0009645: response to low light intensity stimulus4.34E-03
109GO:0006400: tRNA modification4.34E-03
110GO:0045454: cell redox homeostasis4.59E-03
111GO:0007155: cell adhesion5.03E-03
112GO:0009819: drought recovery5.03E-03
113GO:0009642: response to light intensity5.03E-03
114GO:0019375: galactolipid biosynthetic process5.03E-03
115GO:0017004: cytochrome complex assembly5.77E-03
116GO:0019430: removal of superoxide radicals5.77E-03
117GO:0006508: proteolysis5.78E-03
118GO:0009051: pentose-phosphate shunt, oxidative branch6.54E-03
119GO:0010206: photosystem II repair6.54E-03
120GO:0006783: heme biosynthetic process6.54E-03
121GO:0043067: regulation of programmed cell death7.35E-03
122GO:0035999: tetrahydrofolate interconversion7.35E-03
123GO:1900865: chloroplast RNA modification7.35E-03
124GO:0010380: regulation of chlorophyll biosynthetic process7.35E-03
125GO:0009637: response to blue light7.68E-03
126GO:0009409: response to cold8.04E-03
127GO:0045036: protein targeting to chloroplast8.19E-03
128GO:0006535: cysteine biosynthetic process from serine8.19E-03
129GO:0009793: embryo development ending in seed dormancy8.33E-03
130GO:0019684: photosynthesis, light reaction9.06E-03
131GO:0009089: lysine biosynthetic process via diaminopimelate9.06E-03
132GO:0000272: polysaccharide catabolic process9.06E-03
133GO:0010114: response to red light9.92E-03
134GO:0006790: sulfur compound metabolic process9.96E-03
135GO:0045037: protein import into chloroplast stroma9.96E-03
136GO:0046686: response to cadmium ion1.06E-02
137GO:0009644: response to high light intensity1.07E-02
138GO:0006006: glucose metabolic process1.09E-02
139GO:0006094: gluconeogenesis1.09E-02
140GO:0009767: photosynthetic electron transport chain1.09E-02
141GO:0042254: ribosome biogenesis1.20E-02
142GO:0070588: calcium ion transmembrane transport1.29E-02
143GO:0046854: phosphatidylinositol phosphorylation1.29E-02
144GO:0008299: isoprenoid biosynthetic process1.60E-02
145GO:0007017: microtubule-based process1.60E-02
146GO:0048316: seed development1.64E-02
147GO:0007005: mitochondrion organization1.83E-02
148GO:0080092: regulation of pollen tube growth1.83E-02
149GO:0016226: iron-sulfur cluster assembly1.83E-02
150GO:0009831: plant-type cell wall modification involved in multidimensional cell growth1.95E-02
151GO:0009411: response to UV1.95E-02
152GO:0042631: cellular response to water deprivation2.31E-02
153GO:0042335: cuticle development2.31E-02
154GO:0000271: polysaccharide biosynthetic process2.31E-02
155GO:0080022: primary root development2.31E-02
156GO:0010197: polar nucleus fusion2.44E-02
157GO:0045489: pectin biosynthetic process2.44E-02
158GO:0006662: glycerol ether metabolic process2.44E-02
159GO:0007018: microtubule-based movement2.57E-02
160GO:0006814: sodium ion transport2.57E-02
161GO:0009790: embryo development2.80E-02
162GO:0010583: response to cyclopentenone2.97E-02
163GO:0016032: viral process2.97E-02
164GO:0009828: plant-type cell wall loosening3.25E-02
165GO:0016126: sterol biosynthetic process3.68E-02
166GO:0042128: nitrate assimilation3.98E-02
167GO:0042742: defense response to bacterium4.25E-02
168GO:0009817: defense response to fungus, incompatible interaction4.45E-02
169GO:0010218: response to far red light4.76E-02
170GO:0010119: regulation of stomatal movement4.93E-02
RankGO TermAdjusted P value
1GO:0008756: o-succinylbenzoate-CoA ligase activity0.00E+00
2GO:0046905: phytoene synthase activity0.00E+00
3GO:0004852: uroporphyrinogen-III synthase activity0.00E+00
4GO:0008942: nitrite reductase [NAD(P)H] activity0.00E+00
5GO:0016767: geranylgeranyl-diphosphate geranylgeranyltransferase activity0.00E+00
6GO:0009974: zeinoxanthin epsilon hydroxylase activity0.00E+00
7GO:0050613: delta14-sterol reductase activity0.00E+00
8GO:0045435: lycopene epsilon cyclase activity0.00E+00
9GO:0004822: isoleucine-tRNA ligase activity0.00E+00
10GO:0003755: peptidyl-prolyl cis-trans isomerase activity2.03E-09
11GO:0004812: aminoacyl-tRNA ligase activity1.11E-05
12GO:0016149: translation release factor activity, codon specific2.99E-05
13GO:0001053: plastid sigma factor activity5.37E-05
14GO:0016987: sigma factor activity5.37E-05
15GO:0016168: chlorophyll binding5.54E-05
16GO:0005528: FK506 binding9.80E-05
17GO:0051920: peroxiredoxin activity1.69E-04
18GO:0016209: antioxidant activity2.80E-04
19GO:0004033: aldo-keto reductase (NADP) activity2.80E-04
20GO:0047381: dodecanoyl-[acyl-carrier-protein] hydrolase activity2.84E-04
21GO:0046912: transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer2.84E-04
22GO:0004824: lysine-tRNA ligase activity2.84E-04
23GO:0004807: triose-phosphate isomerase activity2.84E-04
24GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity2.84E-04
25GO:0004831: tyrosine-tRNA ligase activity2.84E-04
26GO:0004655: porphobilinogen synthase activity2.84E-04
27GO:0004489: methylenetetrahydrofolate reductase (NAD(P)H) activity2.84E-04
28GO:0051996: squalene synthase activity2.84E-04
29GO:0003747: translation release factor activity4.15E-04
30GO:0004337: geranyltranstransferase activity4.15E-04
31GO:0051082: unfolded protein binding5.66E-04
32GO:0008047: enzyme activator activity5.73E-04
33GO:0008967: phosphoglycolate phosphatase activity6.25E-04
34GO:0050017: L-3-cyanoalanine synthase activity6.25E-04
35GO:0004618: phosphoglycerate kinase activity6.25E-04
36GO:0010297: heteropolysaccharide binding6.25E-04
37GO:0004326: tetrahydrofolylpolyglutamate synthase activity6.25E-04
38GO:0004617: phosphoglycerate dehydrogenase activity6.25E-04
39GO:0004047: aminomethyltransferase activity6.25E-04
40GO:0046509: 1,2-diacylglycerol 3-beta-galactosyltransferase activity6.25E-04
41GO:0004817: cysteine-tRNA ligase activity6.25E-04
42GO:0016630: protochlorophyllide reductase activity6.25E-04
43GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase6.25E-04
44GO:0004310: farnesyl-diphosphate farnesyltransferase activity6.25E-04
45GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity6.25E-04
46GO:0004161: dimethylallyltranstransferase activity6.61E-04
47GO:0019843: rRNA binding7.98E-04
48GO:0031072: heat shock protein binding8.57E-04
49GO:0004222: metalloendopeptidase activity8.97E-04
50GO:0030267: glyoxylate reductase (NADP) activity1.01E-03
51GO:0016296: palmitoyl-[acyl-carrier-protein] hydrolase activity1.01E-03
52GO:0016295: myristoyl-[acyl-carrier-protein] hydrolase activity1.01E-03
53GO:0004827: proline-tRNA ligase activity1.01E-03
54GO:0017150: tRNA dihydrouridine synthase activity1.01E-03
55GO:0002161: aminoacyl-tRNA editing activity1.01E-03
56GO:0004148: dihydrolipoyl dehydrogenase activity1.01E-03
57GO:0031409: pigment binding1.19E-03
58GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor1.45E-03
59GO:0004550: nucleoside diphosphate kinase activity1.45E-03
60GO:0017057: 6-phosphogluconolactonase activity1.45E-03
61GO:0008097: 5S rRNA binding1.45E-03
62GO:0004365: glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity1.45E-03
63GO:0008508: bile acid:sodium symporter activity1.45E-03
64GO:0003878: ATP citrate synthase activity1.45E-03
65GO:0035250: UDP-galactosyltransferase activity1.45E-03
66GO:0022891: substrate-specific transmembrane transporter activity1.91E-03
67GO:0004659: prenyltransferase activity1.94E-03
68GO:0005319: lipid transporter activity1.94E-03
69GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor1.94E-03
70GO:0008574: ATP-dependent microtubule motor activity, plus-end-directed1.94E-03
71GO:0004045: aminoacyl-tRNA hydrolase activity1.94E-03
72GO:1990137: plant seed peroxidase activity1.94E-03
73GO:0043495: protein anchor1.94E-03
74GO:0005471: ATP:ADP antiporter activity2.48E-03
75GO:0003959: NADPH dehydrogenase activity2.48E-03
76GO:0016773: phosphotransferase activity, alcohol group as acceptor2.48E-03
77GO:0004791: thioredoxin-disulfide reductase activity2.80E-03
78GO:0050662: coenzyme binding2.80E-03
79GO:0016208: AMP binding3.06E-03
80GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor3.66E-03
81GO:0004124: cysteine synthase activity3.68E-03
82GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity3.68E-03
83GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity3.68E-03
84GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity3.68E-03
85GO:0102391: decanoate--CoA ligase activity3.68E-03
86GO:0008237: metallopeptidase activity4.14E-03
87GO:0004467: long-chain fatty acid-CoA ligase activity4.34E-03
88GO:0008235: metalloexopeptidase activity4.34E-03
89GO:0019899: enzyme binding4.34E-03
90GO:0008236: serine-type peptidase activity5.76E-03
91GO:0016740: transferase activity5.88E-03
92GO:0009055: electron carrier activity7.03E-03
93GO:0005384: manganese ion transmembrane transporter activity7.35E-03
94GO:0047617: acyl-CoA hydrolase activity7.35E-03
95GO:0046872: metal ion binding7.51E-03
96GO:0004177: aminopeptidase activity9.06E-03
97GO:0044183: protein binding involved in protein folding9.06E-03
98GO:0005089: Rho guanyl-nucleotide exchange factor activity9.06E-03
99GO:0000049: tRNA binding9.96E-03
100GO:0051537: 2 iron, 2 sulfur cluster binding1.07E-02
101GO:0043621: protein self-association1.07E-02
102GO:0004089: carbonate dehydratase activity1.09E-02
103GO:0015095: magnesium ion transmembrane transporter activity1.09E-02
104GO:0005262: calcium channel activity1.09E-02
105GO:0004565: beta-galactosidase activity1.09E-02
106GO:0015266: protein channel activity1.09E-02
107GO:0051287: NAD binding1.20E-02
108GO:0005509: calcium ion binding1.23E-02
109GO:0003899: DNA-directed 5'-3' RNA polymerase activity1.34E-02
110GO:0051536: iron-sulfur cluster binding1.50E-02
111GO:0008324: cation transmembrane transporter activity1.60E-02
112GO:0004176: ATP-dependent peptidase activity1.72E-02
113GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity1.83E-02
114GO:0042803: protein homodimerization activity2.05E-02
115GO:0003756: protein disulfide isomerase activity2.07E-02
116GO:0047134: protein-disulfide reductase activity2.19E-02
117GO:0016491: oxidoreductase activity2.26E-02
118GO:0048038: quinone binding2.83E-02
119GO:0008483: transaminase activity3.39E-02
120GO:0005200: structural constituent of cytoskeleton3.39E-02
121GO:0016597: amino acid binding3.54E-02
122GO:0042802: identical protein binding4.19E-02
123GO:0000982: transcription factor activity, RNA polymerase II core promoter proximal region sequence-specific binding4.29E-02
124GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity4.45E-02
125GO:0005524: ATP binding4.70E-02
126GO:0003723: RNA binding4.70E-02
127GO:0003824: catalytic activity4.85E-02
RankGO TermAdjusted P value
1GO:0009571: proplastid stroma0.00E+00
2GO:0009575: chromoplast stroma0.00E+00
3GO:0009507: chloroplast1.08E-74
4GO:0009941: chloroplast envelope2.13E-34
5GO:0009570: chloroplast stroma5.80E-34
6GO:0009535: chloroplast thylakoid membrane2.77E-31
7GO:0009543: chloroplast thylakoid lumen3.27E-20
8GO:0009579: thylakoid1.40E-16
9GO:0031977: thylakoid lumen2.00E-11
10GO:0009534: chloroplast thylakoid2.11E-08
11GO:0009654: photosystem II oxygen evolving complex8.71E-08
12GO:0031969: chloroplast membrane1.86E-06
13GO:0009706: chloroplast inner membrane6.11E-06
14GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)1.39E-05
15GO:0019898: extrinsic component of membrane2.07E-05
16GO:0010319: stromule3.96E-05
17GO:0030095: chloroplast photosystem II5.88E-05
18GO:0010287: plastoglobule1.08E-04
19GO:0009536: plastid1.80E-04
20GO:0009344: nitrite reductase complex [NAD(P)H]2.84E-04
21GO:0009782: photosystem I antenna complex2.84E-04
22GO:0043190: ATP-binding cassette (ABC) transporter complex2.84E-04
23GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex2.84E-04
24GO:0017101: aminoacyl-tRNA synthetase multienzyme complex2.84E-04
25GO:0009523: photosystem II3.21E-04
26GO:0000427: plastid-encoded plastid RNA polymerase complex6.25E-04
27GO:0030076: light-harvesting complex1.07E-03
28GO:0042651: thylakoid membrane1.45E-03
29GO:0009346: citrate lyase complex1.45E-03
30GO:0009532: plastid stroma1.60E-03
31GO:0005874: microtubule3.31E-03
32GO:0005778: peroxisomal membrane4.14E-03
33GO:0009533: chloroplast stromal thylakoid4.34E-03
34GO:0005840: ribosome4.87E-03
35GO:0009539: photosystem II reaction center5.77E-03
36GO:0005811: lipid particle5.77E-03
37GO:0045298: tubulin complex6.54E-03
38GO:0016324: apical plasma membrane8.19E-03
39GO:0048046: apoplast8.57E-03
40GO:0009508: plastid chromosome1.09E-02
41GO:0030176: integral component of endoplasmic reticulum membrane1.29E-02
42GO:0015935: small ribosomal subunit1.72E-02
43GO:0005744: mitochondrial inner membrane presequence translocase complex2.07E-02
44GO:0005871: kinesin complex2.19E-02
45GO:0005623: cell2.46E-02
46GO:0009522: photosystem I2.57E-02
47GO:0005739: mitochondrion2.86E-02
48GO:0005759: mitochondrial matrix3.01E-02
49GO:0009295: nucleoid3.39E-02
50GO:0030529: intracellular ribonucleoprotein complex3.68E-02
51GO:0046658: anchored component of plasma membrane4.37E-02
52GO:0009707: chloroplast outer membrane4.45E-02
Gene type



Gene DE type