GO Enrichment Analysis of Co-expressed Genes with
AT1G80030
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0006399: tRNA metabolic process | 0.00E+00 |
| 2 | GO:0006437: tyrosyl-tRNA aminoacylation | 0.00E+00 |
| 3 | GO:0070125: mitochondrial translational elongation | 0.00E+00 |
| 4 | GO:0002184: cytoplasmic translational termination | 0.00E+00 |
| 5 | GO:0061635: regulation of protein complex stability | 0.00E+00 |
| 6 | GO:0006428: isoleucyl-tRNA aminoacylation | 0.00E+00 |
| 7 | GO:0006642: triglyceride mobilization | 0.00E+00 |
| 8 | GO:0042407: cristae formation | 0.00E+00 |
| 9 | GO:0035970: peptidyl-threonine dephosphorylation | 0.00E+00 |
| 10 | GO:0070272: proton-transporting ATP synthase complex biogenesis | 0.00E+00 |
| 11 | GO:0009658: chloroplast organization | 7.75E-10 |
| 12 | GO:0015979: photosynthesis | 7.59E-08 |
| 13 | GO:0006418: tRNA aminoacylation for protein translation | 5.16E-07 |
| 14 | GO:0071482: cellular response to light stimulus | 1.93E-06 |
| 15 | GO:0010020: chloroplast fission | 1.29E-05 |
| 16 | GO:0042549: photosystem II stabilization | 4.18E-05 |
| 17 | GO:0016117: carotenoid biosynthetic process | 5.38E-05 |
| 18 | GO:0032544: plastid translation | 1.27E-04 |
| 19 | GO:0009657: plastid organization | 1.27E-04 |
| 20 | GO:1904966: positive regulation of vitamin E biosynthetic process | 1.46E-04 |
| 21 | GO:1904964: positive regulation of phytol biosynthetic process | 1.46E-04 |
| 22 | GO:0042371: vitamin K biosynthetic process | 1.46E-04 |
| 23 | GO:0006430: lysyl-tRNA aminoacylation | 1.46E-04 |
| 24 | GO:0046166: glyceraldehyde-3-phosphate biosynthetic process | 1.46E-04 |
| 25 | GO:0010027: thylakoid membrane organization | 1.61E-04 |
| 26 | GO:0018298: protein-chromophore linkage | 2.33E-04 |
| 27 | GO:0048481: plant ovule development | 2.33E-04 |
| 28 | GO:0009073: aromatic amino acid family biosynthetic process | 2.59E-04 |
| 29 | GO:0006352: DNA-templated transcription, initiation | 2.59E-04 |
| 30 | GO:0006415: translational termination | 2.59E-04 |
| 31 | GO:0006568: tryptophan metabolic process | 3.33E-04 |
| 32 | GO:0010270: photosystem II oxygen evolving complex assembly | 3.33E-04 |
| 33 | GO:0043039: tRNA aminoacylation | 3.33E-04 |
| 34 | GO:1902326: positive regulation of chlorophyll biosynthetic process | 3.33E-04 |
| 35 | GO:0034755: iron ion transmembrane transport | 3.33E-04 |
| 36 | GO:0006423: cysteinyl-tRNA aminoacylation | 3.33E-04 |
| 37 | GO:0006094: gluconeogenesis | 3.41E-04 |
| 38 | GO:0010207: photosystem II assembly | 3.85E-04 |
| 39 | GO:0090351: seedling development | 4.32E-04 |
| 40 | GO:0006954: inflammatory response | 5.47E-04 |
| 41 | GO:0019563: glycerol catabolic process | 5.47E-04 |
| 42 | GO:0006433: prolyl-tRNA aminoacylation | 5.47E-04 |
| 43 | GO:0006696: ergosterol biosynthetic process | 5.47E-04 |
| 44 | GO:0032504: multicellular organism reproduction | 5.47E-04 |
| 45 | GO:0010581: regulation of starch biosynthetic process | 5.47E-04 |
| 46 | GO:0009768: photosynthesis, light harvesting in photosystem I | 5.87E-04 |
| 47 | GO:0043572: plastid fission | 7.83E-04 |
| 48 | GO:2001141: regulation of RNA biosynthetic process | 7.83E-04 |
| 49 | GO:0010088: phloem development | 7.83E-04 |
| 50 | GO:0016556: mRNA modification | 7.83E-04 |
| 51 | GO:0042991: transcription factor import into nucleus | 1.04E-03 |
| 52 | GO:0071483: cellular response to blue light | 1.04E-03 |
| 53 | GO:0006808: regulation of nitrogen utilization | 1.04E-03 |
| 54 | GO:0010109: regulation of photosynthesis | 1.04E-03 |
| 55 | GO:0009765: photosynthesis, light harvesting | 1.04E-03 |
| 56 | GO:0006085: acetyl-CoA biosynthetic process | 1.04E-03 |
| 57 | GO:0045454: cell redox homeostasis | 1.08E-03 |
| 58 | GO:0006564: L-serine biosynthetic process | 1.31E-03 |
| 59 | GO:0031365: N-terminal protein amino acid modification | 1.31E-03 |
| 60 | GO:0016123: xanthophyll biosynthetic process | 1.31E-03 |
| 61 | GO:0016120: carotene biosynthetic process | 1.31E-03 |
| 62 | GO:0010190: cytochrome b6f complex assembly | 1.61E-03 |
| 63 | GO:0000470: maturation of LSU-rRNA | 1.61E-03 |
| 64 | GO:0016554: cytidine to uridine editing | 1.61E-03 |
| 65 | GO:0006828: manganese ion transport | 1.61E-03 |
| 66 | GO:0006508: proteolysis | 1.89E-03 |
| 67 | GO:0009854: oxidative photosynthetic carbon pathway | 1.93E-03 |
| 68 | GO:0015995: chlorophyll biosynthetic process | 2.13E-03 |
| 69 | GO:0009645: response to low light intensity stimulus | 2.27E-03 |
| 70 | GO:0006400: tRNA modification | 2.27E-03 |
| 71 | GO:0010196: nonphotochemical quenching | 2.27E-03 |
| 72 | GO:0048564: photosystem I assembly | 2.63E-03 |
| 73 | GO:0009637: response to blue light | 2.98E-03 |
| 74 | GO:0009853: photorespiration | 2.98E-03 |
| 75 | GO:0017004: cytochrome complex assembly | 3.00E-03 |
| 76 | GO:0019430: removal of superoxide radicals | 3.00E-03 |
| 77 | GO:0006098: pentose-phosphate shunt | 3.40E-03 |
| 78 | GO:0043067: regulation of programmed cell death | 3.81E-03 |
| 79 | GO:1900865: chloroplast RNA modification | 3.81E-03 |
| 80 | GO:0010380: regulation of chlorophyll biosynthetic process | 3.81E-03 |
| 81 | GO:0010114: response to red light | 3.83E-03 |
| 82 | GO:0006535: cysteine biosynthetic process from serine | 4.23E-03 |
| 83 | GO:0045036: protein targeting to chloroplast | 4.23E-03 |
| 84 | GO:0043085: positive regulation of catalytic activity | 4.67E-03 |
| 85 | GO:0006879: cellular iron ion homeostasis | 4.67E-03 |
| 86 | GO:0006816: calcium ion transport | 4.67E-03 |
| 87 | GO:0009773: photosynthetic electron transport in photosystem I | 4.67E-03 |
| 88 | GO:0006457: protein folding | 5.21E-03 |
| 89 | GO:0006096: glycolytic process | 6.08E-03 |
| 90 | GO:0019253: reductive pentose-phosphate cycle | 6.09E-03 |
| 91 | GO:0019344: cysteine biosynthetic process | 7.63E-03 |
| 92 | GO:0007010: cytoskeleton organization | 7.63E-03 |
| 93 | GO:0061077: chaperone-mediated protein folding | 8.73E-03 |
| 94 | GO:0006730: one-carbon metabolic process | 9.30E-03 |
| 95 | GO:0016226: iron-sulfur cluster assembly | 9.30E-03 |
| 96 | GO:0080022: primary root development | 1.17E-02 |
| 97 | GO:0000413: protein peptidyl-prolyl isomerization | 1.17E-02 |
| 98 | GO:0010197: polar nucleus fusion | 1.24E-02 |
| 99 | GO:0007018: microtubule-based movement | 1.30E-02 |
| 100 | GO:0006814: sodium ion transport | 1.30E-02 |
| 101 | GO:0048825: cotyledon development | 1.37E-02 |
| 102 | GO:0016032: viral process | 1.50E-02 |
| 103 | GO:0006810: transport | 1.83E-02 |
| 104 | GO:0001666: response to hypoxia | 1.86E-02 |
| 105 | GO:0042128: nitrate assimilation | 2.01E-02 |
| 106 | GO:0042254: ribosome biogenesis | 2.01E-02 |
| 107 | GO:0016311: dephosphorylation | 2.17E-02 |
| 108 | GO:0009817: defense response to fungus, incompatible interaction | 2.25E-02 |
| 109 | GO:0010218: response to far red light | 2.41E-02 |
| 110 | GO:0055114: oxidation-reduction process | 2.66E-02 |
| 111 | GO:0006839: mitochondrial transport | 2.92E-02 |
| 112 | GO:0051707: response to other organism | 3.19E-02 |
| 113 | GO:0009644: response to high light intensity | 3.37E-02 |
| 114 | GO:0006855: drug transmembrane transport | 3.56E-02 |
| 115 | GO:0009793: embryo development ending in seed dormancy | 3.57E-02 |
| 116 | GO:0042742: defense response to bacterium | 3.75E-02 |
| 117 | GO:0009736: cytokinin-activated signaling pathway | 3.94E-02 |
| 118 | GO:0008152: metabolic process | 3.96E-02 |
| 119 | GO:0051603: proteolysis involved in cellular protein catabolic process | 4.04E-02 |
| 120 | GO:0048316: seed development | 4.54E-02 |
| 121 | GO:0009553: embryo sac development | 4.96E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0008887: glycerate kinase activity | 0.00E+00 |
| 2 | GO:0046408: chlorophyll synthetase activity | 0.00E+00 |
| 3 | GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity | 0.00E+00 |
| 4 | GO:0008942: nitrite reductase [NAD(P)H] activity | 0.00E+00 |
| 5 | GO:0016767: geranylgeranyl-diphosphate geranylgeranyltransferase activity | 0.00E+00 |
| 6 | GO:0009974: zeinoxanthin epsilon hydroxylase activity | 0.00E+00 |
| 7 | GO:0045435: lycopene epsilon cyclase activity | 0.00E+00 |
| 8 | GO:0004822: isoleucine-tRNA ligase activity | 0.00E+00 |
| 9 | GO:0046905: phytoene synthase activity | 0.00E+00 |
| 10 | GO:0004812: aminoacyl-tRNA ligase activity | 1.43E-06 |
| 11 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 2.23E-06 |
| 12 | GO:0016149: translation release factor activity, codon specific | 9.15E-06 |
| 13 | GO:0001053: plastid sigma factor activity | 1.71E-05 |
| 14 | GO:0016987: sigma factor activity | 1.71E-05 |
| 15 | GO:0051920: peroxiredoxin activity | 5.87E-05 |
| 16 | GO:0016209: antioxidant activity | 1.02E-04 |
| 17 | GO:0008237: metallopeptidase activity | 1.36E-04 |
| 18 | GO:0046912: transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer | 1.46E-04 |
| 19 | GO:0004425: indole-3-glycerol-phosphate synthase activity | 1.46E-04 |
| 20 | GO:0004824: lysine-tRNA ligase activity | 1.46E-04 |
| 21 | GO:0004807: triose-phosphate isomerase activity | 1.46E-04 |
| 22 | GO:0004831: tyrosine-tRNA ligase activity | 1.46E-04 |
| 23 | GO:0051996: squalene synthase activity | 1.46E-04 |
| 24 | GO:0003747: translation release factor activity | 1.56E-04 |
| 25 | GO:0016168: chlorophyll binding | 1.74E-04 |
| 26 | GO:0004310: farnesyl-diphosphate farnesyltransferase activity | 3.33E-04 |
| 27 | GO:0050017: L-3-cyanoalanine synthase activity | 3.33E-04 |
| 28 | GO:0004326: tetrahydrofolylpolyglutamate synthase activity | 3.33E-04 |
| 29 | GO:0004617: phosphoglycerate dehydrogenase activity | 3.33E-04 |
| 30 | GO:0004817: cysteine-tRNA ligase activity | 3.33E-04 |
| 31 | GO:0016630: protochlorophyllide reductase activity | 3.33E-04 |
| 32 | GO:0031409: pigment binding | 4.81E-04 |
| 33 | GO:0005528: FK506 binding | 5.33E-04 |
| 34 | GO:0030267: glyoxylate reductase (NADP) activity | 5.47E-04 |
| 35 | GO:0004827: proline-tRNA ligase activity | 5.47E-04 |
| 36 | GO:0017150: tRNA dihydrouridine synthase activity | 5.47E-04 |
| 37 | GO:0002161: aminoacyl-tRNA editing activity | 5.47E-04 |
| 38 | GO:0004148: dihydrolipoyl dehydrogenase activity | 5.47E-04 |
| 39 | GO:0004176: ATP-dependent peptidase activity | 6.43E-04 |
| 40 | GO:0043023: ribosomal large subunit binding | 7.83E-04 |
| 41 | GO:0008097: 5S rRNA binding | 7.83E-04 |
| 42 | GO:0008508: bile acid:sodium symporter activity | 7.83E-04 |
| 43 | GO:0003878: ATP citrate synthase activity | 7.83E-04 |
| 44 | GO:0004659: prenyltransferase activity | 1.04E-03 |
| 45 | GO:0008574: ATP-dependent microtubule motor activity, plus-end-directed | 1.04E-03 |
| 46 | GO:0043495: protein anchor | 1.04E-03 |
| 47 | GO:0016773: phosphotransferase activity, alcohol group as acceptor | 1.31E-03 |
| 48 | GO:0003959: NADPH dehydrogenase activity | 1.31E-03 |
| 49 | GO:0004332: fructose-bisphosphate aldolase activity | 1.61E-03 |
| 50 | GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity | 1.93E-03 |
| 51 | GO:0004124: cysteine synthase activity | 1.93E-03 |
| 52 | GO:0019899: enzyme binding | 2.27E-03 |
| 53 | GO:0008235: metalloexopeptidase activity | 2.27E-03 |
| 54 | GO:0004222: metalloendopeptidase activity | 2.60E-03 |
| 55 | GO:0004033: aldo-keto reductase (NADP) activity | 2.63E-03 |
| 56 | GO:0042802: identical protein binding | 2.71E-03 |
| 57 | GO:0005381: iron ion transmembrane transporter activity | 3.81E-03 |
| 58 | GO:0005384: manganese ion transmembrane transporter activity | 3.81E-03 |
| 59 | GO:0051537: 2 iron, 2 sulfur cluster binding | 4.14E-03 |
| 60 | GO:0008047: enzyme activator activity | 4.23E-03 |
| 61 | GO:0004177: aminopeptidase activity | 4.67E-03 |
| 62 | GO:0015386: potassium:proton antiporter activity | 4.67E-03 |
| 63 | GO:0000049: tRNA binding | 5.13E-03 |
| 64 | GO:0003899: DNA-directed 5'-3' RNA polymerase activity | 5.15E-03 |
| 65 | GO:0015095: magnesium ion transmembrane transporter activity | 5.60E-03 |
| 66 | GO:0042803: protein homodimerization activity | 6.08E-03 |
| 67 | GO:0051536: iron-sulfur cluster binding | 7.63E-03 |
| 68 | GO:0015079: potassium ion transmembrane transporter activity | 8.18E-03 |
| 69 | GO:0019843: rRNA binding | 9.17E-03 |
| 70 | GO:0046872: metal ion binding | 9.57E-03 |
| 71 | GO:0022891: substrate-specific transmembrane transporter activity | 9.89E-03 |
| 72 | GO:0050662: coenzyme binding | 1.30E-02 |
| 73 | GO:0004791: thioredoxin-disulfide reductase activity | 1.30E-02 |
| 74 | GO:0016887: ATPase activity | 1.31E-02 |
| 75 | GO:0008017: microtubule binding | 1.33E-02 |
| 76 | GO:0003723: RNA binding | 1.41E-02 |
| 77 | GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor | 1.57E-02 |
| 78 | GO:0016597: amino acid binding | 1.79E-02 |
| 79 | GO:0003729: mRNA binding | 1.87E-02 |
| 80 | GO:0004601: peroxidase activity | 1.97E-02 |
| 81 | GO:0004721: phosphoprotein phosphatase activity | 2.09E-02 |
| 82 | GO:0008236: serine-type peptidase activity | 2.17E-02 |
| 83 | GO:0000982: transcription factor activity, RNA polymerase II core promoter proximal region sequence-specific binding | 2.17E-02 |
| 84 | GO:0015238: drug transmembrane transporter activity | 2.33E-02 |
| 85 | GO:0003746: translation elongation factor activity | 2.66E-02 |
| 86 | GO:0052689: carboxylic ester hydrolase activity | 2.70E-02 |
| 87 | GO:0003993: acid phosphatase activity | 2.75E-02 |
| 88 | GO:0000987: core promoter proximal region sequence-specific DNA binding | 2.75E-02 |
| 89 | GO:0051539: 4 iron, 4 sulfur cluster binding | 2.92E-02 |
| 90 | GO:0004185: serine-type carboxypeptidase activity | 3.19E-02 |
| 91 | GO:0043621: protein self-association | 3.37E-02 |
| 92 | GO:0005509: calcium ion binding | 3.39E-02 |
| 93 | GO:0005198: structural molecule activity | 3.47E-02 |
| 94 | GO:0051287: NAD binding | 3.65E-02 |
| 95 | GO:0009055: electron carrier activity | 3.86E-02 |
| 96 | GO:0004519: endonuclease activity | 3.91E-02 |
| 97 | GO:0005215: transporter activity | 4.24E-02 |
| 98 | GO:0003777: microtubule motor activity | 4.24E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0009507: chloroplast | 1.02E-48 |
| 2 | GO:0009570: chloroplast stroma | 1.77E-23 |
| 3 | GO:0009941: chloroplast envelope | 2.00E-20 |
| 4 | GO:0009535: chloroplast thylakoid membrane | 1.78E-16 |
| 5 | GO:0009543: chloroplast thylakoid lumen | 1.25E-14 |
| 6 | GO:0009579: thylakoid | 8.25E-11 |
| 7 | GO:0031977: thylakoid lumen | 7.51E-10 |
| 8 | GO:0031969: chloroplast membrane | 4.48E-08 |
| 9 | GO:0009534: chloroplast thylakoid | 3.78E-06 |
| 10 | GO:0042651: thylakoid membrane | 2.65E-05 |
| 11 | GO:0009654: photosystem II oxygen evolving complex | 2.65E-05 |
| 12 | GO:0019898: extrinsic component of membrane | 8.48E-05 |
| 13 | GO:0009782: photosystem I antenna complex | 1.46E-04 |
| 14 | GO:0017101: aminoacyl-tRNA synthetase multienzyme complex | 1.46E-04 |
| 15 | GO:0010287: plastoglobule | 1.60E-04 |
| 16 | GO:0030095: chloroplast photosystem II | 3.85E-04 |
| 17 | GO:0030076: light-harvesting complex | 4.32E-04 |
| 18 | GO:0009532: plastid stroma | 6.43E-04 |
| 19 | GO:0009346: citrate lyase complex | 7.83E-04 |
| 20 | GO:0009706: chloroplast inner membrane | 1.01E-03 |
| 21 | GO:0009523: photosystem II | 1.19E-03 |
| 22 | GO:0009533: chloroplast stromal thylakoid | 2.27E-03 |
| 23 | GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone) | 3.40E-03 |
| 24 | GO:0009536: plastid | 3.79E-03 |
| 25 | GO:0005874: microtubule | 4.37E-03 |
| 26 | GO:0005840: ribosome | 1.10E-02 |
| 27 | GO:0005871: kinesin complex | 1.11E-02 |
| 28 | GO:0005759: mitochondrial matrix | 1.15E-02 |
| 29 | GO:0009522: photosystem I | 1.30E-02 |
| 30 | GO:0010319: stromule | 1.72E-02 |
| 31 | GO:0005739: mitochondrion | 2.10E-02 |
| 32 | GO:0016020: membrane | 2.83E-02 |