co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G78630

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0002184: cytoplasmic translational termination	0.00E+00
2	GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate	0.00E+00
3	GO:0090071: negative regulation of ribosome biogenesis	0.00E+00
4	GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation	0.00E+00
5	GO:0033494: ferulate metabolic process	0.00E+00
6	GO:0006428: isoleucyl-tRNA aminoacylation	0.00E+00
7	GO:0016553: base conversion or substitution editing	0.00E+00
8	GO:0015805: S-adenosyl-L-methionine transport	0.00E+00
9	GO:0042493: response to drug	0.00E+00
10	GO:0042371: vitamin K biosynthetic process	0.00E+00
11	GO:0006399: tRNA metabolic process	0.00E+00
12	GO:0006412: translation	7.87E-19
13	GO:0032544: plastid translation	1.74E-13
14	GO:0015979: photosynthesis	5.40E-13
15	GO:0042254: ribosome biogenesis	1.78E-11
16	GO:0010027: thylakoid membrane organization	1.64E-08
17	GO:0015995: chlorophyll biosynthetic process	3.06E-08
18	GO:0009658: chloroplast organization	5.91E-08
19	GO:0009735: response to cytokinin	1.26E-07
20	GO:0010196: nonphotochemical quenching	1.27E-05
21	GO:0090391: granum assembly	2.78E-05
22	GO:0009773: photosynthetic electron transport in photosystem I	7.90E-05
23	GO:0015976: carbon utilization	1.06E-04
24	GO:0042742: defense response to bacterium	1.65E-04
25	GO:0042372: phylloquinone biosynthetic process	3.15E-04
26	GO:1901259: chloroplast rRNA processing	3.15E-04
27	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	3.81E-04
28	GO:0009772: photosynthetic electron transport in photosystem II	4.06E-04
29	GO:0071588: hydrogen peroxide mediated signaling pathway	4.26E-04
30	GO:0010729: positive regulation of hydrogen peroxide biosynthetic process	4.26E-04
31	GO:0060627: regulation of vesicle-mediated transport	4.26E-04
32	GO:0043489: RNA stabilization	4.26E-04
33	GO:1904966: positive regulation of vitamin E biosynthetic process	4.26E-04
34	GO:1904964: positive regulation of phytol biosynthetic process	4.26E-04
35	GO:0006353: DNA-templated transcription, termination	5.08E-04
36	GO:0000413: protein peptidyl-prolyl isomerization	5.23E-04
37	GO:0045454: cell redox homeostasis	7.74E-04
38	GO:0006779: porphyrin-containing compound biosynthetic process	8.75E-04
39	GO:0006568: tryptophan metabolic process	9.21E-04
40	GO:0010024: phytochromobilin biosynthetic process	9.21E-04
41	GO:1902326: positive regulation of chlorophyll biosynthetic process	9.21E-04
42	GO:0034755: iron ion transmembrane transport	9.21E-04
43	GO:0001736: establishment of planar polarity	9.21E-04
44	GO:0006869: lipid transport	9.29E-04
45	GO:0009828: plant-type cell wall loosening	9.59E-04
46	GO:0006949: syncytium formation	1.02E-03
47	GO:0006782: protoporphyrinogen IX biosynthetic process	1.02E-03
48	GO:0018119: peptidyl-cysteine S-nitrosylation	1.17E-03
49	GO:0006954: inflammatory response	1.50E-03
50	GO:0006518: peptide metabolic process	1.50E-03
51	GO:0006788: heme oxidation	1.50E-03
52	GO:0006617: SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition	1.50E-03
53	GO:0009817: defense response to fungus, incompatible interaction	1.67E-03
54	GO:0010143: cutin biosynthetic process	1.72E-03
55	GO:0010207: photosystem II assembly	1.72E-03
56	GO:0051085: chaperone mediated protein folding requiring cofactor	2.17E-03
57	GO:0010239: chloroplast mRNA processing	2.17E-03
58	GO:0006241: CTP biosynthetic process	2.17E-03
59	GO:0019048: modulation by virus of host morphology or physiology	2.17E-03
60	GO:0009650: UV protection	2.17E-03
61	GO:0006424: glutamyl-tRNA aminoacylation	2.17E-03
62	GO:0006165: nucleoside diphosphate phosphorylation	2.17E-03
63	GO:0046739: transport of virus in multicellular host	2.17E-03
64	GO:1901332: negative regulation of lateral root development	2.17E-03
65	GO:0006228: UTP biosynthetic process	2.17E-03
66	GO:0031048: chromatin silencing by small RNA	2.17E-03
67	GO:0010088: phloem development	2.17E-03
68	GO:0006986: response to unfolded protein	2.17E-03
69	GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis	2.17E-03
70	GO:2001141: regulation of RNA biosynthetic process	2.17E-03
71	GO:0006183: GTP biosynthetic process	2.91E-03
72	GO:2000122: negative regulation of stomatal complex development	2.91E-03
73	GO:0051567: histone H3-K9 methylation	2.91E-03
74	GO:0010037: response to carbon dioxide	2.91E-03
75	GO:0010114: response to red light	3.13E-03
76	GO:0009411: response to UV	3.45E-03
77	GO:0048359: mucilage metabolic process involved in seed coat development	3.73E-03
78	GO:0032543: mitochondrial translation	3.73E-03
79	GO:0006564: L-serine biosynthetic process	3.73E-03
80	GO:0010236: plastoquinone biosynthetic process	3.73E-03
81	GO:0045038: protein import into chloroplast thylakoid membrane	3.73E-03
82	GO:0031365: N-terminal protein amino acid modification	3.73E-03
83	GO:0009306: protein secretion	3.75E-03
84	GO:0009664: plant-type cell wall organization	4.19E-03
85	GO:0042335: cuticle development	4.40E-03
86	GO:0042549: photosystem II stabilization	4.61E-03
87	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	4.61E-03
88	GO:0000470: maturation of LSU-rRNA	4.61E-03
89	GO:0016458: gene silencing	4.61E-03
90	GO:0010019: chloroplast-nucleus signaling pathway	5.57E-03
91	GO:0010555: response to mannitol	5.57E-03
92	GO:0009955: adaxial/abaxial pattern specification	5.57E-03
93	GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	5.57E-03
94	GO:0017148: negative regulation of translation	5.57E-03
95	GO:0006694: steroid biosynthetic process	5.57E-03
96	GO:0009826: unidimensional cell growth	5.95E-03
97	GO:0006457: protein folding	6.08E-03
98	GO:0006614: SRP-dependent cotranslational protein targeting to membrane	6.58E-03
99	GO:0006400: tRNA modification	6.58E-03
100	GO:0030091: protein repair	7.65E-03
101	GO:0009642: response to light intensity	7.65E-03
102	GO:0042255: ribosome assembly	7.65E-03
103	GO:0006605: protein targeting	7.65E-03
104	GO:0000028: ribosomal small subunit assembly	7.65E-03
105	GO:0009808: lignin metabolic process	8.79E-03
106	GO:0071482: cellular response to light stimulus	8.79E-03
107	GO:0010497: plasmodesmata-mediated intercellular transport	8.79E-03
108	GO:0006526: arginine biosynthetic process	8.79E-03
109	GO:0009409: response to cold	9.73E-03
110	GO:0015780: nucleotide-sugar transport	9.98E-03
111	GO:0010206: photosystem II repair	9.98E-03
112	GO:0006783: heme biosynthetic process	9.98E-03
113	GO:0018298: protein-chromophore linkage	1.11E-02
114	GO:0009790: embryo development	1.17E-02
115	GO:0010311: lateral root formation	1.17E-02
116	GO:0030422: production of siRNA involved in RNA interference	1.25E-02
117	GO:0048829: root cap development	1.25E-02
118	GO:0009631: cold acclimation	1.29E-02
119	GO:0040008: regulation of growth	1.36E-02
120	GO:0009073: aromatic amino acid family biosynthetic process	1.39E-02
121	GO:0043085: positive regulation of catalytic activity	1.39E-02
122	GO:0006879: cellular iron ion homeostasis	1.39E-02
123	GO:0006415: translational termination	1.39E-02
124	GO:0006352: DNA-templated transcription, initiation	1.39E-02
125	GO:0048765: root hair cell differentiation	1.39E-02
126	GO:0009637: response to blue light	1.41E-02
127	GO:0045490: pectin catabolic process	1.45E-02
128	GO:0034599: cellular response to oxidative stress	1.48E-02
129	GO:0016024: CDP-diacylglycerol biosynthetic process	1.53E-02
130	GO:0009725: response to hormone	1.67E-02
131	GO:0006006: glucose metabolic process	1.67E-02
132	GO:0019253: reductive pentose-phosphate cycle	1.82E-02
133	GO:0019762: glucosinolate catabolic process	2.14E-02
134	GO:0019344: cysteine biosynthetic process	2.30E-02
135	GO:0000027: ribosomal large subunit assembly	2.30E-02
136	GO:0006813: potassium ion transport	2.46E-02
137	GO:0006418: tRNA aminoacylation for protein translation	2.47E-02
138	GO:0009768: photosynthesis, light harvesting in photosystem I	2.47E-02
139	GO:0009734: auxin-activated signaling pathway	2.63E-02
140	GO:0061077: chaperone-mediated protein folding	2.64E-02
141	GO:0006306: DNA methylation	2.64E-02
142	GO:0003333: amino acid transmembrane transport	2.64E-02
143	GO:0030245: cellulose catabolic process	2.82E-02
144	GO:0019722: calcium-mediated signaling	3.18E-02
145	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	3.43E-02
146	GO:0080022: primary root development	3.56E-02
147	GO:0008033: tRNA processing	3.56E-02
148	GO:0006342: chromatin silencing	3.75E-02
149	GO:0009958: positive gravitropism	3.75E-02
150	GO:0006520: cellular amino acid metabolic process	3.75E-02
151	GO:0006662: glycerol ether metabolic process	3.75E-02
152	GO:0015986: ATP synthesis coupled proton transport	3.95E-02
153	GO:0007018: microtubule-based movement	3.95E-02
154	GO:0016132: brassinosteroid biosynthetic process	4.36E-02
155	GO:0000302: response to reactive oxygen species	4.36E-02
156	GO:0002229: defense response to oomycetes	4.36E-02
157	GO:0032502: developmental process	4.57E-02
158	GO:0009630: gravitropism	4.57E-02
159	GO:0030163: protein catabolic process	4.78E-02

Rank	GO Term	Adjusted P value
1	GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity	0.00E+00
2	GO:0005048: signal sequence binding	0.00E+00
3	GO:0050614: delta24-sterol reductase activity	0.00E+00
4	GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity	0.00E+00
5	GO:0047450: crotonoyl-[acyl-carrier-protein] hydratase activity	0.00E+00
6	GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity	0.00E+00
7	GO:0050518: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity	0.00E+00
8	GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity	0.00E+00
9	GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity	0.00E+00
10	GO:0004822: isoleucine-tRNA ligase activity	0.00E+00
11	GO:0047661: amino-acid racemase activity	0.00E+00
12	GO:0008756: o-succinylbenzoate-CoA ligase activity	0.00E+00
13	GO:0019843: rRNA binding	1.96E-31
14	GO:0003735: structural constituent of ribosome	9.65E-22
15	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	9.48E-10
16	GO:0051920: peroxiredoxin activity	7.79E-08
17	GO:0016209: antioxidant activity	2.75E-07
18	GO:0016851: magnesium chelatase activity	3.78E-07
19	GO:0019171: 3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity	8.09E-06
20	GO:0005528: FK506 binding	1.19E-05
21	GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	2.78E-05
22	GO:0043023: ribosomal large subunit binding	6.06E-05
23	GO:0030570: pectate lyase activity	3.81E-04
24	GO:0042286: glutamate-1-semialdehyde 2,1-aminomutase activity	4.26E-04
25	GO:0003942: N-acetyl-gamma-glutamyl-phosphate reductase activity	4.26E-04
26	GO:0047381: dodecanoyl-[acyl-carrier-protein] hydrolase activity	4.26E-04
27	GO:0004425: indole-3-glycerol-phosphate synthase activity	4.26E-04
28	GO:0004655: porphobilinogen synthase activity	4.26E-04
29	GO:0004617: phosphoglycerate dehydrogenase activity	9.21E-04
30	GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity	9.21E-04
31	GO:0016630: protochlorophyllide reductase activity	9.21E-04
32	GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity	9.21E-04
33	GO:0016296: palmitoyl-[acyl-carrier-protein] hydrolase activity	1.50E-03
34	GO:0016295: myristoyl-[acyl-carrier-protein] hydrolase activity	1.50E-03
35	GO:0050734: hydroxycinnamoyltransferase activity	1.50E-03
36	GO:0002161: aminoacyl-tRNA editing activity	1.50E-03
37	GO:0004148: dihydrolipoyl dehydrogenase activity	1.50E-03
38	GO:0030267: glyoxylate reductase (NADP) activity	1.50E-03
39	GO:0004089: carbonate dehydratase activity	1.52E-03
40	GO:0016788: hydrolase activity, acting on ester bonds	1.56E-03
41	GO:0008266: poly(U) RNA binding	1.72E-03
42	GO:0008097: 5S rRNA binding	2.17E-03
43	GO:0016149: translation release factor activity, codon specific	2.17E-03
44	GO:0035197: siRNA binding	2.17E-03
45	GO:0004550: nucleoside diphosphate kinase activity	2.17E-03
46	GO:0008289: lipid binding	2.26E-03
47	GO:0004659: prenyltransferase activity	2.91E-03
48	GO:0001053: plastid sigma factor activity	2.91E-03
49	GO:0010011: auxin binding	2.91E-03
50	GO:0016836: hydro-lyase activity	2.91E-03
51	GO:0008574: ATP-dependent microtubule motor activity, plus-end-directed	2.91E-03
52	GO:0016987: sigma factor activity	2.91E-03
53	GO:0010328: auxin influx transmembrane transporter activity	2.91E-03
54	GO:0043495: protein anchor	2.91E-03
55	GO:0004392: heme oxygenase (decyclizing) activity	2.91E-03
56	GO:0003959: NADPH dehydrogenase activity	3.73E-03
57	GO:0016773: phosphotransferase activity, alcohol group as acceptor	3.73E-03
58	GO:0004040: amidase activity	3.73E-03
59	GO:0051287: NAD binding	4.00E-03
60	GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity	4.61E-03
61	GO:0008200: ion channel inhibitor activity	4.61E-03
62	GO:0004130: cytochrome-c peroxidase activity	4.61E-03
63	GO:0016208: AMP binding	4.61E-03
64	GO:0004366: glycerol-3-phosphate O-acyltransferase activity	4.61E-03
65	GO:0016688: L-ascorbate peroxidase activity	4.61E-03
66	GO:0033743: peptide-methionine (R)-S-oxide reductase activity	5.57E-03
67	GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity	5.57E-03
68	GO:0004723: calcium-dependent protein serine/threonine phosphatase activity	5.57E-03
69	GO:0004601: peroxidase activity	6.31E-03
70	GO:0016831: carboxy-lyase activity	6.58E-03
71	GO:0008235: metalloexopeptidase activity	6.58E-03
72	GO:0019899: enzyme binding	6.58E-03
73	GO:0008312: 7S RNA binding	7.65E-03
74	GO:0052747: sinapyl alcohol dehydrogenase activity	7.65E-03
75	GO:0004033: aldo-keto reductase (NADP) activity	7.65E-03
76	GO:0016168: chlorophyll binding	8.98E-03
77	GO:0003747: translation release factor activity	9.98E-03
78	GO:0052689: carboxylic ester hydrolase activity	1.02E-02
79	GO:0016829: lyase activity	1.06E-02
80	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	1.11E-02
81	GO:0005381: iron ion transmembrane transporter activity	1.12E-02
82	GO:0047617: acyl-CoA hydrolase activity	1.12E-02
83	GO:0004222: metalloendopeptidase activity	1.23E-02
84	GO:0008047: enzyme activator activity	1.25E-02
85	GO:0004177: aminopeptidase activity	1.39E-02
86	GO:0004521: endoribonuclease activity	1.53E-02
87	GO:0000049: tRNA binding	1.53E-02
88	GO:0045551: cinnamyl-alcohol dehydrogenase activity	1.53E-02
89	GO:0031072: heat shock protein binding	1.67E-02
90	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	1.92E-02
91	GO:0051537: 2 iron, 2 sulfur cluster binding	1.97E-02
92	GO:0043621: protein self-association	1.97E-02
93	GO:0031409: pigment binding	2.14E-02
94	GO:0051087: chaperone binding	2.47E-02
95	GO:0015079: potassium ion transmembrane transporter activity	2.47E-02
96	GO:0008324: cation transmembrane transporter activity	2.47E-02
97	GO:0003777: microtubule motor activity	2.73E-02
98	GO:0022891: substrate-specific transmembrane transporter activity	3.00E-02
99	GO:0008810: cellulase activity	3.00E-02
100	GO:0008514: organic anion transmembrane transporter activity	3.18E-02
101	GO:0003727: single-stranded RNA binding	3.18E-02
102	GO:0004812: aminoacyl-tRNA ligase activity	3.37E-02
103	GO:0047134: protein-disulfide reductase activity	3.37E-02
104	GO:0005509: calcium ion binding	3.44E-02
105	GO:0051082: unfolded protein binding	3.50E-02
106	GO:0008080: N-acetyltransferase activity	3.75E-02
107	GO:0046933: proton-transporting ATP synthase activity, rotational mechanism	3.75E-02
108	GO:0004791: thioredoxin-disulfide reductase activity	3.95E-02
109	GO:0016762: xyloglucan:xyloglucosyl transferase activity	4.36E-02
110	GO:0003723: RNA binding	4.60E-02
111	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	4.78E-02
112	GO:0016791: phosphatase activity	4.99E-02

Rank	GO Term	Adjusted P value
1	GO:0009547: plastid ribosome	0.00E+00
2	GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex	0.00E+00
3	GO:0009515: granal stacked thylakoid	0.00E+00
4	GO:0044391: ribosomal subunit	0.00E+00
5	GO:0009507: chloroplast	2.09E-71
6	GO:0009570: chloroplast stroma	4.13E-62
7	GO:0009941: chloroplast envelope	1.72E-45
8	GO:0009535: chloroplast thylakoid membrane	4.91E-29
9	GO:0009579: thylakoid	1.04E-26
10	GO:0005840: ribosome	7.44E-21
11	GO:0009534: chloroplast thylakoid	3.86E-20
12	GO:0031977: thylakoid lumen	3.15E-18
13	GO:0009543: chloroplast thylakoid lumen	3.93E-18
14	GO:0010007: magnesium chelatase complex	7.87E-08
15	GO:0048046: apoplast	2.84E-06
16	GO:0009654: photosystem II oxygen evolving complex	1.48E-05
17	GO:0016020: membrane	1.64E-05
18	GO:0019898: extrinsic component of membrane	6.61E-05
19	GO:0000311: plastid large ribosomal subunit	9.79E-05
20	GO:0010319: stromule	1.21E-04
21	GO:0030095: chloroplast photosystem II	1.43E-04
22	GO:0000312: plastid small ribosomal subunit	1.43E-04
23	GO:0005618: cell wall	2.19E-04
24	GO:0015934: large ribosomal subunit	3.00E-04
25	GO:0009533: chloroplast stromal thylakoid	4.06E-04
26	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	7.43E-04
27	GO:0080085: signal recognition particle, chloroplast targeting	9.21E-04
28	GO:0009505: plant-type cell wall	1.02E-03
29	GO:0046658: anchored component of plasma membrane	1.14E-03
30	GO:0005719: nuclear euchromatin	2.17E-03
31	GO:0031969: chloroplast membrane	2.20E-03
32	GO:0042651: thylakoid membrane	2.63E-03
33	GO:0009536: plastid	2.79E-03
34	GO:0015935: small ribosomal subunit	2.89E-03
35	GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1)	4.61E-03
36	GO:0009523: photosystem II	5.47E-03
37	GO:0009986: cell surface	6.58E-03
38	GO:0030529: intracellular ribonucleoprotein complex	8.49E-03
39	GO:0031225: anchored component of membrane	8.74E-03
40	GO:0005786: signal recognition particle, endoplasmic reticulum targeting	8.79E-03
41	GO:0010287: plastoglobule	8.96E-03
42	GO:0022625: cytosolic large ribosomal subunit	9.45E-03
43	GO:0005763: mitochondrial small ribosomal subunit	9.98E-03
44	GO:0008180: COP9 signalosome	9.98E-03
45	GO:0022626: cytosolic ribosome	1.10E-02
46	GO:0015030: Cajal body	1.12E-02
47	GO:0031012: extracellular matrix	1.67E-02
48	GO:0030076: light-harvesting complex	1.98E-02
49	GO:0022627: cytosolic small ribosomal subunit	2.07E-02
50	GO:0005875: microtubule associated complex	2.14E-02
51	GO:0005874: microtubule	3.15E-02
52	GO:0005871: kinesin complex	3.37E-02
53	GO:0009706: chloroplast inner membrane	3.50E-02
54	GO:0009522: photosystem I	3.95E-02
55	GO:0005576: extracellular region	4.50E-02