co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G78580

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0090470: shoot organ boundary specification	0.00E+00
2	GO:1905499: trichome papilla formation	0.00E+00
3	GO:0015994: chlorophyll metabolic process	1.51E-06
4	GO:0010189: vitamin E biosynthetic process	5.84E-06
5	GO:0000373: Group II intron splicing	1.78E-05
6	GO:0009773: photosynthetic electron transport in photosystem I	3.20E-05
7	GO:1902025: nitrate import	3.50E-05
8	GO:0080051: cutin transport	3.50E-05
9	GO:0090548: response to nitrate starvation	3.50E-05
10	GO:0009915: phloem sucrose loading	8.78E-05
11	GO:0015908: fatty acid transport	8.78E-05
12	GO:0010115: regulation of abscisic acid biosynthetic process	8.78E-05
13	GO:0016122: xanthophyll metabolic process	8.78E-05
14	GO:0042335: cuticle development	1.48E-04
15	GO:0090391: granum assembly	1.52E-04
16	GO:0010371: regulation of gibberellin biosynthetic process	2.25E-04
17	GO:0010021: amylopectin biosynthetic process	3.05E-04
18	GO:0010222: stem vascular tissue pattern formation	3.05E-04
19	GO:0045727: positive regulation of translation	3.05E-04
20	GO:0006564: L-serine biosynthetic process	3.89E-04
21	GO:0010236: plastoquinone biosynthetic process	3.89E-04
22	GO:0006665: sphingolipid metabolic process	3.89E-04
23	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	4.45E-04
24	GO:0009913: epidermal cell differentiation	4.78E-04
25	GO:0006561: proline biosynthetic process	4.78E-04
26	GO:0010196: nonphotochemical quenching	6.66E-04
27	GO:0009395: phospholipid catabolic process	6.66E-04
28	GO:0008610: lipid biosynthetic process	7.68E-04
29	GO:0031540: regulation of anthocyanin biosynthetic process	7.68E-04
30	GO:0016559: peroxisome fission	7.68E-04
31	GO:0048564: photosystem I assembly	7.68E-04
32	GO:0045292: mRNA cis splicing, via spliceosome	7.68E-04
33	GO:0032544: plastid translation	8.71E-04
34	GO:0090305: nucleic acid phosphodiester bond hydrolysis	9.78E-04
35	GO:0034765: regulation of ion transmembrane transport	9.78E-04
36	GO:0042761: very long-chain fatty acid biosynthetic process	1.09E-03
37	GO:0010205: photoinhibition	1.09E-03
38	GO:0009688: abscisic acid biosynthetic process	1.20E-03
39	GO:0009735: response to cytokinin	1.26E-03
40	GO:0008285: negative regulation of cell proliferation	1.32E-03
41	GO:0009750: response to fructose	1.32E-03
42	GO:0000038: very long-chain fatty acid metabolic process	1.32E-03
43	GO:0010588: cotyledon vascular tissue pattern formation	1.57E-03
44	GO:0010628: positive regulation of gene expression	1.57E-03
45	GO:0010229: inflorescence development	1.57E-03
46	GO:0010020: chloroplast fission	1.70E-03
47	GO:0009266: response to temperature stimulus	1.70E-03
48	GO:0048467: gynoecium development	1.70E-03
49	GO:0006633: fatty acid biosynthetic process	1.78E-03
50	GO:0071732: cellular response to nitric oxide	1.84E-03
51	GO:0007623: circadian rhythm	1.95E-03
52	GO:0010025: wax biosynthetic process	1.97E-03
53	GO:0006636: unsaturated fatty acid biosynthetic process	1.97E-03
54	GO:0042023: DNA endoreduplication	1.97E-03
55	GO:0009451: RNA modification	1.99E-03
56	GO:0009695: jasmonic acid biosynthetic process	2.26E-03
57	GO:0009768: photosynthesis, light harvesting in photosystem I	2.26E-03
58	GO:0010073: meristem maintenance	2.26E-03
59	GO:0031408: oxylipin biosynthetic process	2.41E-03
60	GO:0009269: response to desiccation	2.41E-03
61	GO:0071369: cellular response to ethylene stimulus	2.71E-03
62	GO:0010227: floral organ abscission	2.71E-03
63	GO:0010091: trichome branching	2.87E-03
64	GO:0042391: regulation of membrane potential	3.20E-03
65	GO:0010182: sugar mediated signaling pathway	3.36E-03
66	GO:0019252: starch biosynthetic process	3.70E-03
67	GO:0055114: oxidation-reduction process	4.05E-03
68	GO:0015979: photosynthesis	4.21E-03
69	GO:0071281: cellular response to iron ion	4.24E-03
70	GO:0010252: auxin homeostasis	4.42E-03
71	GO:0071805: potassium ion transmembrane transport	4.60E-03
72	GO:0010027: thylakoid membrane organization	4.99E-03
73	GO:0015995: chlorophyll biosynthetic process	5.58E-03
74	GO:0005975: carbohydrate metabolic process	5.79E-03
75	GO:0018298: protein-chromophore linkage	5.99E-03
76	GO:0010218: response to far red light	6.40E-03
77	GO:0009637: response to blue light	7.05E-03
78	GO:0006631: fatty acid metabolic process	7.95E-03
79	GO:0009640: photomorphogenesis	8.41E-03
80	GO:0008283: cell proliferation	8.41E-03
81	GO:0010114: response to red light	8.41E-03
82	GO:0008643: carbohydrate transport	8.88E-03
83	GO:0009644: response to high light intensity	8.88E-03
84	GO:0009737: response to abscisic acid	8.91E-03
85	GO:0031347: regulation of defense response	9.61E-03
86	GO:0009809: lignin biosynthetic process	1.04E-02
87	GO:0006364: rRNA processing	1.04E-02
88	GO:0009651: response to salt stress	1.59E-02
89	GO:0042744: hydrogen peroxide catabolic process	1.71E-02
90	GO:0006979: response to oxidative stress	1.97E-02
91	GO:0010228: vegetative to reproductive phase transition of meristem	2.02E-02
92	GO:0009658: chloroplast organization	2.67E-02
93	GO:0080167: response to karrikin	3.11E-02
94	GO:0032259: methylation	3.98E-02
95	GO:0016042: lipid catabolic process	4.03E-02
96	GO:0009408: response to heat	4.11E-02
97	GO:0006468: protein phosphorylation	4.49E-02

Rank	GO Term	Adjusted P value
1	GO:0010301: xanthoxin dehydrogenase activity	0.00E+00
2	GO:0009976: tocopherol cyclase activity	0.00E+00
3	GO:0019166: trans-2-enoyl-CoA reductase (NADPH) activity	0.00E+00
4	GO:0102550: 2-methyl-6-geranylgeranyl-1,4-benzoquinol methyltransferase activity	0.00E+00
5	GO:0045485: omega-6 fatty acid desaturase activity	3.50E-05
6	GO:0004321: fatty-acyl-CoA synthase activity	3.50E-05
7	GO:0015245: fatty acid transporter activity	3.50E-05
8	GO:0051741: 2-methyl-6-phytyl-1,4-benzoquinone methyltransferase activity	3.50E-05
9	GO:0016630: protochlorophyllide reductase activity	8.78E-05
10	GO:0047746: chlorophyllase activity	8.78E-05
11	GO:0004617: phosphoglycerate dehydrogenase activity	8.78E-05
12	GO:0033201: alpha-1,4-glucan synthase activity	8.78E-05
13	GO:0004373: glycogen (starch) synthase activity	1.52E-04
14	GO:0003865: 3-oxo-5-alpha-steroid 4-dehydrogenase activity	2.25E-04
15	GO:0009011: starch synthase activity	3.05E-04
16	GO:0042277: peptide binding	3.05E-04
17	GO:0003959: NADPH dehydrogenase activity	3.89E-04
18	GO:0009922: fatty acid elongase activity	3.89E-04
19	GO:0005242: inward rectifier potassium channel activity	5.70E-04
20	GO:0052747: sinapyl alcohol dehydrogenase activity	7.68E-04
21	GO:0016627: oxidoreductase activity, acting on the CH-CH group of donors	9.78E-04
22	GO:0016207: 4-coumarate-CoA ligase activity	9.78E-04
23	GO:0045551: cinnamyl-alcohol dehydrogenase activity	1.44E-03
24	GO:0004565: beta-galactosidase activity	1.57E-03
25	GO:0004022: alcohol dehydrogenase (NAD) activity	1.57E-03
26	GO:0008266: poly(U) RNA binding	1.70E-03
27	GO:0102337: 3-oxo-cerotoyl-CoA synthase activity	1.97E-03
28	GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity	1.97E-03
29	GO:0031409: pigment binding	1.97E-03
30	GO:0102336: 3-oxo-arachidoyl-CoA synthase activity	1.97E-03
31	GO:0042802: identical protein binding	2.46E-03
32	GO:0016788: hydrolase activity, acting on ester bonds	3.04E-03
33	GO:0030551: cyclic nucleotide binding	3.20E-03
34	GO:0005249: voltage-gated potassium channel activity	3.20E-03
35	GO:0050662: coenzyme binding	3.53E-03
36	GO:0016853: isomerase activity	3.53E-03
37	GO:0004518: nuclease activity	4.06E-03
38	GO:0016597: amino acid binding	4.80E-03
39	GO:0016491: oxidoreductase activity	4.84E-03
40	GO:0016168: chlorophyll binding	5.18E-03
41	GO:0004672: protein kinase activity	5.56E-03
42	GO:0008757: S-adenosylmethionine-dependent methyltransferase activity	5.78E-03
43	GO:0004519: endonuclease activity	5.91E-03
44	GO:0003993: acid phosphatase activity	7.27E-03
45	GO:0051287: NAD binding	9.61E-03
46	GO:0045735: nutrient reservoir activity	1.17E-02
47	GO:0016874: ligase activity	1.27E-02
48	GO:0030246: carbohydrate binding	1.30E-02
49	GO:0016746: transferase activity, transferring acyl groups	1.36E-02
50	GO:0005507: copper ion binding	1.38E-02
51	GO:0019843: rRNA binding	1.56E-02
52	GO:0008017: microtubule binding	2.02E-02
53	GO:0003824: catalytic activity	2.15E-02
54	GO:0042626: ATPase activity, coupled to transmembrane movement of substances	2.32E-02
55	GO:0004674: protein serine/threonine kinase activity	2.57E-02
56	GO:0008168: methyltransferase activity	2.60E-02
57	GO:0004601: peroxidase activity	2.67E-02
58	GO:0052689: carboxylic ester hydrolase activity	3.34E-02
59	GO:0042803: protein homodimerization activity	3.66E-02
60	GO:0003924: GTPase activity	4.11E-02
61	GO:0009055: electron carrier activity	4.32E-02
62	GO:0003723: RNA binding	4.54E-02

Rank	GO Term	Adjusted P value
1	GO:0009534: chloroplast thylakoid	5.47E-08
2	GO:0009507: chloroplast	5.47E-06
3	GO:0009515: granal stacked thylakoid	3.50E-05
4	GO:0009923: fatty acid elongase complex	3.50E-05
5	GO:0009941: chloroplast envelope	4.88E-05
6	GO:0009535: chloroplast thylakoid membrane	5.36E-05
7	GO:0009706: chloroplast inner membrane	8.15E-05
8	GO:0010287: plastoglobule	1.05E-04
9	GO:0009897: external side of plasma membrane	1.52E-04
10	GO:0009501: amyloplast	7.68E-04
11	GO:0048046: apoplast	8.83E-04
12	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	9.78E-04
13	GO:0005578: proteinaceous extracellular matrix	1.57E-03
14	GO:0030076: light-harvesting complex	1.84E-03
15	GO:0009522: photosystem I	3.53E-03
16	GO:0005789: endoplasmic reticulum membrane	5.84E-03
17	GO:0009707: chloroplast outer membrane	5.99E-03
18	GO:0043231: intracellular membrane-bounded organelle	5.99E-03
19	GO:0009570: chloroplast stroma	9.82E-03
20	GO:0005777: peroxisome	1.11E-02
21	GO:0005618: cell wall	1.96E-02
22	GO:0046658: anchored component of plasma membrane	2.39E-02
23	GO:0009505: plant-type cell wall	2.46E-02
24	GO:0016021: integral component of membrane	2.54E-02
25	GO:0005773: vacuole	2.82E-02
26	GO:0031969: chloroplast membrane	3.11E-02