co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G76590

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0000390: spliceosomal complex disassembly	0.00E+00
2	GO:0019481: L-alanine catabolic process, by transamination	0.00E+00
3	GO:0019484: beta-alanine catabolic process	0.00E+00
4	GO:0010730: negative regulation of hydrogen peroxide biosynthetic process	0.00E+00
5	GO:0009448: gamma-aminobutyric acid metabolic process	0.00E+00
6	GO:0098755: maintenance of seed dormancy by absisic acid	0.00E+00
7	GO:0006105: succinate metabolic process	0.00E+00
8	GO:0009415: response to water	2.27E-06
9	GO:0042344: indole glucosinolate catabolic process	5.87E-06
10	GO:0009737: response to abscisic acid	2.68E-05
11	GO:0009409: response to cold	1.54E-04
12	GO:1902265: abscisic acid homeostasis	1.82E-04
13	GO:0071366: cellular response to indolebutyric acid stimulus	1.82E-04
14	GO:0046520: sphingoid biosynthetic process	1.82E-04
15	GO:0009865: pollen tube adhesion	1.82E-04
16	GO:0006540: glutamate decarboxylation to succinate	1.82E-04
17	GO:0009450: gamma-aminobutyric acid catabolic process	1.82E-04
18	GO:1990641: response to iron ion starvation	1.82E-04
19	GO:0010184: cytokinin transport	1.82E-04
20	GO:0052544: defense response by callose deposition in cell wall	3.54E-04
21	GO:1900459: positive regulation of brassinosteroid mediated signaling pathway	4.10E-04
22	GO:0006101: citrate metabolic process	4.10E-04
23	GO:0009257: 10-formyltetrahydrofolate biosynthetic process	4.10E-04
24	GO:0032509: endosome transport via multivesicular body sorting pathway	4.10E-04
25	GO:0010033: response to organic substance	4.10E-04
26	GO:0009651: response to salt stress	4.89E-04
27	GO:0007034: vacuolar transport	5.21E-04
28	GO:0006954: inflammatory response	6.69E-04
29	GO:0006278: RNA-dependent DNA biosynthetic process	6.69E-04
30	GO:0030029: actin filament-based process	6.69E-04
31	GO:0009269: response to desiccation	8.65E-04
32	GO:0009399: nitrogen fixation	9.55E-04
33	GO:0009113: purine nucleobase biosynthetic process	9.55E-04
34	GO:1901332: negative regulation of lateral root development	9.55E-04
35	GO:0006882: cellular zinc ion homeostasis	9.55E-04
36	GO:0000578: embryonic axis specification	9.55E-04
37	GO:0006624: vacuolar protein processing	9.55E-04
38	GO:0048194: Golgi vesicle budding	9.55E-04
39	GO:0006020: inositol metabolic process	9.55E-04
40	GO:0010601: positive regulation of auxin biosynthetic process	9.55E-04
41	GO:0015749: monosaccharide transport	9.55E-04
42	GO:0051603: proteolysis involved in cellular protein catabolic process	9.98E-04
43	GO:0006979: response to oxidative stress	1.25E-03
44	GO:0006878: cellular copper ion homeostasis	1.27E-03
45	GO:0006646: phosphatidylethanolamine biosynthetic process	1.27E-03
46	GO:0009687: abscisic acid metabolic process	1.27E-03
47	GO:0006536: glutamate metabolic process	1.27E-03
48	GO:0022622: root system development	1.27E-03
49	GO:0043097: pyrimidine nucleoside salvage	1.61E-03
50	GO:0006206: pyrimidine nucleobase metabolic process	1.98E-03
51	GO:0000741: karyogamy	1.98E-03
52	GO:0015691: cadmium ion transport	1.98E-03
53	GO:0006388: tRNA splicing, via endonucleolytic cleavage and ligation	1.98E-03
54	GO:0042732: D-xylose metabolic process	1.98E-03
55	GO:0010358: leaf shaping	1.98E-03
56	GO:0010286: heat acclimation	2.19E-03
57	GO:0031930: mitochondria-nucleus signaling pathway	2.38E-03
58	GO:0006694: steroid biosynthetic process	2.38E-03
59	GO:0001666: response to hypoxia	2.46E-03
60	GO:0009396: folic acid-containing compound biosynthetic process	2.80E-03
61	GO:0006333: chromatin assembly or disassembly	2.80E-03
62	GO:0010044: response to aluminum ion	2.80E-03
63	GO:0032880: regulation of protein localization	2.80E-03
64	GO:0098869: cellular oxidant detoxification	2.80E-03
65	GO:0046470: phosphatidylcholine metabolic process	2.80E-03
66	GO:0009395: phospholipid catabolic process	2.80E-03
67	GO:0048437: floral organ development	2.80E-03
68	GO:0006614: SRP-dependent cotranslational protein targeting to membrane	2.80E-03
69	GO:0006950: response to stress	2.89E-03
70	GO:0046686: response to cadmium ion	2.96E-03
71	GO:0009817: defense response to fungus, incompatible interaction	3.20E-03
72	GO:0009819: drought recovery	3.24E-03
73	GO:0006605: protein targeting	3.24E-03
74	GO:0006102: isocitrate metabolic process	3.24E-03
75	GO:0016559: peroxisome fission	3.24E-03
76	GO:0009061: anaerobic respiration	3.24E-03
77	GO:0006811: ion transport	3.53E-03
78	GO:0009631: cold acclimation	3.70E-03
79	GO:0010262: somatic embryogenesis	3.71E-03
80	GO:0046916: cellular transition metal ion homeostasis	4.20E-03
81	GO:0006098: pentose-phosphate shunt	4.20E-03
82	GO:0006099: tricarboxylic acid cycle	4.23E-03
83	GO:0009414: response to water deprivation	4.41E-03
84	GO:0009862: systemic acquired resistance, salicylic acid mediated signaling pathway	4.71E-03
85	GO:0035999: tetrahydrofolate interconversion	4.71E-03
86	GO:0042542: response to hydrogen peroxide	5.00E-03
87	GO:0006995: cellular response to nitrogen starvation	5.24E-03
88	GO:0006535: cysteine biosynthetic process from serine	5.24E-03
89	GO:0048829: root cap development	5.24E-03
90	GO:0009970: cellular response to sulfate starvation	5.24E-03
91	GO:0009682: induced systemic resistance	5.79E-03
92	GO:0006378: mRNA polyadenylation	5.79E-03
93	GO:0035556: intracellular signal transduction	6.14E-03
94	GO:0000165: MAPK cascade	6.31E-03
95	GO:2000012: regulation of auxin polar transport	6.94E-03
96	GO:0016192: vesicle-mediated transport	7.22E-03
97	GO:0006541: glutamine metabolic process	7.55E-03
98	GO:0005985: sucrose metabolic process	8.18E-03
99	GO:0010030: positive regulation of seed germination	8.18E-03
100	GO:0007031: peroxisome organization	8.18E-03
101	GO:0048367: shoot system development	8.57E-03
102	GO:0006863: purine nucleobase transport	8.82E-03
103	GO:0045333: cellular respiration	9.48E-03
104	GO:0019344: cysteine biosynthetic process	9.48E-03
105	GO:0016575: histone deacetylation	1.02E-02
106	GO:0006396: RNA processing	1.03E-02
107	GO:0031348: negative regulation of defense response	1.16E-02
108	GO:0071215: cellular response to abscisic acid stimulus	1.23E-02
109	GO:0040007: growth	1.23E-02
110	GO:0006012: galactose metabolic process	1.23E-02
111	GO:0048443: stamen development	1.31E-02
112	GO:0009845: seed germination	1.36E-02
113	GO:0008284: positive regulation of cell proliferation	1.38E-02
114	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	1.38E-02
115	GO:0042391: regulation of membrane potential	1.46E-02
116	GO:0080022: primary root development	1.46E-02
117	GO:0015991: ATP hydrolysis coupled proton transport	1.46E-02
118	GO:0042631: cellular response to water deprivation	1.46E-02
119	GO:0009790: embryo development	1.47E-02
120	GO:0010154: fruit development	1.54E-02
121	GO:0009958: positive gravitropism	1.54E-02
122	GO:0010197: polar nucleus fusion	1.54E-02
123	GO:0046323: glucose import	1.54E-02
124	GO:0009960: endosperm development	1.54E-02
125	GO:0042752: regulation of circadian rhythm	1.62E-02
126	GO:0042742: defense response to bacterium	1.64E-02
127	GO:0007165: signal transduction	1.64E-02
128	GO:0008654: phospholipid biosynthetic process	1.70E-02
129	GO:0009556: microsporogenesis	1.70E-02
130	GO:0010183: pollen tube guidance	1.70E-02
131	GO:0007623: circadian rhythm	1.74E-02
132	GO:0006635: fatty acid beta-oxidation	1.79E-02
133	GO:0007166: cell surface receptor signaling pathway	1.99E-02
134	GO:0006914: autophagy	2.05E-02
135	GO:0009567: double fertilization forming a zygote and endosperm	2.05E-02
136	GO:0019760: glucosinolate metabolic process	2.05E-02
137	GO:0009617: response to bacterium	2.07E-02
138	GO:0010468: regulation of gene expression	2.07E-02
139	GO:0016126: sterol biosynthetic process	2.32E-02
140	GO:0015031: protein transport	2.35E-02
141	GO:0010029: regulation of seed germination	2.42E-02
142	GO:0009627: systemic acquired resistance	2.51E-02
143	GO:0048573: photoperiodism, flowering	2.61E-02
144	GO:0006970: response to osmotic stress	2.89E-02
145	GO:0010311: lateral root formation	2.91E-02
146	GO:0048527: lateral root development	3.11E-02
147	GO:0010119: regulation of stomatal movement	3.11E-02
148	GO:0010043: response to zinc ion	3.11E-02
149	GO:0016051: carbohydrate biosynthetic process	3.32E-02
150	GO:0030001: metal ion transport	3.65E-02
151	GO:0006631: fatty acid metabolic process	3.76E-02
152	GO:0009640: photomorphogenesis	3.98E-02
153	GO:0051707: response to other organism	3.98E-02
154	GO:0045454: cell redox homeostasis	3.98E-02
155	GO:0009644: response to high light intensity	4.21E-02
156	GO:0006855: drug transmembrane transport	4.44E-02
157	GO:0016042: lipid catabolic process	4.76E-02
158	GO:0009408: response to heat	4.89E-02

Rank	GO Term	Adjusted P value
1	GO:0004491: methylmalonate-semialdehyde dehydrogenase (acylating) activity	0.00E+00
2	GO:0005358: high-affinity hydrogen:glucose symporter activity	0.00E+00
3	GO:0034387: 4-aminobutyrate:pyruvate transaminase activity	0.00E+00
4	GO:0015211: purine nucleoside transmembrane transporter activity	0.00E+00
5	GO:1990446: U1 snRNP binding	0.00E+00
6	GO:0009045: xylose isomerase activity	0.00E+00
7	GO:0004525: ribonuclease III activity	1.43E-04
8	GO:0047066: phospholipid-hydroperoxide glutathione peroxidase activity	1.82E-04
9	GO:0003867: 4-aminobutyrate transaminase activity	1.82E-04
10	GO:0009679: hexose:proton symporter activity	1.82E-04
11	GO:0000170: sphingosine hydroxylase activity	1.82E-04
12	GO:0046870: cadmium ion binding	1.82E-04
13	GO:0004112: cyclic-nucleotide phosphodiesterase activity	1.82E-04
14	GO:0047012: sterol-4-alpha-carboxylate 3-dehydrogenase (decarboxylating) activity	4.10E-04
15	GO:0004329: formate-tetrahydrofolate ligase activity	4.10E-04
16	GO:0032791: lead ion binding	4.10E-04
17	GO:0004609: phosphatidylserine decarboxylase activity	4.10E-04
18	GO:0047216: inositol 3-alpha-galactosyltransferase activity	4.10E-04
19	GO:0003994: aconitate hydratase activity	4.10E-04
20	GO:0004488: methylenetetrahydrofolate dehydrogenase (NADP+) activity	4.10E-04
21	GO:0004477: methenyltetrahydrofolate cyclohydrolase activity	4.10E-04
22	GO:0042284: sphingolipid delta-4 desaturase activity	4.10E-04
23	GO:0050897: cobalt ion binding	4.25E-04
24	GO:0004096: catalase activity	6.69E-04
25	GO:0005047: signal recognition particle binding	6.69E-04
26	GO:0003854: 3-beta-hydroxy-delta5-steroid dehydrogenase activity	6.69E-04
27	GO:0004707: MAP kinase activity	8.65E-04
28	GO:0004021: L-alanine:2-oxoglutarate aminotransferase activity	9.55E-04
29	GO:0015086: cadmium ion transmembrane transporter activity	9.55E-04
30	GO:0004108: citrate (Si)-synthase activity	9.55E-04
31	GO:0030527: structural constituent of chromatin	9.55E-04
32	GO:0048027: mRNA 5'-UTR binding	9.55E-04
33	GO:0009916: alternative oxidase activity	1.27E-03
34	GO:0004737: pyruvate decarboxylase activity	1.27E-03
35	GO:0043015: gamma-tubulin binding	1.27E-03
36	GO:0005546: phosphatidylinositol-4,5-bisphosphate binding	1.61E-03
37	GO:0004356: glutamate-ammonia ligase activity	1.61E-03
38	GO:0010294: abscisic acid glucosyltransferase activity	1.61E-03
39	GO:0015145: monosaccharide transmembrane transporter activity	1.61E-03
40	GO:0004197: cysteine-type endopeptidase activity	1.82E-03
41	GO:0000293: ferric-chelate reductase activity	1.98E-03
42	GO:0019137: thioglucosidase activity	1.98E-03
43	GO:0030976: thiamine pyrophosphate binding	1.98E-03
44	GO:0004629: phospholipase C activity	1.98E-03
45	GO:0070300: phosphatidic acid binding	2.38E-03
46	GO:0004012: phospholipid-translocating ATPase activity	2.38E-03
47	GO:0004849: uridine kinase activity	2.38E-03
48	GO:0004602: glutathione peroxidase activity	2.38E-03
49	GO:0004435: phosphatidylinositol phospholipase C activity	2.38E-03
50	GO:0004124: cysteine synthase activity	2.38E-03
51	GO:0004620: phospholipase activity	2.80E-03
52	GO:0016831: carboxy-lyase activity	2.80E-03
53	GO:0005096: GTPase activator activity	3.36E-03
54	GO:0070290: N-acylphosphatidylethanolamine-specific phospholipase D activity	3.71E-03
55	GO:0004630: phospholipase D activity	3.71E-03
56	GO:0032041: NAD-dependent histone deacetylase activity (H3-K14 specific)	3.71E-03
57	GO:0004028: 3-chloroallyl aldehyde dehydrogenase activity	4.71E-03
58	GO:0016301: kinase activity	5.67E-03
59	GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism	6.94E-03
60	GO:0008081: phosphoric diester hydrolase activity	6.94E-03
61	GO:0004565: beta-galactosidase activity	6.94E-03
62	GO:0008083: growth factor activity	7.55E-03
63	GO:0004175: endopeptidase activity	7.55E-03
64	GO:0030552: cAMP binding	8.18E-03
65	GO:0030553: cGMP binding	8.18E-03
66	GO:0004407: histone deacetylase activity	9.48E-03
67	GO:0005507: copper ion binding	9.67E-03
68	GO:0005216: ion channel activity	1.02E-02
69	GO:0043424: protein histidine kinase binding	1.02E-02
70	GO:0005345: purine nucleobase transmembrane transporter activity	1.02E-02
71	GO:0003964: RNA-directed DNA polymerase activity	1.09E-02
72	GO:0005524: ATP binding	1.32E-02
73	GO:0030170: pyridoxal phosphate binding	1.39E-02
74	GO:0005249: voltage-gated potassium channel activity	1.46E-02
75	GO:0030551: cyclic nucleotide binding	1.46E-02
76	GO:0005509: calcium ion binding	1.46E-02
77	GO:0015144: carbohydrate transmembrane transporter activity	1.50E-02
78	GO:0005351: sugar:proton symporter activity	1.69E-02
79	GO:0005200: structural constituent of cytoskeleton	2.14E-02
80	GO:0030247: polysaccharide binding	2.61E-02
81	GO:0102483: scopolin beta-glucosidase activity	2.61E-02
82	GO:0000287: magnesium ion binding	2.64E-02
83	GO:0003993: acid phosphatase activity	3.43E-02
84	GO:0008422: beta-glucosidase activity	3.54E-02
85	GO:0051539: 4 iron, 4 sulfur cluster binding	3.65E-02
86	GO:0005516: calmodulin binding	3.82E-02
87	GO:0035091: phosphatidylinositol binding	4.21E-02
88	GO:0043621: protein self-association	4.21E-02

Rank	GO Term	Adjusted P value
1	GO:0031981: nuclear lumen	0.00E+00
2	GO:0071008: U2-type post-mRNA release spliceosomal complex	0.00E+00
3	GO:0005785: signal recognition particle receptor complex	0.00E+00
4	GO:0005886: plasma membrane	5.94E-06
5	GO:0000323: lytic vacuole	1.35E-05
6	GO:0005777: peroxisome	3.97E-04
7	GO:0005773: vacuole	5.61E-04
8	GO:0005849: mRNA cleavage factor complex	9.55E-04
9	GO:0010008: endosome membrane	1.22E-03
10	GO:0033179: proton-transporting V-type ATPase, V0 domain	1.27E-03
11	GO:0005776: autophagosome	1.27E-03
12	GO:0032586: protein storage vacuole membrane	1.27E-03
13	GO:0000815: ESCRT III complex	2.38E-03
14	GO:0005783: endoplasmic reticulum	3.25E-03
15	GO:0005786: signal recognition particle, endoplasmic reticulum targeting	3.71E-03
16	GO:0000326: protein storage vacuole	3.71E-03
17	GO:0005779: integral component of peroxisomal membrane	3.71E-03
18	GO:0031966: mitochondrial membrane	6.54E-03
19	GO:0016602: CCAAT-binding factor complex	6.94E-03
20	GO:0005764: lysosome	7.55E-03
21	GO:0070469: respiratory chain	1.02E-02
22	GO:0031410: cytoplasmic vesicle	1.16E-02
23	GO:0030136: clathrin-coated vesicle	1.38E-02
24	GO:0009506: plasmodesma	1.61E-02
25	GO:0031965: nuclear membrane	1.70E-02
26	GO:0000785: chromatin	1.87E-02
27	GO:0005615: extracellular space	1.94E-02
28	GO:0005778: peroxisomal membrane	2.14E-02
29	GO:0005737: cytoplasm	2.35E-02
30	GO:0005829: cytosol	2.67E-02
31	GO:0000786: nucleosome	3.22E-02
32	GO:0005794: Golgi apparatus	3.30E-02
33	GO:0016020: membrane	3.70E-02
34	GO:0005774: vacuolar membrane	3.84E-02
35	GO:0005802: trans-Golgi network	4.12E-02
36	GO:0048046: apoplast	4.16E-02