co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G75900

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0046838: phosphorylated carbohydrate dephosphorylation	0.00E+00
2	GO:0042493: response to drug	0.00E+00
3	GO:0010196: nonphotochemical quenching	4.44E-07
4	GO:0090391: granum assembly	2.44E-06
5	GO:0009773: photosynthetic electron transport in photosystem I	3.48E-06
6	GO:0042335: cuticle development	3.46E-05
7	GO:0009735: response to cytokinin	4.85E-05
8	GO:0015979: photosynthesis	7.73E-05
9	GO:0010027: thylakoid membrane organization	9.55E-05
10	GO:0080051: cutin transport	1.12E-04
11	GO:0071596: ubiquitin-dependent protein catabolic process via the N-end rule pathway	1.12E-04
12	GO:0071588: hydrogen peroxide mediated signaling pathway	1.12E-04
13	GO:0016024: CDP-diacylglycerol biosynthetic process	2.06E-04
14	GO:0015908: fatty acid transport	2.61E-04
15	GO:0043255: regulation of carbohydrate biosynthetic process	2.61E-04
16	GO:0010167: response to nitrate	3.01E-04
17	GO:0015714: phosphoenolpyruvate transport	4.32E-04
18	GO:0009650: UV protection	6.19E-04
19	GO:1901332: negative regulation of lateral root development	6.19E-04
20	GO:0006869: lipid transport	7.16E-04
21	GO:0016042: lipid catabolic process	8.18E-04
22	GO:0015713: phosphoglycerate transport	8.23E-04
23	GO:0010222: stem vascular tissue pattern formation	8.23E-04
24	GO:0045727: positive regulation of translation	8.23E-04
25	GO:0015994: chlorophyll metabolic process	8.23E-04
26	GO:0080110: sporopollenin biosynthetic process	1.04E-03
27	GO:0009697: salicylic acid biosynthetic process	1.04E-03
28	GO:0006564: L-serine biosynthetic process	1.04E-03
29	GO:0009913: epidermal cell differentiation	1.27E-03
30	GO:0006655: phosphatidylglycerol biosynthetic process	1.27E-03
31	GO:0010337: regulation of salicylic acid metabolic process	1.27E-03
32	GO:0009627: systemic acquired resistance	1.42E-03
33	GO:0015995: chlorophyll biosynthetic process	1.49E-03
34	GO:0042372: phylloquinone biosynthetic process	1.52E-03
35	GO:0010019: chloroplast-nucleus signaling pathway	1.52E-03
36	GO:1900057: positive regulation of leaf senescence	1.78E-03
37	GO:0009395: phospholipid catabolic process	1.78E-03
38	GO:0009772: photosynthetic electron transport in photosystem II	1.78E-03
39	GO:0008610: lipid biosynthetic process	2.06E-03
40	GO:0006605: protein targeting	2.06E-03
41	GO:0031540: regulation of anthocyanin biosynthetic process	2.06E-03
42	GO:0055075: potassium ion homeostasis	2.06E-03
43	GO:0032544: plastid translation	2.35E-03
44	GO:0034765: regulation of ion transmembrane transport	2.66E-03
45	GO:0080167: response to karrikin	2.88E-03
46	GO:0006032: chitin catabolic process	3.30E-03
47	GO:0009809: lignin biosynthetic process	3.59E-03
48	GO:0000038: very long-chain fatty acid metabolic process	3.65E-03
49	GO:0005983: starch catabolic process	4.00E-03
50	GO:0015706: nitrate transport	4.00E-03
51	GO:0010588: cotyledon vascular tissue pattern formation	4.36E-03
52	GO:0010229: inflorescence development	4.36E-03
53	GO:0010143: cutin biosynthetic process	4.74E-03
54	GO:0048467: gynoecium development	4.74E-03
55	GO:0009825: multidimensional cell growth	5.13E-03
56	GO:0071732: cellular response to nitric oxide	5.13E-03
57	GO:0010053: root epidermal cell differentiation	5.13E-03
58	GO:0010025: wax biosynthetic process	5.52E-03
59	GO:0042023: DNA endoreduplication	5.52E-03
60	GO:0006833: water transport	5.52E-03
61	GO:0019762: glucosinolate catabolic process	5.52E-03
62	GO:0007017: microtubule-based process	6.35E-03
63	GO:0016998: cell wall macromolecule catabolic process	6.78E-03
64	GO:0009269: response to desiccation	6.78E-03
65	GO:0030245: cellulose catabolic process	7.22E-03
66	GO:0042744: hydrogen peroxide catabolic process	7.26E-03
67	GO:0009411: response to UV	7.67E-03
68	GO:0071369: cellular response to ethylene stimulus	7.67E-03
69	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	7.67E-03
70	GO:0009306: protein secretion	8.13E-03
71	GO:0010584: pollen exine formation	8.13E-03
72	GO:0010150: leaf senescence	8.80E-03
73	GO:0042391: regulation of membrane potential	9.08E-03
74	GO:0080022: primary root development	9.08E-03
75	GO:0034220: ion transmembrane transport	9.08E-03
76	GO:0048544: recognition of pollen	1.01E-02
77	GO:0015986: ATP synthesis coupled proton transport	1.01E-02
78	GO:0006810: transport	1.06E-02
79	GO:0000302: response to reactive oxygen species	1.11E-02
80	GO:0009651: response to salt stress	1.15E-02
81	GO:0071281: cellular response to iron ion	1.22E-02
82	GO:0010252: auxin homeostasis	1.27E-02
83	GO:0009828: plant-type cell wall loosening	1.27E-02
84	GO:0071805: potassium ion transmembrane transport	1.33E-02
85	GO:0030244: cellulose biosynthetic process	1.74E-02
86	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	1.75E-02
87	GO:0010311: lateral root formation	1.80E-02
88	GO:0009737: response to abscisic acid	1.85E-02
89	GO:0009631: cold acclimation	1.93E-02
90	GO:0007568: aging	1.93E-02
91	GO:0034599: cellular response to oxidative stress	2.12E-02
92	GO:0032259: methylation	2.40E-02
93	GO:0008283: cell proliferation	2.46E-02
94	GO:0006855: drug transmembrane transport	2.75E-02
95	GO:0009664: plant-type cell wall organization	2.89E-02
96	GO:0006364: rRNA processing	3.04E-02
97	GO:0006857: oligopeptide transport	3.20E-02
98	GO:0043086: negative regulation of catalytic activity	3.43E-02
99	GO:0009409: response to cold	3.47E-02
100	GO:0009734: auxin-activated signaling pathway	3.52E-02
101	GO:0009624: response to nematode	3.91E-02
102	GO:0009742: brassinosteroid mediated signaling pathway	4.08E-02
103	GO:0009058: biosynthetic process	4.76E-02

Rank	GO Term	Adjusted P value
1	GO:0102193: protein-ribulosamine 3-kinase activity	0.00E+00
2	GO:0016788: hydrolase activity, acting on ester bonds	2.46E-06
3	GO:0004366: glycerol-3-phosphate O-acyltransferase activity	2.72E-05
4	GO:0015121: phosphoenolpyruvate:phosphate antiporter activity	1.12E-04
5	GO:0050308: sugar-phosphatase activity	1.12E-04
6	GO:0019203: carbohydrate phosphatase activity	1.12E-04
7	GO:0008909: isochorismate synthase activity	1.12E-04
8	GO:0015245: fatty acid transporter activity	1.12E-04
9	GO:0030794: (S)-coclaurine-N-methyltransferase activity	1.12E-04
10	GO:0016630: protochlorophyllide reductase activity	2.61E-04
11	GO:0047746: chlorophyllase activity	2.61E-04
12	GO:0004617: phosphoglycerate dehydrogenase activity	2.61E-04
13	GO:0005528: FK506 binding	3.73E-04
14	GO:0052689: carboxylic ester hydrolase activity	5.51E-04
15	GO:0016851: magnesium chelatase activity	6.19E-04
16	GO:0050662: coenzyme binding	7.87E-04
17	GO:0015120: phosphoglycerate transmembrane transporter activity	8.23E-04
18	GO:0003959: NADPH dehydrogenase activity	1.04E-03
19	GO:0004130: cytochrome-c peroxidase activity	1.27E-03
20	GO:0016688: L-ascorbate peroxidase activity	1.27E-03
21	GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity	1.27E-03
22	GO:2001070: starch binding	1.27E-03
23	GO:0005242: inward rectifier potassium channel activity	1.52E-03
24	GO:0042626: ATPase activity, coupled to transmembrane movement of substances	1.71E-03
25	GO:0052747: sinapyl alcohol dehydrogenase activity	2.06E-03
26	GO:0008138: protein tyrosine/serine/threonine phosphatase activity	2.66E-03
27	GO:0015112: nitrate transmembrane transporter activity	2.97E-03
28	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	3.11E-03
29	GO:0030234: enzyme regulator activity	3.30E-03
30	GO:0004568: chitinase activity	3.30E-03
31	GO:0045551: cinnamyl-alcohol dehydrogenase activity	4.00E-03
32	GO:0004565: beta-galactosidase activity	4.36E-03
33	GO:0008266: poly(U) RNA binding	4.74E-03
34	GO:0009055: electron carrier activity	5.15E-03
35	GO:0016746: transferase activity, transferring acyl groups	5.25E-03
36	GO:0102337: 3-oxo-cerotoyl-CoA synthase activity	5.52E-03
37	GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity	5.52E-03
38	GO:0102336: 3-oxo-arachidoyl-CoA synthase activity	5.52E-03
39	GO:0004176: ATP-dependent peptidase activity	6.78E-03
40	GO:0008289: lipid binding	7.16E-03
41	GO:0030570: pectate lyase activity	7.67E-03
42	GO:0008810: cellulase activity	7.67E-03
43	GO:0030551: cyclic nucleotide binding	9.08E-03
44	GO:0005249: voltage-gated potassium channel activity	9.08E-03
45	GO:0046933: proton-transporting ATP synthase activity, rotational mechanism	9.57E-03
46	GO:0042802: identical protein binding	1.12E-02
47	GO:0016791: phosphatase activity	1.27E-02
48	GO:0008168: methyltransferase activity	1.31E-02
49	GO:0005200: structural constituent of cytoskeleton	1.33E-02
50	GO:0016597: amino acid binding	1.38E-02
51	GO:0015250: water channel activity	1.44E-02
52	GO:0030247: polysaccharide binding	1.62E-02
53	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	1.74E-02
54	GO:0003993: acid phosphatase activity	2.12E-02
55	GO:0015293: symporter activity	2.67E-02
56	GO:0051287: NAD binding	2.82E-02
57	GO:0003690: double-stranded DNA binding	3.12E-02
58	GO:0016491: oxidoreductase activity	3.36E-02
59	GO:0045735: nutrient reservoir activity	3.43E-02
60	GO:0022857: transmembrane transporter activity	3.75E-02
61	GO:0000166: nucleotide binding	4.43E-02
62	GO:0019843: rRNA binding	4.59E-02
63	GO:0016829: lyase activity	4.85E-02

Rank	GO Term	Adjusted P value
1	GO:0009515: granal stacked thylakoid	0.00E+00
2	GO:0009534: chloroplast thylakoid	4.36E-13
3	GO:0009507: chloroplast	5.73E-11
4	GO:0009535: chloroplast thylakoid membrane	1.50E-09
5	GO:0048046: apoplast	2.60E-08
6	GO:0009543: chloroplast thylakoid lumen	5.68E-06
7	GO:0009579: thylakoid	1.10E-05
8	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	1.05E-04
9	GO:0046658: anchored component of plasma membrane	2.62E-04
10	GO:0005618: cell wall	4.29E-04
11	GO:0010007: magnesium chelatase complex	4.32E-04
12	GO:0009897: external side of plasma membrane	4.32E-04
13	GO:0015630: microtubule cytoskeleton	6.19E-04
14	GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1)	1.27E-03
15	GO:0009570: chloroplast stroma	1.44E-03
16	GO:0005576: extracellular region	1.94E-03
17	GO:0009505: plant-type cell wall	2.07E-03
18	GO:0009941: chloroplast envelope	2.13E-03
19	GO:0031977: thylakoid lumen	2.47E-03
20	GO:0008180: COP9 signalosome	2.66E-03
21	GO:0031225: anchored component of membrane	3.97E-03
22	GO:0005578: proteinaceous extracellular matrix	4.36E-03
23	GO:0016021: integral component of membrane	4.71E-03
24	GO:0030095: chloroplast photosystem II	4.74E-03
25	GO:0010287: plastoglobule	6.04E-03
26	GO:0009654: photosystem II oxygen evolving complex	6.35E-03
27	GO:0005886: plasma membrane	7.52E-03
28	GO:0009523: photosystem II	1.06E-02
29	GO:0019898: extrinsic component of membrane	1.06E-02
30	GO:0010319: stromule	1.33E-02
31	GO:0031969: chloroplast membrane	1.69E-02
32	GO:0000151: ubiquitin ligase complex	1.74E-02
33	GO:0019005: SCF ubiquitin ligase complex	1.74E-02
34	GO:0000502: proteasome complex	3.04E-02
35	GO:0005887: integral component of plasma membrane	3.40E-02
36	GO:0009706: chloroplast inner membrane	3.91E-02