co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G75710

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0010430: fatty acid omega-oxidation	0.00E+00
2	GO:0005996: monosaccharide metabolic process	0.00E+00
3	GO:0007638: mechanosensory behavior	0.00E+00
4	GO:0070272: proton-transporting ATP synthase complex biogenesis	0.00E+00
5	GO:0090393: sepal giant cell development	0.00E+00
6	GO:0015822: ornithine transport	0.00E+00
7	GO:0007155: cell adhesion	9.03E-06
8	GO:0006810: transport	3.01E-05
9	GO:0010583: response to cyclopentenone	3.71E-05
10	GO:0007267: cell-cell signaling	5.36E-05
11	GO:2000122: negative regulation of stomatal complex development	6.44E-05
12	GO:0006546: glycine catabolic process	6.44E-05
13	GO:0010037: response to carbon dioxide	6.44E-05
14	GO:0015976: carbon utilization	6.44E-05
15	GO:0010411: xyloglucan metabolic process	9.09E-05
16	GO:0006833: water transport	1.05E-04
17	GO:0071555: cell wall organization	1.58E-04
18	GO:0042546: cell wall biogenesis	2.75E-04
19	GO:0034220: ion transmembrane transport	2.95E-04
20	GO:0010442: guard cell morphogenesis	3.17E-04
21	GO:0071370: cellular response to gibberellin stimulus	3.17E-04
22	GO:0000066: mitochondrial ornithine transport	3.17E-04
23	GO:0019510: S-adenosylhomocysteine catabolic process	3.17E-04
24	GO:0032544: plastid translation	4.03E-04
25	GO:0042742: defense response to bacterium	5.84E-04
26	GO:0010069: zygote asymmetric cytokinesis in embryo sac	6.92E-04
27	GO:0033353: S-adenosylmethionine cycle	6.92E-04
28	GO:0060919: auxin influx	6.92E-04
29	GO:0030388: fructose 1,6-bisphosphate metabolic process	6.92E-04
30	GO:2000123: positive regulation of stomatal complex development	6.92E-04
31	GO:0010424: DNA methylation on cytosine within a CG sequence	6.92E-04
32	GO:0052541: plant-type cell wall cellulose metabolic process	6.92E-04
33	GO:0006695: cholesterol biosynthetic process	6.92E-04
34	GO:0009773: photosynthetic electron transport in photosystem I	7.70E-04
35	GO:0018119: peptidyl-cysteine S-nitrosylation	7.70E-04
36	GO:2000082: regulation of L-ascorbic acid biosynthetic process	1.12E-03
37	GO:0006000: fructose metabolic process	1.12E-03
38	GO:0019253: reductive pentose-phosphate cycle	1.12E-03
39	GO:0015840: urea transport	1.12E-03
40	GO:0006696: ergosterol biosynthetic process	1.12E-03
41	GO:0006065: UDP-glucuronate biosynthetic process	1.12E-03
42	GO:0090506: axillary shoot meristem initiation	1.12E-03
43	GO:0016051: carbohydrate biosynthetic process	1.29E-03
44	GO:0045454: cell redox homeostasis	1.38E-03
45	GO:0051016: barbed-end actin filament capping	1.61E-03
46	GO:0006168: adenine salvage	1.61E-03
47	GO:0032877: positive regulation of DNA endoreduplication	1.61E-03
48	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	1.61E-03
49	GO:0006166: purine ribonucleoside salvage	1.61E-03
50	GO:0007231: osmosensory signaling pathway	1.61E-03
51	GO:0080170: hydrogen peroxide transmembrane transport	1.61E-03
52	GO:0045490: pectin catabolic process	1.64E-03
53	GO:0080092: regulation of pollen tube growth	2.04E-03
54	GO:0033500: carbohydrate homeostasis	2.16E-03
55	GO:0031122: cytoplasmic microtubule organization	2.16E-03
56	GO:2000038: regulation of stomatal complex development	2.16E-03
57	GO:0006749: glutathione metabolic process	2.16E-03
58	GO:0019464: glycine decarboxylation via glycine cleavage system	2.16E-03
59	GO:0009765: photosynthesis, light harvesting	2.16E-03
60	GO:0006085: acetyl-CoA biosynthetic process	2.16E-03
61	GO:0045727: positive regulation of translation	2.16E-03
62	GO:0009294: DNA mediated transformation	2.22E-03
63	GO:0019722: calcium-mediated signaling	2.42E-03
64	GO:0016117: carotenoid biosynthetic process	2.62E-03
65	GO:0046785: microtubule polymerization	2.76E-03
66	GO:0016120: carotene biosynthetic process	2.76E-03
67	GO:0016123: xanthophyll biosynthetic process	2.76E-03
68	GO:0044209: AMP salvage	2.76E-03
69	GO:0032876: negative regulation of DNA endoreduplication	2.76E-03
70	GO:0010375: stomatal complex patterning	2.76E-03
71	GO:0000271: polysaccharide biosynthetic process	2.83E-03
72	GO:0045489: pectin biosynthetic process	3.05E-03
73	GO:0006796: phosphate-containing compound metabolic process	3.40E-03
74	GO:0010190: cytochrome b6f complex assembly	3.40E-03
75	GO:0010067: procambium histogenesis	4.10E-03
76	GO:0042372: phylloquinone biosynthetic process	4.10E-03
77	GO:0045926: negative regulation of growth	4.10E-03
78	GO:0009094: L-phenylalanine biosynthetic process	4.10E-03
79	GO:0017148: negative regulation of translation	4.10E-03
80	GO:1901259: chloroplast rRNA processing	4.10E-03
81	GO:0000079: regulation of cyclin-dependent protein serine/threonine kinase activity	4.10E-03
82	GO:0009955: adaxial/abaxial pattern specification	4.10E-03
83	GO:0010090: trichome morphogenesis	4.28E-03
84	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	4.68E-03
85	GO:0005975: carbohydrate metabolic process	4.74E-03
86	GO:0016126: sterol biosynthetic process	5.44E-03
87	GO:0008610: lipid biosynthetic process	5.62E-03
88	GO:0045010: actin nucleation	5.62E-03
89	GO:0048193: Golgi vesicle transport	6.44E-03
90	GO:0007389: pattern specification process	6.44E-03
91	GO:0006002: fructose 6-phosphate metabolic process	6.44E-03
92	GO:0009817: defense response to fungus, incompatible interaction	7.10E-03
93	GO:0045337: farnesyl diphosphate biosynthetic process	7.30E-03
94	GO:0033384: geranyl diphosphate biosynthetic process	7.30E-03
95	GO:0006754: ATP biosynthetic process	7.30E-03
96	GO:0048589: developmental growth	7.30E-03
97	GO:0006349: regulation of gene expression by genetic imprinting	8.21E-03
98	GO:0016573: histone acetylation	8.21E-03
99	GO:0010119: regulation of stomatal movement	8.22E-03
100	GO:0019538: protein metabolic process	9.15E-03
101	GO:0009870: defense response signaling pathway, resistance gene-dependent	9.15E-03
102	GO:0043069: negative regulation of programmed cell death	9.15E-03
103	GO:0048829: root cap development	9.15E-03
104	GO:0010192: mucilage biosynthetic process	9.15E-03
105	GO:0000272: polysaccharide catabolic process	1.01E-02
106	GO:0010216: maintenance of DNA methylation	1.01E-02
107	GO:0006816: calcium ion transport	1.01E-02
108	GO:0006839: mitochondrial transport	1.03E-02
109	GO:0006631: fatty acid metabolic process	1.07E-02
110	GO:0009409: response to cold	1.10E-02
111	GO:0030036: actin cytoskeleton organization	1.22E-02
112	GO:0050826: response to freezing	1.22E-02
113	GO:0009725: response to hormone	1.22E-02
114	GO:0006094: gluconeogenesis	1.22E-02
115	GO:0009767: photosynthetic electron transport chain	1.22E-02
116	GO:0005986: sucrose biosynthetic process	1.22E-02
117	GO:0010207: photosystem II assembly	1.33E-02
118	GO:0010020: chloroplast fission	1.33E-02
119	GO:0010223: secondary shoot formation	1.33E-02
120	GO:0009658: chloroplast organization	1.43E-02
121	GO:0009825: multidimensional cell growth	1.44E-02
122	GO:0005985: sucrose metabolic process	1.44E-02
123	GO:0046686: response to cadmium ion	1.44E-02
124	GO:0070588: calcium ion transmembrane transport	1.44E-02
125	GO:0006636: unsaturated fatty acid biosynthetic process	1.56E-02
126	GO:0009833: plant-type primary cell wall biogenesis	1.56E-02
127	GO:0006071: glycerol metabolic process	1.56E-02
128	GO:0006338: chromatin remodeling	1.67E-02
129	GO:0007010: cytoskeleton organization	1.67E-02
130	GO:0010026: trichome differentiation	1.80E-02
131	GO:0007017: microtubule-based process	1.80E-02
132	GO:0003333: amino acid transmembrane transport	1.92E-02
133	GO:0061077: chaperone-mediated protein folding	1.92E-02
134	GO:0006730: one-carbon metabolic process	2.05E-02
135	GO:0042545: cell wall modification	2.18E-02
136	GO:0001944: vasculature development	2.18E-02
137	GO:0006284: base-excision repair	2.31E-02
138	GO:0010089: xylem development	2.31E-02
139	GO:0009742: brassinosteroid mediated signaling pathway	2.38E-02
140	GO:0055114: oxidation-reduction process	2.51E-02
141	GO:0080022: primary root development	2.59E-02
142	GO:0010051: xylem and phloem pattern formation	2.59E-02
143	GO:0010087: phloem or xylem histogenesis	2.59E-02
144	GO:0042631: cellular response to water deprivation	2.59E-02
145	GO:0055085: transmembrane transport	2.72E-02
146	GO:0009741: response to brassinosteroid	2.73E-02
147	GO:0016042: lipid catabolic process	2.96E-02
148	GO:0019252: starch biosynthetic process	3.02E-02
149	GO:0071554: cell wall organization or biogenesis	3.17E-02
150	GO:0007264: small GTPase mediated signal transduction	3.32E-02
151	GO:1901657: glycosyl compound metabolic process	3.48E-02
152	GO:0006633: fatty acid biosynthetic process	3.53E-02
153	GO:0009788: negative regulation of abscisic acid-activated signaling pathway	4.29E-02
154	GO:0009617: response to bacterium	4.61E-02
155	GO:0030244: cellulose biosynthetic process	4.98E-02
156	GO:0018298: protein-chromophore linkage	4.98E-02

Rank	GO Term	Adjusted P value
1	GO:0045435: lycopene epsilon cyclase activity	0.00E+00
2	GO:0050613: delta14-sterol reductase activity	0.00E+00
3	GO:0050278: sedoheptulose-bisphosphatase activity	0.00E+00
4	GO:0046905: phytoene synthase activity	0.00E+00
5	GO:0008756: o-succinylbenzoate-CoA ligase activity	0.00E+00
6	GO:0016767: geranylgeranyl-diphosphate geranylgeranyltransferase activity	0.00E+00
7	GO:0051920: peroxiredoxin activity	2.83E-08
8	GO:0016209: antioxidant activity	1.01E-07
9	GO:0016762: xyloglucan:xyloglucosyl transferase activity	3.25E-05
10	GO:0016798: hydrolase activity, acting on glycosyl bonds	9.09E-05
11	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	1.93E-04
12	GO:0080132: fatty acid alpha-hydroxylase activity	3.17E-04
13	GO:0008568: microtubule-severing ATPase activity	3.17E-04
14	GO:0051996: squalene synthase activity	3.17E-04
15	GO:0010313: phytochrome binding	3.17E-04
16	GO:0030797: 24-methylenesterol C-methyltransferase activity	3.17E-04
17	GO:0047259: glucomannan 4-beta-mannosyltransferase activity	3.17E-04
18	GO:0004560: alpha-L-fucosidase activity	3.17E-04
19	GO:0004013: adenosylhomocysteinase activity	3.17E-04
20	GO:0046593: mandelonitrile lyase activity	6.92E-04
21	GO:0000064: L-ornithine transmembrane transporter activity	6.92E-04
22	GO:0015250: water channel activity	6.92E-04
23	GO:0008825: cyclopropane-fatty-acyl-phospholipid synthase activity	6.92E-04
24	GO:0008967: phosphoglycolate phosphatase activity	6.92E-04
25	GO:0004310: farnesyl-diphosphate farnesyltransferase activity	6.92E-04
26	GO:0042389: omega-3 fatty acid desaturase activity	6.92E-04
27	GO:0004618: phosphoglycerate kinase activity	6.92E-04
28	GO:0010297: heteropolysaccharide binding	6.92E-04
29	GO:0004047: aminomethyltransferase activity	6.92E-04
30	GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity	6.92E-04
31	GO:0005089: Rho guanyl-nucleotide exchange factor activity	7.70E-04
32	GO:0004089: carbonate dehydratase activity	9.95E-04
33	GO:0003913: DNA photolyase activity	1.12E-03
34	GO:0005504: fatty acid binding	1.12E-03
35	GO:0004148: dihydrolipoyl dehydrogenase activity	1.12E-03
36	GO:0003979: UDP-glucose 6-dehydrogenase activity	1.12E-03
37	GO:0005528: FK506 binding	1.54E-03
38	GO:0048027: mRNA 5'-UTR binding	1.61E-03
39	GO:0003999: adenine phosphoribosyltransferase activity	1.61E-03
40	GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor	1.61E-03
41	GO:0003878: ATP citrate synthase activity	1.61E-03
42	GO:0004375: glycine dehydrogenase (decarboxylating) activity	1.61E-03
43	GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity	2.04E-03
44	GO:0010328: auxin influx transmembrane transporter activity	2.16E-03
45	GO:0045430: chalcone isomerase activity	2.16E-03
46	GO:0015204: urea transmembrane transporter activity	2.16E-03
47	GO:0047769: arogenate dehydratase activity	2.16E-03
48	GO:0004664: prephenate dehydratase activity	2.16E-03
49	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	2.16E-03
50	GO:0030570: pectate lyase activity	2.22E-03
51	GO:0008725: DNA-3-methyladenine glycosylase activity	2.76E-03
52	GO:0004601: peroxidase activity	3.20E-03
53	GO:0016208: AMP binding	3.40E-03
54	GO:0042578: phosphoric ester hydrolase activity	3.40E-03
55	GO:0016462: pyrophosphatase activity	3.40E-03
56	GO:0019901: protein kinase binding	3.51E-03
57	GO:0030599: pectinesterase activity	3.79E-03
58	GO:0016832: aldehyde-lyase activity	4.10E-03
59	GO:0051753: mannan synthase activity	4.10E-03
60	GO:0003886: DNA (cytosine-5-)-methyltransferase activity	4.10E-03
61	GO:0004723: calcium-dependent protein serine/threonine phosphatase activity	4.10E-03
62	GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity	4.10E-03
63	GO:0016759: cellulose synthase activity	4.56E-03
64	GO:0009881: photoreceptor activity	4.84E-03
65	GO:0016722: oxidoreductase activity, oxidizing metal ions	4.84E-03
66	GO:0005200: structural constituent of cytoskeleton	4.84E-03
67	GO:0004427: inorganic diphosphatase activity	4.84E-03
68	GO:0052689: carboxylic ester hydrolase activity	5.18E-03
69	GO:0016758: transferase activity, transferring hexosyl groups	5.26E-03
70	GO:0019843: rRNA binding	5.45E-03
71	GO:0004564: beta-fructofuranosidase activity	5.62E-03
72	GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water	6.44E-03
73	GO:0008889: glycerophosphodiester phosphodiesterase activity	7.30E-03
74	GO:0008553: hydrogen-exporting ATPase activity, phosphorylative mechanism	7.30E-03
75	GO:0004337: geranyltranstransferase activity	7.30E-03
76	GO:0004575: sucrose alpha-glucosidase activity	8.21E-03
77	GO:0004860: protein kinase inhibitor activity	1.01E-02
78	GO:0004161: dimethylallyltranstransferase activity	1.01E-02
79	GO:0005516: calmodulin binding	1.12E-02
80	GO:0004565: beta-galactosidase activity	1.22E-02
81	GO:0031072: heat shock protein binding	1.22E-02
82	GO:0005262: calcium channel activity	1.22E-02
83	GO:0008083: growth factor activity	1.33E-02
84	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	1.36E-02
85	GO:0051287: NAD binding	1.41E-02
86	GO:0016788: hydrolase activity, acting on ester bonds	1.47E-02
87	GO:0004857: enzyme inhibitor activity	1.67E-02
88	GO:0045330: aspartyl esterase activity	1.74E-02
89	GO:0045735: nutrient reservoir activity	1.86E-02
90	GO:0033612: receptor serine/threonine kinase binding	1.92E-02
91	GO:0004650: polygalacturonase activity	2.05E-02
92	GO:0016760: cellulose synthase (UDP-forming) activity	2.18E-02
93	GO:0003756: protein disulfide isomerase activity	2.31E-02
94	GO:0005102: receptor binding	2.45E-02
95	GO:0016757: transferase activity, transferring glycosyl groups	2.61E-02
96	GO:0050662: coenzyme binding	2.88E-02
97	GO:0004872: receptor activity	3.02E-02
98	GO:0003924: GTPase activity	3.07E-02
99	GO:0048038: quinone binding	3.17E-02
100	GO:0005507: copper ion binding	3.22E-02
101	GO:0004518: nuclease activity	3.32E-02
102	GO:0009055: electron carrier activity	3.35E-02
103	GO:0000156: phosphorelay response regulator activity	3.48E-02
104	GO:0051015: actin filament binding	3.48E-02
105	GO:0004672: protein kinase activity	3.54E-02
106	GO:0008483: transaminase activity	3.80E-02
107	GO:0016597: amino acid binding	3.96E-02
108	GO:0016413: O-acetyltransferase activity	3.96E-02
109	GO:0009931: calcium-dependent protein serine/threonine kinase activity	4.46E-02
110	GO:0004683: calmodulin-dependent protein kinase activity	4.63E-02
111	GO:0102483: scopolin beta-glucosidase activity	4.63E-02
112	GO:0005509: calcium ion binding	4.76E-02
113	GO:0008757: S-adenosylmethionine-dependent methyltransferase activity	4.80E-02

Rank	GO Term	Adjusted P value
1	GO:0009571: proplastid stroma	0.00E+00
2	GO:0048046: apoplast	1.00E-13
3	GO:0009507: chloroplast	5.93E-08
4	GO:0005576: extracellular region	8.16E-08
5	GO:0009941: chloroplast envelope	1.41E-07
6	GO:0009535: chloroplast thylakoid membrane	2.21E-07
7	GO:0009579: thylakoid	4.63E-07
8	GO:0009543: chloroplast thylakoid lumen	1.33E-06
9	GO:0009570: chloroplast stroma	1.46E-06
10	GO:0009505: plant-type cell wall	2.53E-06
11	GO:0005618: cell wall	6.74E-06
12	GO:0031225: anchored component of membrane	1.20E-05
13	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	1.80E-05
14	GO:0009534: chloroplast thylakoid	2.82E-05
15	GO:0010319: stromule	5.36E-05
16	GO:0009344: nitrite reductase complex [NAD(P)H]	3.17E-04
17	GO:0005886: plasma membrane	4.36E-04
18	GO:0046658: anchored component of plasma membrane	5.25E-04
19	GO:0042170: plastid membrane	6.92E-04
20	GO:0000427: plastid-encoded plastid RNA polymerase complex	6.92E-04
21	GO:0005853: eukaryotic translation elongation factor 1 complex	1.12E-03
22	GO:0030095: chloroplast photosystem II	1.12E-03
23	GO:0005960: glycine cleavage complex	1.61E-03
24	GO:0009346: citrate lyase complex	1.61E-03
25	GO:0005775: vacuolar lumen	1.61E-03
26	GO:0009654: photosystem II oxygen evolving complex	1.70E-03
27	GO:0016020: membrane	2.83E-03
28	GO:0010168: ER body	3.40E-03
29	GO:0019898: extrinsic component of membrane	3.51E-03
30	GO:0000139: Golgi membrane	3.70E-03
31	GO:0042807: central vacuole	4.84E-03
32	GO:0005778: peroxisomal membrane	4.84E-03
33	GO:0009533: chloroplast stromal thylakoid	4.84E-03
34	GO:0000123: histone acetyltransferase complex	4.84E-03
35	GO:0010287: plastoglobule	5.08E-03
36	GO:0000326: protein storage vacuole	6.44E-03
37	GO:0045298: tubulin complex	7.30E-03
38	GO:0005763: mitochondrial small ribosomal subunit	7.30E-03
39	GO:0000325: plant-type vacuole	8.22E-03
40	GO:0016324: apical plasma membrane	9.15E-03
41	GO:0055028: cortical microtubule	9.15E-03
42	GO:0031977: thylakoid lumen	1.07E-02
43	GO:0009508: plastid chromosome	1.22E-02
44	GO:0005773: vacuole	1.27E-02
45	GO:0005887: integral component of plasma membrane	1.28E-02
46	GO:0030176: integral component of endoplasmic reticulum membrane	1.44E-02
47	GO:0005875: microtubule associated complex	1.56E-02
48	GO:0005794: Golgi apparatus	1.71E-02
49	GO:0042651: thylakoid membrane	1.80E-02
50	GO:0031969: chloroplast membrane	1.88E-02
51	GO:0009532: plastid stroma	1.92E-02
52	GO:0009706: chloroplast inner membrane	2.24E-02
53	GO:0009506: plasmodesma	2.84E-02
54	GO:0009295: nucleoid	3.80E-02
55	GO:0005802: trans-Golgi network	3.82E-02
56	GO:0005615: extracellular space	4.33E-02