co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G75690

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0090071: negative regulation of ribosome biogenesis	0.00E+00
2	GO:0033231: carbohydrate export	0.00E+00
3	GO:2000042: negative regulation of double-strand break repair via homologous recombination	0.00E+00
4	GO:0007172: signal complex assembly	0.00E+00
5	GO:0052865: 1-deoxy-D-xylulose 5-phosphate biosynthetic process	0.00E+00
6	GO:0090627: plant epidermal cell differentiation	0.00E+00
7	GO:1904526: regulation of microtubule binding	0.00E+00
8	GO:2000505: regulation of energy homeostasis	0.00E+00
9	GO:0045014: negative regulation of transcription by glucose	0.00E+00
10	GO:0015995: chlorophyll biosynthetic process	9.50E-10
11	GO:0090391: granum assembly	8.46E-06
12	GO:0051513: regulation of monopolar cell growth	1.93E-05
13	GO:0010207: photosystem II assembly	3.39E-05
14	GO:0015979: photosynthesis	8.55E-05
15	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	1.02E-04
16	GO:0009926: auxin polar transport	1.07E-04
17	GO:0009664: plant-type cell wall organization	1.60E-04
18	GO:0015755: fructose transport	2.22E-04
19	GO:0000476: maturation of 4.5S rRNA	2.22E-04
20	GO:0000967: rRNA 5'-end processing	2.22E-04
21	GO:0031338: regulation of vesicle fusion	2.22E-04
22	GO:0043007: maintenance of rDNA	2.22E-04
23	GO:0010028: xanthophyll cycle	2.22E-04
24	GO:0034337: RNA folding	2.22E-04
25	GO:1902334: fructose export from vacuole to cytoplasm	2.22E-04
26	GO:0009828: plant-type cell wall loosening	2.85E-04
27	GO:0006783: heme biosynthetic process	2.91E-04
28	GO:0006782: protoporphyrinogen IX biosynthetic process	4.05E-04
29	GO:0006898: receptor-mediated endocytosis	4.95E-04
30	GO:0010541: acropetal auxin transport	4.95E-04
31	GO:0001736: establishment of planar polarity	4.95E-04
32	GO:0016122: xanthophyll metabolic process	4.95E-04
33	GO:0034470: ncRNA processing	4.95E-04
34	GO:0016024: CDP-diacylglycerol biosynthetic process	5.37E-04
35	GO:0045490: pectin catabolic process	7.59E-04
36	GO:0010160: formation of animal organ boundary	8.05E-04
37	GO:0016045: detection of bacterium	8.05E-04
38	GO:0010359: regulation of anion channel activity	8.05E-04
39	GO:0080055: low-affinity nitrate transport	8.05E-04
40	GO:0045493: xylan catabolic process	8.05E-04
41	GO:0090630: activation of GTPase activity	8.05E-04
42	GO:0080170: hydrogen peroxide transmembrane transport	1.15E-03
43	GO:0043481: anthocyanin accumulation in tissues in response to UV light	1.15E-03
44	GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity	1.15E-03
45	GO:1901332: negative regulation of lateral root development	1.15E-03
46	GO:0048443: stamen development	1.46E-03
47	GO:0009734: auxin-activated signaling pathway	1.47E-03
48	GO:0030104: water homeostasis	1.53E-03
49	GO:0015994: chlorophyll metabolic process	1.53E-03
50	GO:0042335: cuticle development	1.71E-03
51	GO:0080022: primary root development	1.71E-03
52	GO:0010305: leaf vascular tissue pattern formation	1.84E-03
53	GO:0009958: positive gravitropism	1.84E-03
54	GO:0010438: cellular response to sulfur starvation	1.95E-03
55	GO:0009228: thiamine biosynthetic process	2.40E-03
56	GO:0009913: epidermal cell differentiation	2.40E-03
57	GO:0006655: phosphatidylglycerol biosynthetic process	2.40E-03
58	GO:0060918: auxin transport	2.40E-03
59	GO:0009759: indole glucosinolate biosynthetic process	2.40E-03
60	GO:0006751: glutathione catabolic process	2.40E-03
61	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	2.40E-03
62	GO:0009733: response to auxin	2.75E-03
63	GO:1901259: chloroplast rRNA processing	2.89E-03
64	GO:0045926: negative regulation of growth	2.89E-03
65	GO:0017148: negative regulation of translation	2.89E-03
66	GO:0009942: longitudinal axis specification	2.89E-03
67	GO:0010196: nonphotochemical quenching	3.40E-03
68	GO:0050829: defense response to Gram-negative bacterium	3.40E-03
69	GO:1900056: negative regulation of leaf senescence	3.40E-03
70	GO:0010411: xyloglucan metabolic process	3.84E-03
71	GO:0046620: regulation of organ growth	3.94E-03
72	GO:0010492: maintenance of shoot apical meristem identity	3.94E-03
73	GO:0007623: circadian rhythm	4.26E-03
74	GO:0010311: lateral root formation	4.46E-03
75	GO:0007389: pattern specification process	4.51E-03
76	GO:0048507: meristem development	5.11E-03
77	GO:0010206: photosystem II repair	5.11E-03
78	GO:0048589: developmental growth	5.11E-03
79	GO:0009245: lipid A biosynthetic process	5.11E-03
80	GO:0006865: amino acid transport	5.14E-03
81	GO:0009638: phototropism	5.74E-03
82	GO:0006995: cellular response to nitrogen starvation	6.38E-03
83	GO:0048829: root cap development	6.38E-03
84	GO:0006949: syncytium formation	6.38E-03
85	GO:0009773: photosynthetic electron transport in photosystem I	7.06E-03
86	GO:0052544: defense response by callose deposition in cell wall	7.06E-03
87	GO:1903507: negative regulation of nucleic acid-templated transcription	7.06E-03
88	GO:0009750: response to fructose	7.06E-03
89	GO:0048765: root hair cell differentiation	7.06E-03
90	GO:0046856: phosphatidylinositol dephosphorylation	7.06E-03
91	GO:0010015: root morphogenesis	7.06E-03
92	GO:0009826: unidimensional cell growth	7.08E-03
93	GO:0009735: response to cytokinin	7.65E-03
94	GO:0002213: defense response to insect	7.76E-03
95	GO:0010152: pollen maturation	7.76E-03
96	GO:0008361: regulation of cell size	7.76E-03
97	GO:0010588: cotyledon vascular tissue pattern formation	8.48E-03
98	GO:0009785: blue light signaling pathway	8.48E-03
99	GO:0030048: actin filament-based movement	8.48E-03
100	GO:0006094: gluconeogenesis	8.48E-03
101	GO:0010540: basipetal auxin transport	9.23E-03
102	GO:0009934: regulation of meristem structural organization	9.23E-03
103	GO:0010143: cutin biosynthetic process	9.23E-03
104	GO:0010030: positive regulation of seed germination	1.00E-02
105	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	1.02E-02
106	GO:0000162: tryptophan biosynthetic process	1.08E-02
107	GO:0051017: actin filament bundle assembly	1.16E-02
108	GO:2000377: regulation of reactive oxygen species metabolic process	1.16E-02
109	GO:0007017: microtubule-based process	1.24E-02
110	GO:0016114: terpenoid biosynthetic process	1.33E-02
111	GO:0003333: amino acid transmembrane transport	1.33E-02
112	GO:0016998: cell wall macromolecule catabolic process	1.33E-02
113	GO:0051260: protein homooligomerization	1.33E-02
114	GO:0048511: rhythmic process	1.33E-02
115	GO:0009624: response to nematode	1.34E-02
116	GO:2000022: regulation of jasmonic acid mediated signaling pathway	1.42E-02
117	GO:0070417: cellular response to cold	1.70E-02
118	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	1.70E-02
119	GO:0034220: ion transmembrane transport	1.79E-02
120	GO:0010087: phloem or xylem histogenesis	1.79E-02
121	GO:0042631: cellular response to water deprivation	1.79E-02
122	GO:0071472: cellular response to salt stress	1.89E-02
123	GO:0009741: response to brassinosteroid	1.89E-02
124	GO:0042752: regulation of circadian rhythm	1.99E-02
125	GO:0009646: response to absence of light	1.99E-02
126	GO:0048825: cotyledon development	2.09E-02
127	GO:0000302: response to reactive oxygen species	2.19E-02
128	GO:0010583: response to cyclopentenone	2.30E-02
129	GO:0016032: viral process	2.30E-02
130	GO:0030163: protein catabolic process	2.41E-02
131	GO:0007275: multicellular organism development	2.43E-02
132	GO:0010252: auxin homeostasis	2.52E-02
133	GO:0009639: response to red or far red light	2.52E-02
134	GO:0071805: potassium ion transmembrane transport	2.63E-02
135	GO:0006470: protein dephosphorylation	2.65E-02
136	GO:0010027: thylakoid membrane organization	2.85E-02
137	GO:0009627: systemic acquired resistance	3.09E-02
138	GO:0009416: response to light stimulus	3.29E-02
139	GO:0000160: phosphorelay signal transduction system	3.57E-02
140	GO:0010218: response to far red light	3.70E-02
141	GO:0048527: lateral root development	3.82E-02
142	GO:0007568: aging	3.82E-02
143	GO:0009637: response to blue light	4.08E-02
144	GO:0034599: cellular response to oxidative stress	4.21E-02
145	GO:0080167: response to karrikin	4.42E-02
146	GO:0030001: metal ion transport	4.47E-02
147	GO:0006631: fatty acid metabolic process	4.61E-02
148	GO:0009640: photomorphogenesis	4.88E-02
149	GO:0010114: response to red light	4.88E-02

Rank	GO Term	Adjusted P value
1	GO:0046422: violaxanthin de-epoxidase activity	0.00E+00
2	GO:0004853: uroporphyrinogen decarboxylase activity	0.00E+00
3	GO:0061634: alpha-D-xyloside xylohydrolase	0.00E+00
4	GO:0080176: xyloglucan 1,6-alpha-xylosidase activity	0.00E+00
5	GO:0102193: protein-ribulosamine 3-kinase activity	0.00E+00
6	GO:0015284: fructose uniporter activity	0.00E+00
7	GO:0046406: magnesium protoporphyrin IX methyltransferase activity	0.00E+00
8	GO:0016851: magnesium chelatase activity	1.93E-05
9	GO:0010011: auxin binding	3.53E-05
10	GO:0030570: pectate lyase activity	1.02E-04
11	GO:0033946: xyloglucan-specific endo-beta-1,4-glucanase activity	2.22E-04
12	GO:0005353: fructose transmembrane transporter activity	4.95E-04
13	GO:0016868: intramolecular transferase activity, phosphotransferases	4.95E-04
14	GO:0003839: gamma-glutamylcyclotransferase activity	4.95E-04
15	GO:0008661: 1-deoxy-D-xylulose-5-phosphate synthase activity	4.95E-04
16	GO:0016829: lyase activity	5.23E-04
17	GO:0010329: auxin efflux transmembrane transporter activity	6.09E-04
18	GO:0090729: toxin activity	8.05E-04
19	GO:0080054: low-affinity nitrate transmembrane transporter activity	8.05E-04
20	GO:0043023: ribosomal large subunit binding	1.15E-03
21	GO:0010328: auxin influx transmembrane transporter activity	1.53E-03
22	GO:0009044: xylan 1,4-beta-xylosidase activity	1.53E-03
23	GO:0003841: 1-acylglycerol-3-phosphate O-acyltransferase activity	1.53E-03
24	GO:0046556: alpha-L-arabinofuranosidase activity	1.53E-03
25	GO:0017137: Rab GTPase binding	1.95E-03
26	GO:0004130: cytochrome-c peroxidase activity	2.40E-03
27	GO:0004366: glycerol-3-phosphate O-acyltransferase activity	2.40E-03
28	GO:0042578: phosphoric ester hydrolase activity	2.40E-03
29	GO:0031177: phosphopantetheine binding	2.40E-03
30	GO:0034485: phosphatidylinositol-3,4,5-trisphosphate 5-phosphatase activity	2.40E-03
31	GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity	2.40E-03
32	GO:0004332: fructose-bisphosphate aldolase activity	2.40E-03
33	GO:0016791: phosphatase activity	2.74E-03
34	GO:0016832: aldehyde-lyase activity	2.89E-03
35	GO:0004017: adenylate kinase activity	2.89E-03
36	GO:0000035: acyl binding	2.89E-03
37	GO:0005515: protein binding	3.69E-03
38	GO:0000036: ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process	3.94E-03
39	GO:0005096: GTPase activator activity	4.46E-03
40	GO:0009672: auxin:proton symporter activity	5.74E-03
41	GO:0004712: protein serine/threonine/tyrosine kinase activity	5.87E-03
42	GO:0008794: arsenate reductase (glutaredoxin) activity	7.06E-03
43	GO:0047372: acylglycerol lipase activity	7.06E-03
44	GO:0004439: phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity	7.76E-03
45	GO:0003774: motor activity	9.23E-03
46	GO:0051119: sugar transmembrane transporter activity	1.00E-02
47	GO:0015171: amino acid transmembrane transporter activity	1.04E-02
48	GO:0003714: transcription corepressor activity	1.16E-02
49	GO:0005528: FK506 binding	1.16E-02
50	GO:0015079: potassium ion transmembrane transporter activity	1.24E-02
51	GO:0033612: receptor serine/threonine kinase binding	1.33E-02
52	GO:0016746: transferase activity, transferring acyl groups	1.38E-02
53	GO:0019843: rRNA binding	1.67E-02
54	GO:0046910: pectinesterase inhibitor activity	2.16E-02
55	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	2.16E-02
56	GO:0016762: xyloglucan:xyloglucosyl transferase activity	2.19E-02
57	GO:0004518: nuclease activity	2.30E-02
58	GO:0000156: phosphorelay response regulator activity	2.41E-02
59	GO:0051015: actin filament binding	2.41E-02
60	GO:0008289: lipid binding	2.43E-02
61	GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity	2.63E-02
62	GO:0005200: structural constituent of cytoskeleton	2.63E-02
63	GO:0016301: kinase activity	2.75E-02
64	GO:0015250: water channel activity	2.85E-02
65	GO:0042626: ATPase activity, coupled to transmembrane movement of substances	2.94E-02
66	GO:0016168: chlorophyll binding	2.97E-02
67	GO:0016798: hydrolase activity, acting on glycosyl bonds	3.20E-02
68	GO:0008236: serine-type peptidase activity	3.32E-02
69	GO:0016788: hydrolase activity, acting on ester bonds	3.65E-02
70	GO:0016614: oxidoreductase activity, acting on CH-OH group of donors	3.82E-02
71	GO:0003746: translation elongation factor activity	4.08E-02
72	GO:0052689: carboxylic ester hydrolase activity	4.88E-02
73	GO:0004185: serine-type carboxypeptidase activity	4.88E-02

Rank	GO Term	Adjusted P value
1	GO:0043224: nuclear SCF ubiquitin ligase complex	0.00E+00
2	GO:0098572: stromal side of plastid thylakoid membrane	0.00E+00
3	GO:0009507: chloroplast	1.88E-16
4	GO:0009534: chloroplast thylakoid	4.68E-14
5	GO:0009570: chloroplast stroma	9.29E-11
6	GO:0009543: chloroplast thylakoid lumen	3.62E-10
7	GO:0009535: chloroplast thylakoid membrane	8.01E-10
8	GO:0009941: chloroplast envelope	8.16E-07
9	GO:0031977: thylakoid lumen	5.57E-06
10	GO:0010007: magnesium chelatase complex	8.46E-06
11	GO:0009579: thylakoid	2.99E-05
12	GO:0009515: granal stacked thylakoid	2.22E-04
13	GO:0043674: columella	2.22E-04
14	GO:0030093: chloroplast photosystem I	4.95E-04
15	GO:0009508: plastid chromosome	6.09E-04
16	GO:0030095: chloroplast photosystem II	6.86E-04
17	GO:0016020: membrane	9.86E-04
18	GO:0009531: secondary cell wall	1.15E-03
19	GO:0042646: plastid nucleoid	1.15E-03
20	GO:0005618: cell wall	1.61E-03
21	GO:0009522: photosystem I	1.97E-03
22	GO:0016363: nuclear matrix	2.89E-03
23	GO:0009295: nucleoid	2.91E-03
24	GO:0042807: central vacuole	3.40E-03
25	GO:0009986: cell surface	3.40E-03
26	GO:0009533: chloroplast stromal thylakoid	3.40E-03
27	GO:0009505: plant-type cell wall	3.42E-03
28	GO:0042644: chloroplast nucleoid	5.11E-03
29	GO:0045298: tubulin complex	5.11E-03
30	GO:0016459: myosin complex	6.38E-03
31	GO:0032040: small-subunit processome	7.76E-03
32	GO:0016602: CCAAT-binding factor complex	8.48E-03
33	GO:0031969: chloroplast membrane	9.77E-03
34	GO:0009654: photosystem II oxygen evolving complex	1.24E-02
35	GO:0015629: actin cytoskeleton	1.51E-02
36	GO:0010287: plastoglobule	1.59E-02
37	GO:0009523: photosystem II	2.09E-02
38	GO:0019898: extrinsic component of membrane	2.09E-02
39	GO:0005576: extracellular region	2.19E-02
40	GO:0009705: plant-type vacuole membrane	2.31E-02
41	GO:0071944: cell periphery	2.41E-02
42	GO:0005886: plasma membrane	2.94E-02
43	GO:0000325: plant-type vacuole	3.82E-02