co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G75460

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:2000505: regulation of energy homeostasis	0.00E+00
2	GO:0009773: photosynthetic electron transport in photosystem I	1.71E-10
3	GO:0015979: photosynthesis	3.16E-07
4	GO:0080170: hydrogen peroxide transmembrane transport	5.42E-06
5	GO:0010207: photosystem II assembly	6.46E-06
6	GO:0034220: ion transmembrane transport	3.22E-05
7	GO:0009772: photosynthetic electron transport in photosystem II	4.92E-05
8	GO:0010027: thylakoid membrane organization	8.92E-05
9	GO:1904966: positive regulation of vitamin E biosynthetic process	1.08E-04
10	GO:1904964: positive regulation of phytol biosynthetic process	1.08E-04
11	GO:0006106: fumarate metabolic process	1.08E-04
12	GO:0010205: photoinhibition	1.21E-04
13	GO:0035304: regulation of protein dephosphorylation	2.52E-04
14	GO:0043255: regulation of carbohydrate biosynthetic process	2.52E-04
15	GO:0010115: regulation of abscisic acid biosynthetic process	2.52E-04
16	GO:0001736: establishment of planar polarity	2.52E-04
17	GO:1902326: positive regulation of chlorophyll biosynthetic process	2.52E-04
18	GO:0006833: water transport	3.21E-04
19	GO:0090391: granum assembly	4.19E-04
20	GO:0006518: peptide metabolic process	4.19E-04
21	GO:0016050: vesicle organization	4.19E-04
22	GO:1901332: negative regulation of lateral root development	6.01E-04
23	GO:0071484: cellular response to light intensity	6.01E-04
24	GO:0042335: cuticle development	6.53E-04
25	GO:0030104: water homeostasis	7.98E-04
26	GO:0010109: regulation of photosynthesis	7.98E-04
27	GO:0009765: photosynthesis, light harvesting	7.98E-04
28	GO:0045727: positive regulation of translation	7.98E-04
29	GO:0009651: response to salt stress	9.19E-04
30	GO:0006633: fatty acid biosynthetic process	1.06E-03
31	GO:0009913: epidermal cell differentiation	1.23E-03
32	GO:0006086: acetyl-CoA biosynthetic process from pyruvate	1.23E-03
33	GO:0010337: regulation of salicylic acid metabolic process	1.23E-03
34	GO:0006561: proline biosynthetic process	1.23E-03
35	GO:0042549: photosystem II stabilization	1.23E-03
36	GO:0015995: chlorophyll biosynthetic process	1.43E-03
37	GO:0009735: response to cytokinin	1.64E-03
38	GO:0010311: lateral root formation	1.66E-03
39	GO:1900057: positive regulation of leaf senescence	1.73E-03
40	GO:0009395: phospholipid catabolic process	1.73E-03
41	GO:0010196: nonphotochemical quenching	1.73E-03
42	GO:0006605: protein targeting	2.00E-03
43	GO:0010492: maintenance of shoot apical meristem identity	2.00E-03
44	GO:0008610: lipid biosynthetic process	2.00E-03
45	GO:0032544: plastid translation	2.28E-03
46	GO:0010206: photosystem II repair	2.57E-03
47	GO:0048507: meristem development	2.57E-03
48	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	2.83E-03
49	GO:0006032: chitin catabolic process	3.20E-03
50	GO:0009688: abscisic acid biosynthetic process	3.20E-03
51	GO:0048829: root cap development	3.20E-03
52	GO:0019684: photosynthesis, light reaction	3.53E-03
53	GO:0009750: response to fructose	3.53E-03
54	GO:0048765: root hair cell differentiation	3.53E-03
55	GO:0046856: phosphatidylinositol dephosphorylation	3.53E-03
56	GO:0000038: very long-chain fatty acid metabolic process	3.53E-03
57	GO:0016024: CDP-diacylglycerol biosynthetic process	3.87E-03
58	GO:0010628: positive regulation of gene expression	4.23E-03
59	GO:0006108: malate metabolic process	4.23E-03
60	GO:0010143: cutin biosynthetic process	4.59E-03
61	GO:0009624: response to nematode	4.86E-03
62	GO:0071732: cellular response to nitric oxide	4.96E-03
63	GO:0010030: positive regulation of seed germination	4.96E-03
64	GO:0010053: root epidermal cell differentiation	4.96E-03
65	GO:0009825: multidimensional cell growth	4.96E-03
66	GO:0010167: response to nitrate	4.96E-03
67	GO:0008152: metabolic process	5.02E-03
68	GO:0010025: wax biosynthetic process	5.35E-03
69	GO:0006636: unsaturated fatty acid biosynthetic process	5.35E-03
70	GO:2000377: regulation of reactive oxygen species metabolic process	5.75E-03
71	GO:0019953: sexual reproduction	6.15E-03
72	GO:0007017: microtubule-based process	6.15E-03
73	GO:0003333: amino acid transmembrane transport	6.56E-03
74	GO:0016998: cell wall macromolecule catabolic process	6.56E-03
75	GO:0009269: response to desiccation	6.56E-03
76	GO:0009734: auxin-activated signaling pathway	6.85E-03
77	GO:0035428: hexose transmembrane transport	6.99E-03
78	GO:0071369: cellular response to ethylene stimulus	7.42E-03
79	GO:0009306: protein secretion	7.87E-03
80	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	8.32E-03
81	GO:0042631: cellular response to water deprivation	8.79E-03
82	GO:0010305: leaf vascular tissue pattern formation	9.26E-03
83	GO:0009958: positive gravitropism	9.26E-03
84	GO:0010182: sugar mediated signaling pathway	9.26E-03
85	GO:0046323: glucose import	9.26E-03
86	GO:0071472: cellular response to salt stress	9.26E-03
87	GO:0015986: ATP synthesis coupled proton transport	9.74E-03
88	GO:0006810: transport	9.82E-03
89	GO:0016032: viral process	1.12E-02
90	GO:0071281: cellular response to iron ion	1.18E-02
91	GO:0055085: transmembrane transport	1.24E-02
92	GO:0042128: nitrate assimilation	1.51E-02
93	GO:0080167: response to karrikin	1.62E-02
94	GO:0030244: cellulose biosynthetic process	1.68E-02
95	GO:0018298: protein-chromophore linkage	1.68E-02
96	GO:0009737: response to abscisic acid	1.72E-02
97	GO:0009631: cold acclimation	1.86E-02
98	GO:0006865: amino acid transport	1.92E-02
99	GO:0006099: tricarboxylic acid cycle	2.05E-02
100	GO:0009414: response to water deprivation	2.18E-02
101	GO:0042742: defense response to bacterium	2.25E-02
102	GO:0009926: auxin polar transport	2.38E-02
103	GO:0009408: response to heat	2.39E-02
104	GO:0009733: response to auxin	2.60E-02
105	GO:0006855: drug transmembrane transport	2.66E-02
106	GO:0009809: lignin biosynthetic process	2.94E-02
107	GO:0006364: rRNA processing	2.94E-02
108	GO:0006857: oligopeptide transport	3.09E-02
109	GO:0009409: response to cold	3.28E-02
110	GO:0006096: glycolytic process	3.32E-02
111	GO:0009742: brassinosteroid mediated signaling pathway	3.94E-02
112	GO:0042744: hydrogen peroxide catabolic process	4.86E-02

Rank	GO Term	Adjusted P value
1	GO:0102193: protein-ribulosamine 3-kinase activity	0.00E+00
2	GO:0046406: magnesium protoporphyrin IX methyltransferase activity	0.00E+00
3	GO:0010301: xanthoxin dehydrogenase activity	0.00E+00
4	GO:0047538: 2-carboxy-D-arabinitol-1-phosphatase activity	0.00E+00
5	GO:0015250: water channel activity	8.92E-05
6	GO:0004333: fumarate hydratase activity	1.08E-04
7	GO:0050139: nicotinate-N-glucosyltransferase activity	1.08E-04
8	GO:0010242: oxygen evolving activity	1.08E-04
9	GO:0045485: omega-6 fatty acid desaturase activity	1.08E-04
10	GO:0008266: poly(U) RNA binding	2.55E-04
11	GO:0005528: FK506 binding	3.57E-04
12	GO:0016851: magnesium chelatase activity	6.01E-04
13	GO:0003865: 3-oxo-5-alpha-steroid 4-dehydrogenase activity	6.01E-04
14	GO:0016746: transferase activity, transferring acyl groups	6.30E-04
15	GO:0010011: auxin binding	7.98E-04
16	GO:0004739: pyruvate dehydrogenase (acetyl-transferring) activity	7.98E-04
17	GO:0010328: auxin influx transmembrane transporter activity	7.98E-04
18	GO:0043495: protein anchor	7.98E-04
19	GO:0042578: phosphoric ester hydrolase activity	1.23E-03
20	GO:0034485: phosphatidylinositol-3,4,5-trisphosphate 5-phosphatase activity	1.23E-03
21	GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity	1.23E-03
22	GO:0035673: oligopeptide transmembrane transporter activity	1.23E-03
23	GO:0004366: glycerol-3-phosphate O-acyltransferase activity	1.23E-03
24	GO:0016168: chlorophyll binding	1.29E-03
25	GO:0004017: adenylate kinase activity	1.47E-03
26	GO:0019899: enzyme binding	1.73E-03
27	GO:0016627: oxidoreductase activity, acting on the CH-CH group of donors	2.57E-03
28	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	2.97E-03
29	GO:0004568: chitinase activity	3.20E-03
30	GO:0015198: oligopeptide transporter activity	3.87E-03
31	GO:0004439: phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity	3.87E-03
32	GO:0004022: alcohol dehydrogenase (NAD) activity	4.23E-03
33	GO:0102337: 3-oxo-cerotoyl-CoA synthase activity	5.35E-03
34	GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity	5.35E-03
35	GO:0102336: 3-oxo-arachidoyl-CoA synthase activity	5.35E-03
36	GO:0030570: pectate lyase activity	7.42E-03
37	GO:0022891: substrate-specific transmembrane transporter activity	7.42E-03
38	GO:0046933: proton-transporting ATP synthase activity, rotational mechanism	9.26E-03
39	GO:0005355: glucose transmembrane transporter activity	9.74E-03
40	GO:0050662: coenzyme binding	9.74E-03
41	GO:0042626: ATPase activity, coupled to transmembrane movement of substances	1.07E-02
42	GO:0042802: identical protein binding	1.07E-02
43	GO:0016791: phosphatase activity	1.23E-02
44	GO:0005200: structural constituent of cytoskeleton	1.28E-02
45	GO:0008483: transaminase activity	1.28E-02
46	GO:0016597: amino acid binding	1.34E-02
47	GO:0030247: polysaccharide binding	1.56E-02
48	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	1.68E-02
49	GO:0004222: metalloendopeptidase activity	1.80E-02
50	GO:0003746: translation elongation factor activity	1.99E-02
51	GO:0003993: acid phosphatase activity	2.05E-02
52	GO:0003824: catalytic activity	2.52E-02
53	GO:0015293: symporter activity	2.59E-02
54	GO:0016298: lipase activity	3.02E-02
55	GO:0015171: amino acid transmembrane transporter activity	3.17E-02
56	GO:0031625: ubiquitin protein ligase binding	3.17E-02
57	GO:0045735: nutrient reservoir activity	3.32E-02
58	GO:0080043: quercetin 3-O-glucosyltransferase activity	3.55E-02
59	GO:0080044: quercetin 7-O-glucosyltransferase activity	3.55E-02
60	GO:0016874: ligase activity	3.63E-02
61	GO:0019843: rRNA binding	4.44E-02
62	GO:0016829: lyase activity	4.69E-02

Rank	GO Term	Adjusted P value
1	GO:0010240: plastid pyruvate dehydrogenase complex	0.00E+00
2	GO:0009535: chloroplast thylakoid membrane	1.28E-19
3	GO:0009534: chloroplast thylakoid	4.50E-19
4	GO:0009507: chloroplast	1.57E-17
5	GO:0009543: chloroplast thylakoid lumen	5.92E-09
6	GO:0009579: thylakoid	5.08E-08
7	GO:0009941: chloroplast envelope	8.54E-08
8	GO:0009570: chloroplast stroma	3.84E-06
9	GO:0030095: chloroplast photosystem II	6.46E-06
10	GO:0010287: plastoglobule	7.71E-05
11	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	1.00E-04
12	GO:0009515: granal stacked thylakoid	1.08E-04
13	GO:0045239: tricarboxylic acid cycle enzyme complex	1.08E-04
14	GO:0043674: columella	1.08E-04
15	GO:0016021: integral component of membrane	1.25E-04
16	GO:0009508: plastid chromosome	2.25E-04
17	GO:0031977: thylakoid lumen	2.34E-04
18	GO:0030093: chloroplast photosystem I	2.52E-04
19	GO:0009654: photosystem II oxygen evolving complex	3.94E-04
20	GO:0010007: magnesium chelatase complex	4.19E-04
21	GO:0015630: microtubule cytoskeleton	6.01E-04
22	GO:0009523: photosystem II	8.05E-04
23	GO:0019898: extrinsic component of membrane	8.05E-04
24	GO:0009295: nucleoid	1.09E-03
25	GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1)	1.23E-03
26	GO:0005887: integral component of plasma membrane	1.25E-03
27	GO:0016020: membrane	1.61E-03
28	GO:0042807: central vacuole	1.73E-03
29	GO:0009986: cell surface	1.73E-03
30	GO:0009538: photosystem I reaction center	2.00E-03
31	GO:0008180: COP9 signalosome	2.57E-03
32	GO:0009706: chloroplast inner membrane	4.86E-03
33	GO:0042651: thylakoid membrane	6.15E-03
34	GO:0009522: photosystem I	9.74E-03
35	GO:0010319: stromule	1.28E-02
36	GO:0031969: chloroplast membrane	1.62E-02
37	GO:0019005: SCF ubiquitin ligase complex	1.68E-02
38	GO:0043231: intracellular membrane-bounded organelle	2.64E-02
39	GO:0000502: proteasome complex	2.94E-02
40	GO:0005886: plasma membrane	3.54E-02