Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT1G74070

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0006780: uroporphyrinogen III biosynthetic process0.00E+00
2GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation0.00E+00
3GO:0016553: base conversion or substitution editing0.00E+00
4GO:0061635: regulation of protein complex stability0.00E+00
5GO:0015805: S-adenosyl-L-methionine transport0.00E+00
6GO:0006428: isoleucyl-tRNA aminoacylation0.00E+00
7GO:0006642: triglyceride mobilization0.00E+00
8GO:0042407: cristae formation0.00E+00
9GO:0070272: proton-transporting ATP synthase complex biogenesis0.00E+00
10GO:0070455: positive regulation of heme biosynthetic process0.00E+00
11GO:0015882: L-ascorbic acid transport0.00E+00
12GO:0006399: tRNA metabolic process0.00E+00
13GO:0006437: tyrosyl-tRNA aminoacylation0.00E+00
14GO:0070125: mitochondrial translational elongation0.00E+00
15GO:0002184: cytoplasmic translational termination0.00E+00
16GO:0009658: chloroplast organization1.32E-14
17GO:0006412: translation1.18E-11
18GO:0032544: plastid translation3.04E-09
19GO:0009735: response to cytokinin5.32E-08
20GO:0015979: photosynthesis1.46E-07
21GO:0042254: ribosome biogenesis4.07E-07
22GO:0015995: chlorophyll biosynthetic process5.01E-07
23GO:0010027: thylakoid membrane organization7.26E-06
24GO:0006418: tRNA aminoacylation for protein translation1.07E-05
25GO:0006779: porphyrin-containing compound biosynthetic process3.80E-05
26GO:0006782: protoporphyrinogen IX biosynthetic process4.92E-05
27GO:0006457: protein folding9.53E-05
28GO:0010207: photosystem II assembly1.14E-04
29GO:0010020: chloroplast fission1.14E-04
30GO:0043489: RNA stabilization3.84E-04
31GO:1904966: positive regulation of vitamin E biosynthetic process3.84E-04
32GO:1904964: positive regulation of phytol biosynthetic process3.84E-04
33GO:0046166: glyceraldehyde-3-phosphate biosynthetic process3.84E-04
34GO:0042371: vitamin K biosynthetic process3.84E-04
35GO:0010028: xanthophyll cycle3.84E-04
36GO:0006430: lysyl-tRNA aminoacylation3.84E-04
37GO:0071588: hydrogen peroxide mediated signaling pathway3.84E-04
38GO:0000413: protein peptidyl-prolyl isomerization4.27E-04
39GO:0042255: ribosome assembly4.35E-04
40GO:0006353: DNA-templated transcription, termination4.35E-04
41GO:0009793: embryo development ending in seed dormancy4.39E-04
42GO:0071482: cellular response to light stimulus5.32E-04
43GO:0006783: heme biosynthetic process6.38E-04
44GO:0006695: cholesterol biosynthetic process8.33E-04
45GO:1902326: positive regulation of chlorophyll biosynthetic process8.33E-04
46GO:0034755: iron ion transmembrane transport8.33E-04
47GO:0006423: cysteinyl-tRNA aminoacylation8.33E-04
48GO:0006568: tryptophan metabolic process8.33E-04
49GO:0010270: photosystem II oxygen evolving complex assembly8.33E-04
50GO:0043039: tRNA aminoacylation8.33E-04
51GO:0009073: aromatic amino acid family biosynthetic process1.01E-03
52GO:0043085: positive regulation of catalytic activity1.01E-03
53GO:0006352: DNA-templated transcription, initiation1.01E-03
54GO:0018119: peptidyl-cysteine S-nitrosylation1.01E-03
55GO:0090391: granum assembly1.35E-03
56GO:0019563: glycerol catabolic process1.35E-03
57GO:0006518: peptide metabolic process1.35E-03
58GO:0010581: regulation of starch biosynthetic process1.35E-03
59GO:0006433: prolyl-tRNA aminoacylation1.35E-03
60GO:0006617: SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition1.35E-03
61GO:0071492: cellular response to UV-A1.35E-03
62GO:0032504: multicellular organism reproduction1.35E-03
63GO:0048481: plant ovule development1.37E-03
64GO:0019253: reductive pentose-phosphate cycle1.47E-03
65GO:0006241: CTP biosynthetic process1.95E-03
66GO:0009052: pentose-phosphate shunt, non-oxidative branch1.95E-03
67GO:0033014: tetrapyrrole biosynthetic process1.95E-03
68GO:0019048: modulation by virus of host morphology or physiology1.95E-03
69GO:0006424: glutamyl-tRNA aminoacylation1.95E-03
70GO:0006165: nucleoside diphosphate phosphorylation1.95E-03
71GO:0006228: UTP biosynthetic process1.95E-03
72GO:0031048: chromatin silencing by small RNA1.95E-03
73GO:0010088: phloem development1.95E-03
74GO:0016556: mRNA modification1.95E-03
75GO:0043572: plastid fission1.95E-03
76GO:0006986: response to unfolded protein1.95E-03
77GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis1.95E-03
78GO:2001141: regulation of RNA biosynthetic process1.95E-03
79GO:0051085: chaperone mediated protein folding requiring cofactor1.95E-03
80GO:0006633: fatty acid biosynthetic process2.20E-03
81GO:0045454: cell redox homeostasis2.29E-03
82GO:0051567: histone H3-K9 methylation2.62E-03
83GO:0071483: cellular response to blue light2.62E-03
84GO:0010109: regulation of photosynthesis2.62E-03
85GO:0071486: cellular response to high light intensity2.62E-03
86GO:0006183: GTP biosynthetic process2.62E-03
87GO:0006508: proteolysis2.66E-03
88GO:0009831: plant-type cell wall modification involved in multidimensional cell growth2.95E-03
89GO:0032543: mitochondrial translation3.35E-03
90GO:0006564: L-serine biosynthetic process3.35E-03
91GO:0045038: protein import into chloroplast thylakoid membrane3.35E-03
92GO:0031365: N-terminal protein amino acid modification3.35E-03
93GO:0042335: cuticle development3.75E-03
94GO:0016554: cytidine to uridine editing4.14E-03
95GO:0010190: cytochrome b6f complex assembly4.14E-03
96GO:0006828: manganese ion transport4.14E-03
97GO:0016458: gene silencing4.14E-03
98GO:0006014: D-ribose metabolic process4.14E-03
99GO:0042549: photosystem II stabilization4.14E-03
100GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway4.14E-03
101GO:0000470: maturation of LSU-rRNA4.14E-03
102GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)4.99E-03
103GO:0009854: oxidative photosynthetic carbon pathway4.99E-03
104GO:0010019: chloroplast-nucleus signaling pathway4.99E-03
105GO:0010555: response to mannitol4.99E-03
106GO:0032502: developmental process5.34E-03
107GO:0006614: SRP-dependent cotranslational protein targeting to membrane5.89E-03
108GO:0010196: nonphotochemical quenching5.89E-03
109GO:0006400: tRNA modification5.89E-03
110GO:0009828: plant-type cell wall loosening6.06E-03
111GO:0009642: response to light intensity6.85E-03
112GO:0048564: photosystem I assembly6.85E-03
113GO:0019430: removal of superoxide radicals7.86E-03
114GO:0009657: plastid organization7.86E-03
115GO:0045337: farnesyl diphosphate biosynthetic process8.92E-03
116GO:0033384: geranyl diphosphate biosynthetic process8.92E-03
117GO:0098656: anion transmembrane transport8.92E-03
118GO:0009817: defense response to fungus, incompatible interaction9.46E-03
119GO:0018298: protein-chromophore linkage9.46E-03
120GO:0009790: embryo development9.55E-03
121GO:1900865: chloroplast RNA modification1.00E-02
122GO:0010380: regulation of chlorophyll biosynthetic process1.00E-02
123GO:0043067: regulation of programmed cell death1.00E-02
124GO:0009631: cold acclimation1.10E-02
125GO:0030422: production of siRNA involved in RNA interference1.12E-02
126GO:0045036: protein targeting to chloroplast1.12E-02
127GO:0006949: syncytium formation1.12E-02
128GO:0009637: response to blue light1.20E-02
129GO:0006816: calcium ion transport1.24E-02
130GO:0009773: photosynthetic electron transport in photosystem I1.24E-02
131GO:0006879: cellular iron ion homeostasis1.24E-02
132GO:0006415: translational termination1.24E-02
133GO:0034599: cellular response to oxidative stress1.26E-02
134GO:0006839: mitochondrial transport1.37E-02
135GO:0006631: fatty acid metabolic process1.43E-02
136GO:0008152: metabolic process1.44E-02
137GO:2000012: regulation of auxin polar transport1.49E-02
138GO:0006094: gluconeogenesis1.49E-02
139GO:0009767: photosynthetic electron transport chain1.49E-02
140GO:0010114: response to red light1.55E-02
141GO:0090351: seedling development1.77E-02
142GO:0009664: plant-type cell wall organization1.95E-02
143GO:0000027: ribosomal large subunit assembly2.05E-02
144GO:0019344: cysteine biosynthetic process2.05E-02
145GO:0051603: proteolysis involved in cellular protein catabolic process2.17E-02
146GO:0009695: jasmonic acid biosynthetic process2.20E-02
147GO:0009768: photosynthesis, light harvesting in photosystem I2.20E-02
148GO:0008299: isoprenoid biosynthetic process2.20E-02
149GO:0031408: oxylipin biosynthetic process2.36E-02
150GO:0006306: DNA methylation2.36E-02
151GO:0006096: glycolytic process2.48E-02
152GO:0009411: response to UV2.67E-02
153GO:0019722: calcium-mediated signaling2.84E-02
154GO:0016117: carotenoid biosynthetic process3.01E-02
155GO:0042742: defense response to bacterium3.02E-02
156GO:0080022: primary root development3.18E-02
157GO:0008033: tRNA processing3.18E-02
158GO:0006662: glycerol ether metabolic process3.35E-02
159GO:0010197: polar nucleus fusion3.35E-02
160GO:0006342: chromatin silencing3.35E-02
161GO:0007018: microtubule-based movement3.53E-02
162GO:0009791: post-embryonic development3.71E-02
163GO:0019252: starch biosynthetic process3.71E-02
164GO:0000302: response to reactive oxygen species3.89E-02
165GO:0016032: viral process4.08E-02
166GO:0055085: transmembrane transport4.13E-02
167GO:0042744: hydrogen peroxide catabolic process4.25E-02
168GO:0007267: cell-cell signaling4.66E-02
169GO:0051607: defense response to virus4.85E-02
170GO:0009409: response to cold4.95E-02
RankGO TermAdjusted P value
1GO:0008887: glycerate kinase activity0.00E+00
2GO:0050518: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity0.00E+00
3GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity0.00E+00
4GO:0015229: L-ascorbic acid transporter activity0.00E+00
5GO:0004822: isoleucine-tRNA ligase activity0.00E+00
6GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity0.00E+00
7GO:0004852: uroporphyrinogen-III synthase activity0.00E+00
8GO:0005048: signal sequence binding0.00E+00
9GO:0009974: zeinoxanthin epsilon hydroxylase activity0.00E+00
10GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity0.00E+00
11GO:0047450: crotonoyl-[acyl-carrier-protein] hydratase activity0.00E+00
12GO:0019843: rRNA binding1.52E-23
13GO:0003735: structural constituent of ribosome4.04E-14
14GO:0003755: peptidyl-prolyl cis-trans isomerase activity1.22E-08
15GO:0051920: peroxiredoxin activity6.09E-06
16GO:0019171: 3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity6.59E-06
17GO:0005528: FK506 binding8.60E-06
18GO:0016209: antioxidant activity1.46E-05
19GO:0004812: aminoacyl-tRNA ligase activity2.71E-05
20GO:0016987: sigma factor activity8.90E-05
21GO:0043495: protein anchor8.90E-05
22GO:0001053: plastid sigma factor activity8.90E-05
23GO:0051087: chaperone binding2.12E-04
24GO:0004831: tyrosine-tRNA ligase activity3.84E-04
25GO:0004655: porphobilinogen synthase activity3.84E-04
26GO:0004321: fatty-acyl-CoA synthase activity3.84E-04
27GO:0042286: glutamate-1-semialdehyde 2,1-aminomutase activity3.84E-04
28GO:0047381: dodecanoyl-[acyl-carrier-protein] hydrolase activity3.84E-04
29GO:0004425: indole-3-glycerol-phosphate synthase activity3.84E-04
30GO:0004824: lysine-tRNA ligase activity3.84E-04
31GO:0004807: triose-phosphate isomerase activity3.84E-04
32GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity3.84E-04
33GO:0003723: RNA binding6.11E-04
34GO:0016630: protochlorophyllide reductase activity8.33E-04
35GO:0000774: adenyl-nucleotide exchange factor activity8.33E-04
36GO:0004618: phosphoglycerate kinase activity8.33E-04
37GO:0004617: phosphoglycerate dehydrogenase activity8.33E-04
38GO:0004817: cysteine-tRNA ligase activity8.33E-04
39GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity8.33E-04
40GO:0008047: enzyme activator activity8.76E-04
41GO:0016168: chlorophyll binding1.05E-03
42GO:0003729: mRNA binding1.05E-03
43GO:0051082: unfolded protein binding1.10E-03
44GO:0070330: aromatase activity1.35E-03
45GO:0002161: aminoacyl-tRNA editing activity1.35E-03
46GO:0004148: dihydrolipoyl dehydrogenase activity1.35E-03
47GO:0004751: ribose-5-phosphate isomerase activity1.35E-03
48GO:0030267: glyoxylate reductase (NADP) activity1.35E-03
49GO:0016296: palmitoyl-[acyl-carrier-protein] hydrolase activity1.35E-03
50GO:0016295: myristoyl-[acyl-carrier-protein] hydrolase activity1.35E-03
51GO:0004827: proline-tRNA ligase activity1.35E-03
52GO:0008266: poly(U) RNA binding1.47E-03
53GO:0004222: metalloendopeptidase activity1.55E-03
54GO:0016149: translation release factor activity, codon specific1.95E-03
55GO:0035197: siRNA binding1.95E-03
56GO:0004550: nucleoside diphosphate kinase activity1.95E-03
57GO:0043023: ribosomal large subunit binding1.95E-03
58GO:0008097: 5S rRNA binding1.95E-03
59GO:0016836: hydro-lyase activity2.62E-03
60GO:0008574: ATP-dependent microtubule motor activity, plus-end-directed2.62E-03
61GO:0022891: substrate-specific transmembrane transporter activity2.95E-03
62GO:0003727: single-stranded RNA binding3.20E-03
63GO:0003959: NADPH dehydrogenase activity3.35E-03
64GO:0016773: phosphotransferase activity, alcohol group as acceptor3.35E-03
65GO:0018685: alkane 1-monooxygenase activity3.35E-03
66GO:0004130: cytochrome-c peroxidase activity4.14E-03
67GO:0016688: L-ascorbate peroxidase activity4.14E-03
68GO:0004791: thioredoxin-disulfide reductase activity4.35E-03
69GO:0004601: peroxidase activity4.95E-03
70GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity4.99E-03
71GO:0102391: decanoate--CoA ligase activity4.99E-03
72GO:0004747: ribokinase activity4.99E-03
73GO:0004723: calcium-dependent protein serine/threonine phosphatase activity4.99E-03
74GO:0080043: quercetin 3-O-glucosyltransferase activity5.24E-03
75GO:0080044: quercetin 7-O-glucosyltransferase activity5.24E-03
76GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor5.69E-03
77GO:0019899: enzyme binding5.89E-03
78GO:0004467: long-chain fatty acid-CoA ligase activity5.89E-03
79GO:0016831: carboxy-lyase activity5.89E-03
80GO:0008235: metalloexopeptidase activity5.89E-03
81GO:0102425: myricetin 3-O-glucosyltransferase activity5.89E-03
82GO:0102360: daphnetin 3-O-glucosyltransferase activity5.89E-03
83GO:0008237: metallopeptidase activity6.44E-03
84GO:0047893: flavonol 3-O-glucosyltransferase activity6.85E-03
85GO:0052747: sinapyl alcohol dehydrogenase activity6.85E-03
86GO:0004033: aldo-keto reductase (NADP) activity6.85E-03
87GO:0008865: fructokinase activity6.85E-03
88GO:0008312: 7S RNA binding6.85E-03
89GO:0004337: geranyltranstransferase activity8.92E-03
90GO:0003747: translation release factor activity8.92E-03
91GO:0016207: 4-coumarate-CoA ligase activity8.92E-03
92GO:0042803: protein homodimerization activity9.70E-03
93GO:0005381: iron ion transmembrane transporter activity1.00E-02
94GO:0005384: manganese ion transmembrane transporter activity1.00E-02
95GO:0047617: acyl-CoA hydrolase activity1.00E-02
96GO:0003746: translation elongation factor activity1.20E-02
97GO:0004177: aminopeptidase activity1.24E-02
98GO:0004161: dimethylallyltranstransferase activity1.24E-02
99GO:0008194: UDP-glycosyltransferase activity1.36E-02
100GO:0000049: tRNA binding1.37E-02
101GO:0045551: cinnamyl-alcohol dehydrogenase activity1.37E-02
102GO:0004521: endoribonuclease activity1.37E-02
103GO:0009055: electron carrier activity1.38E-02
104GO:0004565: beta-galactosidase activity1.49E-02
105GO:0008081: phosphoric diester hydrolase activity1.49E-02
106GO:0005315: inorganic phosphate transmembrane transporter activity1.49E-02
107GO:0015095: magnesium ion transmembrane transporter activity1.49E-02
108GO:0031072: heat shock protein binding1.49E-02
109GO:0004185: serine-type carboxypeptidase activity1.55E-02
110GO:0051537: 2 iron, 2 sulfur cluster binding1.68E-02
111GO:0016491: oxidoreductase activity1.81E-02
112GO:0031409: pigment binding1.91E-02
113GO:0003899: DNA-directed 5'-3' RNA polymerase activity2.10E-02
114GO:0003690: double-stranded DNA binding2.17E-02
115GO:0004176: ATP-dependent peptidase activity2.36E-02
116GO:0005509: calcium ion binding2.64E-02
117GO:0008514: organic anion transmembrane transporter activity2.84E-02
118GO:0047134: protein-disulfide reductase activity3.01E-02
119GO:0008080: N-acetyltransferase activity3.35E-02
120GO:0050662: coenzyme binding3.53E-02
121GO:0010181: FMN binding3.53E-02
122GO:0046872: metal ion binding3.76E-02
123GO:0003924: GTPase activity4.37E-02
124GO:0008483: transaminase activity4.66E-02
125GO:0004519: endonuclease activity4.83E-02
126GO:0016597: amino acid binding4.85E-02
127GO:0005507: copper ion binding4.86E-02
RankGO TermAdjusted P value
1GO:0009571: proplastid stroma0.00E+00
2GO:0009507: chloroplast2.82E-88
3GO:0009570: chloroplast stroma4.51E-69
4GO:0009941: chloroplast envelope1.76E-51
5GO:0009579: thylakoid4.38E-29
6GO:0009535: chloroplast thylakoid membrane1.77E-25
7GO:0009543: chloroplast thylakoid lumen4.05E-17
8GO:0031977: thylakoid lumen5.51E-17
9GO:0005840: ribosome8.77E-15
10GO:0009534: chloroplast thylakoid2.07E-11
11GO:0009654: photosystem II oxygen evolving complex2.89E-07
12GO:0009536: plastid9.33E-06
13GO:0019898: extrinsic component of membrane4.91E-05
14GO:0000311: plastid large ribosomal subunit7.75E-05
15GO:0000312: plastid small ribosomal subunit1.14E-04
16GO:0009706: chloroplast inner membrane1.87E-04
17GO:0042651: thylakoid membrane2.12E-04
18GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex3.84E-04
19GO:0017101: aminoacyl-tRNA synthetase multienzyme complex3.84E-04
20GO:0009515: granal stacked thylakoid3.84E-04
21GO:0009547: plastid ribosome3.84E-04
22GO:0031969: chloroplast membrane3.89E-04
23GO:0080085: signal recognition particle, chloroplast targeting8.33E-04
24GO:0009295: nucleoid8.52E-04
25GO:0030095: chloroplast photosystem II1.47E-03
26GO:0005719: nuclear euchromatin1.95E-03
27GO:0005759: mitochondrial matrix2.20E-03
28GO:0009532: plastid stroma2.47E-03
29GO:0016020: membrane3.32E-03
30GO:0046658: anchored component of plasma membrane3.90E-03
31GO:0043231: intracellular membrane-bounded organelle3.93E-03
32GO:0009523: photosystem II4.67E-03
33GO:0009533: chloroplast stromal thylakoid5.89E-03
34GO:0010319: stromule6.44E-03
35GO:0030529: intracellular ribonucleoprotein complex7.24E-03
36GO:0022625: cytosolic large ribosomal subunit7.42E-03
37GO:0009539: photosystem II reaction center7.86E-03
38GO:0005786: signal recognition particle, endoplasmic reticulum targeting7.86E-03
39GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)8.92E-03
40GO:0015030: Cajal body1.00E-02
41GO:0090404: pollen tube tip1.24E-02
42GO:0009508: plastid chromosome1.49E-02
43GO:0009505: plant-type cell wall1.64E-02
44GO:0022627: cytosolic small ribosomal subunit1.69E-02
45GO:0030076: light-harvesting complex1.77E-02
46GO:0043234: protein complex1.91E-02
47GO:0005875: microtubule associated complex1.91E-02
48GO:0015935: small ribosomal subunit2.36E-02
49GO:0005874: microtubule2.58E-02
50GO:0022626: cytosolic ribosome2.74E-02
51GO:0005871: kinesin complex3.01E-02
52GO:0009522: photosystem I3.53E-02
53GO:0010287: plastoglobule3.54E-02
54GO:0005743: mitochondrial inner membrane3.99E-02
55GO:0005739: mitochondrion4.10E-02
Gene type



Gene DE type





AT4G28660