Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT1G73530

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0033494: ferulate metabolic process0.00E+00
2GO:0061635: regulation of protein complex stability0.00E+00
3GO:0006642: triglyceride mobilization0.00E+00
4GO:0042821: pyridoxal biosynthetic process0.00E+00
5GO:0016553: base conversion or substitution editing0.00E+00
6GO:0015805: S-adenosyl-L-methionine transport0.00E+00
7GO:0042820: vitamin B6 catabolic process0.00E+00
8GO:0006399: tRNA metabolic process0.00E+00
9GO:0015979: photosynthesis6.46E-13
10GO:0009658: chloroplast organization3.06E-07
11GO:0010196: nonphotochemical quenching2.93E-06
12GO:0090391: granum assembly9.64E-06
13GO:0009773: photosynthetic electron transport in photosystem I2.08E-05
14GO:0010027: thylakoid membrane organization3.04E-05
15GO:0018298: protein-chromophore linkage5.14E-05
16GO:0031365: N-terminal protein amino acid modification6.36E-05
17GO:0009735: response to cytokinin1.14E-04
18GO:0006400: tRNA modification1.69E-04
19GO:0006412: translation2.02E-04
20GO:0006427: histidyl-tRNA aminoacylation2.39E-04
21GO:0009443: pyridoxal 5'-phosphate salvage2.39E-04
22GO:0043489: RNA stabilization2.39E-04
23GO:0046166: glyceraldehyde-3-phosphate biosynthetic process2.39E-04
24GO:1904966: positive regulation of vitamin E biosynthetic process2.39E-04
25GO:1904964: positive regulation of phytol biosynthetic process2.39E-04
26GO:0042371: vitamin K biosynthetic process2.39E-04
27GO:0043686: co-translational protein modification2.39E-04
28GO:0071588: hydrogen peroxide mediated signaling pathway2.39E-04
29GO:0071482: cellular response to light stimulus2.67E-04
30GO:0009657: plastid organization2.67E-04
31GO:0042254: ribosome biogenesis3.40E-04
32GO:0043085: positive regulation of catalytic activity5.19E-04
33GO:0006352: DNA-templated transcription, initiation5.19E-04
34GO:1902326: positive regulation of chlorophyll biosynthetic process5.29E-04
35GO:0010115: regulation of abscisic acid biosynthetic process5.29E-04
36GO:0034755: iron ion transmembrane transport5.29E-04
37GO:0006568: tryptophan metabolic process5.29E-04
38GO:0010024: phytochromobilin biosynthetic process5.29E-04
39GO:0016024: CDP-diacylglycerol biosynthetic process5.92E-04
40GO:0006006: glucose metabolic process6.71E-04
41GO:0010143: cutin biosynthetic process7.56E-04
42GO:0019253: reductive pentose-phosphate cycle7.56E-04
43GO:0010581: regulation of starch biosynthetic process8.60E-04
44GO:0006788: heme oxidation8.60E-04
45GO:0006954: inflammatory response8.60E-04
46GO:0019563: glycerol catabolic process8.60E-04
47GO:0006518: peptide metabolic process8.60E-04
48GO:0006433: prolyl-tRNA aminoacylation8.60E-04
49GO:0071492: cellular response to UV-A8.60E-04
50GO:0032504: multicellular organism reproduction8.60E-04
51GO:0009768: photosynthesis, light harvesting in photosystem I1.14E-03
52GO:0009644: response to high light intensity1.17E-03
53GO:0009800: cinnamic acid biosynthetic process1.23E-03
54GO:0010088: phloem development1.23E-03
55GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis1.23E-03
56GO:2001141: regulation of RNA biosynthetic process1.23E-03
57GO:0009152: purine ribonucleotide biosynthetic process1.23E-03
58GO:0046653: tetrahydrofolate metabolic process1.23E-03
59GO:0031408: oxylipin biosynthetic process1.25E-03
60GO:0015994: chlorophyll metabolic process1.64E-03
61GO:0071483: cellular response to blue light1.64E-03
62GO:0010109: regulation of photosynthesis1.64E-03
63GO:0071486: cellular response to high light intensity1.64E-03
64GO:0080110: sporopollenin biosynthetic process2.09E-03
65GO:0006564: L-serine biosynthetic process2.09E-03
66GO:0006461: protein complex assembly2.09E-03
67GO:0006655: phosphatidylglycerol biosynthetic process2.57E-03
68GO:0006559: L-phenylalanine catabolic process2.57E-03
69GO:0010190: cytochrome b6f complex assembly2.57E-03
70GO:0006596: polyamine biosynthetic process2.57E-03
71GO:0006561: proline biosynthetic process2.57E-03
72GO:0048759: xylem vessel member cell differentiation2.57E-03
73GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway2.57E-03
74GO:0000470: maturation of LSU-rRNA2.57E-03
75GO:0042372: phylloquinone biosynthetic process3.09E-03
76GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)3.09E-03
77GO:0048280: vesicle fusion with Golgi apparatus3.09E-03
78GO:0009854: oxidative photosynthetic carbon pathway3.09E-03
79GO:0010019: chloroplast-nucleus signaling pathway3.09E-03
80GO:0045454: cell redox homeostasis3.11E-03
81GO:0009645: response to low light intensity stimulus3.64E-03
82GO:0009395: phospholipid catabolic process3.64E-03
83GO:0042744: hydrogen peroxide catabolic process3.80E-03
84GO:0006605: protein targeting4.23E-03
85GO:0048564: photosystem I assembly4.23E-03
86GO:0015995: chlorophyll biosynthetic process4.25E-03
87GO:0019430: removal of superoxide radicals4.84E-03
88GO:0032544: plastid translation4.84E-03
89GO:0008152: metabolic process4.97E-03
90GO:0009631: cold acclimation5.43E-03
91GO:0009051: pentose-phosphate shunt, oxidative branch5.48E-03
92GO:0000373: Group II intron splicing5.48E-03
93GO:0009637: response to blue light5.96E-03
94GO:0009853: photorespiration5.96E-03
95GO:0055114: oxidation-reduction process6.07E-03
96GO:0010380: regulation of chlorophyll biosynthetic process6.15E-03
97GO:0010205: photoinhibition6.15E-03
98GO:0034599: cellular response to oxidative stress6.23E-03
99GO:0006896: Golgi to vacuole transport6.85E-03
100GO:0009688: abscisic acid biosynthetic process6.85E-03
101GO:0048829: root cap development6.85E-03
102GO:0009073: aromatic amino acid family biosynthetic process7.58E-03
103GO:0006879: cellular iron ion homeostasis7.58E-03
104GO:0009750: response to fructose7.58E-03
105GO:0010114: response to red light7.68E-03
106GO:0010628: positive regulation of gene expression9.11E-03
107GO:0006094: gluconeogenesis9.11E-03
108GO:0010020: chloroplast fission9.92E-03
109GO:0010207: photosystem II assembly9.92E-03
110GO:0051603: proteolysis involved in cellular protein catabolic process1.07E-02
111GO:0090351: seedling development1.07E-02
112GO:0006636: unsaturated fatty acid biosynthetic process1.16E-02
113GO:0006096: glycolytic process1.23E-02
114GO:0000027: ribosomal large subunit assembly1.25E-02
115GO:0006418: tRNA aminoacylation for protein translation1.34E-02
116GO:0007017: microtubule-based process1.34E-02
117GO:0009695: jasmonic acid biosynthetic process1.34E-02
118GO:0003333: amino acid transmembrane transport1.43E-02
119GO:0016226: iron-sulfur cluster assembly1.53E-02
120GO:0030245: cellulose catabolic process1.53E-02
121GO:0009831: plant-type cell wall modification involved in multidimensional cell growth1.62E-02
122GO:0010584: pollen exine formation1.72E-02
123GO:0009306: protein secretion1.72E-02
124GO:0042147: retrograde transport, endosome to Golgi1.82E-02
125GO:0006397: mRNA processing1.92E-02
126GO:0042335: cuticle development1.93E-02
127GO:0080022: primary root development1.93E-02
128GO:0010087: phloem or xylem histogenesis1.93E-02
129GO:0006662: glycerol ether metabolic process2.03E-02
130GO:0010182: sugar mediated signaling pathway2.03E-02
131GO:0048544: recognition of pollen2.14E-02
132GO:0007018: microtubule-based movement2.14E-02
133GO:0006623: protein targeting to vacuole2.25E-02
134GO:0000302: response to reactive oxygen species2.36E-02
135GO:0006891: intra-Golgi vesicle-mediated transport2.36E-02
136GO:0009451: RNA modification2.62E-02
137GO:0009828: plant-type cell wall loosening2.71E-02
138GO:0006888: ER to Golgi vesicle-mediated transport3.45E-02
139GO:0016311: dephosphorylation3.58E-02
140GO:0048481: plant ovule development3.71E-02
141GO:0009826: unidimensional cell growth3.81E-02
142GO:0000160: phosphorelay signal transduction system3.84E-02
143GO:0009407: toxin catabolic process3.97E-02
144GO:0010218: response to far red light3.97E-02
145GO:0006865: amino acid transport4.25E-02
146GO:0045087: innate immune response4.39E-02
147GO:0009409: response to cold4.55E-02
148GO:0006839: mitochondrial transport4.81E-02
149GO:0030001: metal ion transport4.81E-02
150GO:0055085: transmembrane transport4.99E-02
RankGO TermAdjusted P value
1GO:0050236: pyridoxine:NADP 4-dehydrogenase activity0.00E+00
2GO:0010301: xanthoxin dehydrogenase activity0.00E+00
3GO:0050518: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity0.00E+00
4GO:0010487: thermospermine synthase activity0.00E+00
5GO:0008887: glycerate kinase activity0.00E+00
6GO:0009979: 16:0 monogalactosyldiacylglycerol desaturase activity0.00E+00
7GO:0008756: o-succinylbenzoate-CoA ligase activity0.00E+00
8GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity0.00E+00
9GO:0019843: rRNA binding5.75E-10
10GO:0016168: chlorophyll binding1.41E-06
11GO:0005528: FK506 binding1.92E-06
12GO:0003755: peptidyl-prolyl cis-trans isomerase activity1.30E-05
13GO:0016987: sigma factor activity3.99E-05
14GO:0001053: plastid sigma factor activity3.99E-05
15GO:0022891: substrate-specific transmembrane transporter activity1.18E-04
16GO:0004033: aldo-keto reductase (NADP) activity2.16E-04
17GO:0004807: triose-phosphate isomerase activity2.39E-04
18GO:0004821: histidine-tRNA ligase activity2.39E-04
19GO:0042586: peptide deformylase activity2.39E-04
20GO:0004321: fatty-acyl-CoA synthase activity2.39E-04
21GO:0016768: spermine synthase activity2.39E-04
22GO:0047381: dodecanoyl-[acyl-carrier-protein] hydrolase activity2.39E-04
23GO:0030794: (S)-coclaurine-N-methyltransferase activity2.39E-04
24GO:0004425: indole-3-glycerol-phosphate synthase activity2.39E-04
25GO:0016788: hydrolase activity, acting on ester bonds3.40E-04
26GO:0003735: structural constituent of ribosome3.46E-04
27GO:0008047: enzyme activator activity4.48E-04
28GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity5.29E-04
29GO:0016630: protochlorophyllide reductase activity5.29E-04
30GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity5.29E-04
31GO:0047746: chlorophyllase activity5.29E-04
32GO:0004617: phosphoglycerate dehydrogenase activity5.29E-04
33GO:0008266: poly(U) RNA binding7.56E-04
34GO:0004827: proline-tRNA ligase activity8.60E-04
35GO:0050734: hydroxycinnamoyltransferase activity8.60E-04
36GO:0045548: phenylalanine ammonia-lyase activity8.60E-04
37GO:0016742: hydroxymethyl-, formyl- and related transferase activity8.60E-04
38GO:0070402: NADPH binding8.60E-04
39GO:0008864: formyltetrahydrofolate deformylase activity8.60E-04
40GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor8.60E-04
41GO:0016296: palmitoyl-[acyl-carrier-protein] hydrolase activity8.60E-04
42GO:0016295: myristoyl-[acyl-carrier-protein] hydrolase activity8.60E-04
43GO:0031409: pigment binding9.38E-04
44GO:0009055: electron carrier activity1.09E-03
45GO:0016851: magnesium chelatase activity1.23E-03
46GO:0001872: (1->3)-beta-D-glucan binding1.23E-03
47GO:0004045: aminoacyl-tRNA hydrolase activity1.64E-03
48GO:0010328: auxin influx transmembrane transporter activity1.64E-03
49GO:0043495: protein anchor1.64E-03
50GO:0004392: heme oxygenase (decyclizing) activity1.64E-03
51GO:0003841: 1-acylglycerol-3-phosphate O-acyltransferase activity1.64E-03
52GO:0004345: glucose-6-phosphate dehydrogenase activity1.64E-03
53GO:0008574: ATP-dependent microtubule motor activity, plus-end-directed1.64E-03
54GO:0003959: NADPH dehydrogenase activity2.09E-03
55GO:0016773: phosphotransferase activity, alcohol group as acceptor2.09E-03
56GO:0004791: thioredoxin-disulfide reductase activity2.18E-03
57GO:0004130: cytochrome-c peroxidase activity2.57E-03
58GO:0004366: glycerol-3-phosphate O-acyltransferase activity2.57E-03
59GO:0016208: AMP binding2.57E-03
60GO:0016688: L-ascorbate peroxidase activity2.57E-03
61GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity2.57E-03
62GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor2.85E-03
63GO:0004723: calcium-dependent protein serine/threonine phosphatase activity3.09E-03
64GO:0051920: peroxiredoxin activity3.09E-03
65GO:0016597: amino acid binding3.41E-03
66GO:0019899: enzyme binding3.64E-03
67GO:0008235: metalloexopeptidase activity3.64E-03
68GO:0016209: antioxidant activity4.23E-03
69GO:0016491: oxidoreductase activity4.61E-03
70GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water4.84E-03
71GO:0016207: 4-coumarate-CoA ligase activity5.48E-03
72GO:0005381: iron ion transmembrane transporter activity6.15E-03
73GO:0047617: acyl-CoA hydrolase activity6.15E-03
74GO:0003993: acid phosphatase activity6.23E-03
75GO:0050661: NADP binding6.79E-03
76GO:0004177: aminopeptidase activity7.58E-03
77GO:0004185: serine-type carboxypeptidase activity7.68E-03
78GO:0004565: beta-galactosidase activity9.11E-03
79GO:0004022: alcohol dehydrogenase (NAD) activity9.11E-03
80GO:0031072: heat shock protein binding9.11E-03
81GO:0051287: NAD binding9.31E-03
82GO:0003899: DNA-directed 5'-3' RNA polymerase activity1.04E-02
83GO:0046872: metal ion binding1.11E-02
84GO:0003723: RNA binding1.17E-02
85GO:0051536: iron-sulfur cluster binding1.25E-02
86GO:0043424: protein histidine kinase binding1.34E-02
87GO:0051087: chaperone binding1.34E-02
88GO:0042803: protein homodimerization activity1.48E-02
89GO:0016746: transferase activity, transferring acyl groups1.52E-02
90GO:0008810: cellulase activity1.62E-02
91GO:0047134: protein-disulfide reductase activity1.82E-02
92GO:0004812: aminoacyl-tRNA ligase activity1.82E-02
93GO:0008080: N-acetyltransferase activity2.03E-02
94GO:0050662: coenzyme binding2.14E-02
95GO:0000156: phosphorelay response regulator activity2.59E-02
96GO:0005509: calcium ion binding2.61E-02
97GO:0016791: phosphatase activity2.71E-02
98GO:0005200: structural constituent of cytoskeleton2.83E-02
99GO:0042802: identical protein binding3.26E-02
100GO:0016787: hydrolase activity3.33E-02
101GO:0030247: polysaccharide binding3.45E-02
102GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity3.71E-02
103GO:0008168: methyltransferase activity3.81E-02
104GO:0004601: peroxidase activity3.96E-02
105GO:0004222: metalloendopeptidase activity3.97E-02
106GO:0016614: oxidoreductase activity, acting on CH-OH group of donors4.11E-02
107GO:0000149: SNARE binding4.67E-02
108GO:0051539: 4 iron, 4 sulfur cluster binding4.81E-02
RankGO TermAdjusted P value
1GO:0009515: granal stacked thylakoid0.00E+00
2GO:0009507: chloroplast3.05E-51
3GO:0009570: chloroplast stroma2.77E-30
4GO:0009535: chloroplast thylakoid membrane1.34E-26
5GO:0009941: chloroplast envelope8.71E-20
6GO:0009579: thylakoid2.74E-16
7GO:0009543: chloroplast thylakoid lumen1.74E-14
8GO:0031977: thylakoid lumen6.19E-12
9GO:0009534: chloroplast thylakoid2.68E-11
10GO:0005840: ribosome9.91E-07
11GO:0009523: photosystem II1.23E-05
12GO:0009654: photosystem II oxygen evolving complex7.83E-05
13GO:0042651: thylakoid membrane7.83E-05
14GO:0031969: chloroplast membrane7.92E-05
15GO:0019898: extrinsic component of membrane2.29E-04
16GO:0009782: photosystem I antenna complex2.39E-04
17GO:0017101: aminoacyl-tRNA synthetase multienzyme complex2.39E-04
18GO:0009547: plastid ribosome2.39E-04
19GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)3.23E-04
20GO:0016020: membrane3.78E-04
21GO:0030529: intracellular ribonucleoprotein complex4.11E-04
22GO:0030095: chloroplast photosystem II7.56E-04
23GO:0030076: light-harvesting complex8.45E-04
24GO:0010007: magnesium chelatase complex8.60E-04
25GO:0015630: microtubule cytoskeleton1.23E-03
26GO:0005874: microtubule2.25E-03
27GO:0009533: chloroplast stromal thylakoid3.64E-03
28GO:0012507: ER to Golgi transport vesicle membrane4.23E-03
29GO:0046658: anchored component of plasma membrane6.93E-03
30GO:0000311: plastid large ribosomal subunit8.33E-03
31GO:0000312: plastid small ribosomal subunit9.92E-03
32GO:0005777: peroxisome1.26E-02
33GO:0048046: apoplast1.26E-02
34GO:0015935: small ribosomal subunit1.43E-02
35GO:0009532: plastid stroma1.43E-02
36GO:0010287: plastoglobule1.76E-02
37GO:0005871: kinesin complex1.82E-02
38GO:0009522: photosystem I2.14E-02
39GO:0009295: nucleoid2.83E-02
40GO:0005778: peroxisomal membrane2.83E-02
41GO:0010319: stromule2.83E-02
42GO:0009536: plastid3.95E-02
43GO:0015934: large ribosomal subunit4.11E-02
44GO:0031902: late endosome membrane4.95E-02
45GO:0031201: SNARE complex4.95E-02
Gene type



Gene DE type