Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT1G73110

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0006437: tyrosyl-tRNA aminoacylation0.00E+00
2GO:0070125: mitochondrial translational elongation0.00E+00
3GO:0002184: cytoplasmic translational termination0.00E+00
4GO:0006780: uroporphyrinogen III biosynthetic process0.00E+00
5GO:0051503: adenine nucleotide transport0.00E+00
6GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation0.00E+00
7GO:0033494: ferulate metabolic process0.00E+00
8GO:0006428: isoleucyl-tRNA aminoacylation0.00E+00
9GO:0015805: S-adenosyl-L-methionine transport0.00E+00
10GO:0042407: cristae formation0.00E+00
11GO:0070272: proton-transporting ATP synthase complex biogenesis0.00E+00
12GO:0006573: valine metabolic process0.00E+00
13GO:0006399: tRNA metabolic process0.00E+00
14GO:0009658: chloroplast organization1.93E-09
15GO:0032544: plastid translation3.13E-09
16GO:0006412: translation5.18E-07
17GO:0015976: carbon utilization8.37E-07
18GO:0015979: photosynthesis1.55E-05
19GO:0042254: ribosome biogenesis4.19E-05
20GO:2000122: negative regulation of stomatal complex development9.01E-05
21GO:0006546: glycine catabolic process9.01E-05
22GO:0010037: response to carbon dioxide9.01E-05
23GO:0010207: photosystem II assembly1.15E-04
24GO:0010020: chloroplast fission1.15E-04
25GO:0042549: photosystem II stabilization2.01E-04
26GO:0010190: cytochrome b6f complex assembly2.01E-04
27GO:0061077: chaperone-mediated protein folding2.46E-04
28GO:0009955: adaxial/abaxial pattern specification2.71E-04
29GO:0042026: protein refolding2.71E-04
30GO:0006427: histidyl-tRNA aminoacylation3.86E-04
31GO:1904966: positive regulation of vitamin E biosynthetic process3.86E-04
32GO:0042547: cell wall modification involved in multidimensional cell growth3.86E-04
33GO:1904964: positive regulation of phytol biosynthetic process3.86E-04
34GO:0006551: leucine metabolic process3.86E-04
35GO:0042371: vitamin K biosynthetic process3.86E-04
36GO:0016117: carotenoid biosynthetic process3.91E-04
37GO:0006457: protein folding4.03E-04
38GO:0000413: protein peptidyl-prolyl isomerization4.33E-04
39GO:0009657: plastid organization5.37E-04
40GO:0045454: cell redox homeostasis5.75E-04
41GO:0010583: response to cyclopentenone6.81E-04
42GO:0006779: porphyrin-containing compound biosynthetic process7.60E-04
43GO:2000123: positive regulation of stomatal complex development8.38E-04
44GO:0010270: photosystem II oxygen evolving complex assembly8.38E-04
45GO:0043039: tRNA aminoacylation8.38E-04
46GO:0006695: cholesterol biosynthetic process8.38E-04
47GO:1902326: positive regulation of chlorophyll biosynthetic process8.38E-04
48GO:0006423: cysteinyl-tRNA aminoacylation8.38E-04
49GO:0006782: protoporphyrinogen IX biosynthetic process8.85E-04
50GO:0010027: thylakoid membrane organization9.96E-04
51GO:0009773: photosynthetic electron transport in photosystem I1.02E-03
52GO:0043085: positive regulation of catalytic activity1.02E-03
53GO:0006415: translational termination1.02E-03
54GO:0006810: transport1.04E-03
55GO:0042742: defense response to bacterium1.19E-03
56GO:0006954: inflammatory response1.36E-03
57GO:0006518: peptide metabolic process1.36E-03
58GO:0010581: regulation of starch biosynthetic process1.36E-03
59GO:0006696: ergosterol biosynthetic process1.36E-03
60GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway1.80E-03
61GO:0051085: chaperone mediated protein folding requiring cofactor1.96E-03
62GO:0006241: CTP biosynthetic process1.96E-03
63GO:0046902: regulation of mitochondrial membrane permeability1.96E-03
64GO:0006424: glutamyl-tRNA aminoacylation1.96E-03
65GO:0006165: nucleoside diphosphate phosphorylation1.96E-03
66GO:0006228: UTP biosynthetic process1.96E-03
67GO:0009855: determination of bilateral symmetry1.96E-03
68GO:0043572: plastid fission1.96E-03
69GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis1.96E-03
70GO:2001141: regulation of RNA biosynthetic process1.96E-03
71GO:0019344: cysteine biosynthetic process2.06E-03
72GO:0006418: tRNA aminoacylation for protein translation2.27E-03
73GO:0009735: response to cytokinin2.28E-03
74GO:0006631: fatty acid metabolic process2.34E-03
75GO:0006808: regulation of nitrogen utilization2.63E-03
76GO:0019464: glycine decarboxylation via glycine cleavage system2.63E-03
77GO:0009765: photosynthesis, light harvesting2.63E-03
78GO:0006183: GTP biosynthetic process2.63E-03
79GO:2000038: regulation of stomatal complex development2.63E-03
80GO:0031365: N-terminal protein amino acid modification3.37E-03
81GO:0016123: xanthophyll biosynthetic process3.37E-03
82GO:0010375: stomatal complex patterning3.37E-03
83GO:0016120: carotene biosynthetic process3.37E-03
84GO:0032543: mitochondrial translation3.37E-03
85GO:0016554: cytidine to uridine editing4.17E-03
86GO:0006796: phosphate-containing compound metabolic process4.17E-03
87GO:0006828: manganese ion transport4.17E-03
88GO:0032973: amino acid export4.17E-03
89GO:0010555: response to mannitol5.02E-03
90GO:0010014: meristem initiation5.02E-03
91GO:0042372: phylloquinone biosynthetic process5.02E-03
92GO:0080060: integument development5.02E-03
93GO:0009612: response to mechanical stimulus5.02E-03
94GO:0009082: branched-chain amino acid biosynthetic process5.02E-03
95GO:0006458: 'de novo' protein folding5.02E-03
96GO:1901259: chloroplast rRNA processing5.02E-03
97GO:0009099: valine biosynthetic process5.02E-03
98GO:0009854: oxidative photosynthetic carbon pathway5.02E-03
99GO:0009610: response to symbiotic fungus5.94E-03
100GO:0043090: amino acid import5.94E-03
101GO:0009645: response to low light intensity stimulus5.94E-03
102GO:0007267: cell-cell signaling6.51E-03
103GO:0007155: cell adhesion6.90E-03
104GO:0009642: response to light intensity6.90E-03
105GO:0009690: cytokinin metabolic process6.90E-03
106GO:0009409: response to cold7.06E-03
107GO:0016126: sterol biosynthetic process7.31E-03
108GO:0009932: cell tip growth7.92E-03
109GO:0071482: cellular response to light stimulus7.92E-03
110GO:0019430: removal of superoxide radicals7.92E-03
111GO:0009097: isoleucine biosynthetic process7.92E-03
112GO:0009627: systemic acquired resistance8.17E-03
113GO:0042128: nitrate assimilation8.17E-03
114GO:0015995: chlorophyll biosynthetic process8.62E-03
115GO:0009793: embryo development ending in seed dormancy8.72E-03
116GO:0006098: pentose-phosphate shunt8.99E-03
117GO:0010206: photosystem II repair8.99E-03
118GO:0045337: farnesyl diphosphate biosynthetic process8.99E-03
119GO:0080144: amino acid homeostasis8.99E-03
120GO:0033384: geranyl diphosphate biosynthetic process8.99E-03
121GO:0006783: heme biosynthetic process8.99E-03
122GO:0009817: defense response to fungus, incompatible interaction9.56E-03
123GO:0018298: protein-chromophore linkage9.56E-03
124GO:0009790: embryo development9.68E-03
125GO:0043067: regulation of programmed cell death1.01E-02
126GO:0042761: very long-chain fatty acid biosynthetic process1.01E-02
127GO:1900865: chloroplast RNA modification1.01E-02
128GO:0010380: regulation of chlorophyll biosynthetic process1.01E-02
129GO:0006633: fatty acid biosynthetic process1.06E-02
130GO:0010119: regulation of stomatal movement1.11E-02
131GO:0009870: defense response signaling pathway, resistance gene-dependent1.13E-02
132GO:0006535: cysteine biosynthetic process from serine1.13E-02
133GO:0043069: negative regulation of programmed cell death1.13E-02
134GO:0009637: response to blue light1.21E-02
135GO:0009853: photorespiration1.21E-02
136GO:0006816: calcium ion transport1.25E-02
137GO:0019684: photosynthesis, light reaction1.25E-02
138GO:0010072: primary shoot apical meristem specification1.25E-02
139GO:0009089: lysine biosynthetic process via diaminopimelate1.25E-02
140GO:0009073: aromatic amino acid family biosynthetic process1.25E-02
141GO:0006352: DNA-templated transcription, initiation1.25E-02
142GO:0006790: sulfur compound metabolic process1.38E-02
143GO:0045037: protein import into chloroplast stroma1.38E-02
144GO:0006839: mitochondrial transport1.39E-02
145GO:0009725: response to hormone1.51E-02
146GO:0006094: gluconeogenesis1.51E-02
147GO:0009767: photosynthetic electron transport chain1.51E-02
148GO:0010114: response to red light1.57E-02
149GO:0010143: cutin biosynthetic process1.64E-02
150GO:0006508: proteolysis1.67E-02
151GO:0046854: phosphatidylinositol phosphorylation1.78E-02
152GO:0010167: response to nitrate1.78E-02
153GO:0090351: seedling development1.78E-02
154GO:0019762: glucosinolate catabolic process1.92E-02
155GO:0010025: wax biosynthetic process1.92E-02
156GO:0006636: unsaturated fatty acid biosynthetic process1.92E-02
157GO:0009944: polarity specification of adaxial/abaxial axis2.07E-02
158GO:0000027: ribosomal large subunit assembly2.07E-02
159GO:0055114: oxidation-reduction process2.14E-02
160GO:0007017: microtubule-based process2.22E-02
161GO:0009768: photosynthesis, light harvesting in photosystem I2.22E-02
162GO:0009814: defense response, incompatible interaction2.53E-02
163GO:0006730: one-carbon metabolic process2.53E-02
164GO:0007005: mitochondrion organization2.53E-02
165GO:0080092: regulation of pollen tube growth2.53E-02
166GO:0009411: response to UV2.69E-02
167GO:0006284: base-excision repair2.86E-02
168GO:0019722: calcium-mediated signaling2.86E-02
169GO:0042335: cuticle development3.20E-02
170GO:0000271: polysaccharide biosynthetic process3.20E-02
171GO:0045489: pectin biosynthetic process3.38E-02
172GO:0006662: glycerol ether metabolic process3.38E-02
173GO:0010197: polar nucleus fusion3.38E-02
174GO:0007018: microtubule-based movement3.55E-02
175GO:0032502: developmental process4.11E-02
176GO:1901657: glycosyl compound metabolic process4.30E-02
RankGO TermAdjusted P value
1GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity0.00E+00
2GO:0004852: uroporphyrinogen-III synthase activity0.00E+00
3GO:0008942: nitrite reductase [NAD(P)H] activity0.00E+00
4GO:0016767: geranylgeranyl-diphosphate geranylgeranyltransferase activity0.00E+00
5GO:0047889: ferredoxin-nitrate reductase activity0.00E+00
6GO:0009974: zeinoxanthin epsilon hydroxylase activity0.00E+00
7GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity0.00E+00
8GO:0008887: glycerate kinase activity0.00E+00
9GO:0048307: ferredoxin-nitrite reductase activity0.00E+00
10GO:0050613: delta14-sterol reductase activity0.00E+00
11GO:0045435: lycopene epsilon cyclase activity0.00E+00
12GO:0004822: isoleucine-tRNA ligase activity0.00E+00
13GO:0050421: nitrite reductase (NO-forming) activity0.00E+00
14GO:0008756: o-succinylbenzoate-CoA ligase activity0.00E+00
15GO:0046905: phytoene synthase activity0.00E+00
16GO:0019843: rRNA binding3.01E-11
17GO:0003755: peptidyl-prolyl cis-trans isomerase activity4.86E-10
18GO:0003735: structural constituent of ribosome1.10E-07
19GO:0051920: peroxiredoxin activity6.21E-06
20GO:0005528: FK506 binding8.79E-06
21GO:0016209: antioxidant activity1.48E-05
22GO:0016149: translation release factor activity, codon specific5.10E-05
23GO:0004089: carbonate dehydratase activity9.60E-05
24GO:0080132: fatty acid alpha-hydroxylase activity3.86E-04
25GO:0004831: tyrosine-tRNA ligase activity3.86E-04
26GO:0004655: porphobilinogen synthase activity3.86E-04
27GO:0003838: sterol 24-C-methyltransferase activity3.86E-04
28GO:0004821: histidine-tRNA ligase activity3.86E-04
29GO:0003984: acetolactate synthase activity3.86E-04
30GO:0051996: squalene synthase activity3.86E-04
31GO:0003747: translation release factor activity6.44E-04
32GO:0042389: omega-3 fatty acid desaturase activity8.38E-04
33GO:0004326: tetrahydrofolylpolyglutamate synthase activity8.38E-04
34GO:0004047: aminomethyltransferase activity8.38E-04
35GO:0004817: cysteine-tRNA ligase activity8.38E-04
36GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity8.38E-04
37GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase8.38E-04
38GO:0004310: farnesyl-diphosphate farnesyltransferase activity8.38E-04
39GO:0050017: L-3-cyanoalanine synthase activity8.38E-04
40GO:0008047: enzyme activator activity8.85E-04
41GO:0044183: protein binding involved in protein folding1.02E-03
42GO:0051082: unfolded protein binding1.12E-03
43GO:0031072: heat shock protein binding1.32E-03
44GO:0070330: aromatase activity1.36E-03
45GO:0017150: tRNA dihydrouridine synthase activity1.36E-03
46GO:0050734: hydroxycinnamoyltransferase activity1.36E-03
47GO:0002161: aminoacyl-tRNA editing activity1.36E-03
48GO:0004148: dihydrolipoyl dehydrogenase activity1.36E-03
49GO:0030267: glyoxylate reductase (NADP) activity1.36E-03
50GO:0008097: 5S rRNA binding1.96E-03
51GO:0004375: glycine dehydrogenase (decarboxylating) activity1.96E-03
52GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor1.96E-03
53GO:0004550: nucleoside diphosphate kinase activity1.96E-03
54GO:0043023: ribosomal large subunit binding1.96E-03
55GO:0004659: prenyltransferase activity2.63E-03
56GO:0001053: plastid sigma factor activity2.63E-03
57GO:0008574: ATP-dependent microtubule motor activity, plus-end-directed2.63E-03
58GO:0004045: aminoacyl-tRNA hydrolase activity2.63E-03
59GO:0016987: sigma factor activity2.63E-03
60GO:0043495: protein anchor2.63E-03
61GO:0051537: 2 iron, 2 sulfur cluster binding2.87E-03
62GO:0008725: DNA-3-methyladenine glycosylase activity3.37E-03
63GO:0016773: phosphotransferase activity, alcohol group as acceptor3.37E-03
64GO:0018685: alkane 1-monooxygenase activity3.37E-03
65GO:0004040: amidase activity3.37E-03
66GO:0005471: ATP:ADP antiporter activity3.37E-03
67GO:0004812: aminoacyl-tRNA ligase activity3.51E-03
68GO:0016740: transferase activity4.03E-03
69GO:0004332: fructose-bisphosphate aldolase activity4.17E-03
70GO:0016208: AMP binding4.17E-03
71GO:0016462: pyrophosphatase activity4.17E-03
72GO:0004791: thioredoxin-disulfide reductase activity4.40E-03
73GO:0004124: cysteine synthase activity5.02E-03
74GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity5.02E-03
75GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity5.02E-03
76GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity5.02E-03
77GO:0102391: decanoate--CoA ligase activity5.02E-03
78GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor5.75E-03
79GO:0008235: metalloexopeptidase activity5.94E-03
80GO:0004427: inorganic diphosphatase activity5.94E-03
81GO:0019899: enzyme binding5.94E-03
82GO:0004467: long-chain fatty acid-CoA ligase activity5.94E-03
83GO:0016722: oxidoreductase activity, oxidizing metal ions6.51E-03
84GO:0004033: aldo-keto reductase (NADP) activity6.90E-03
85GO:0016168: chlorophyll binding7.73E-03
86GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water7.92E-03
87GO:0102483: scopolin beta-glucosidase activity8.62E-03
88GO:0004337: geranyltranstransferase activity8.99E-03
89GO:0008236: serine-type peptidase activity9.08E-03
90GO:0005384: manganese ion transmembrane transporter activity1.01E-02
91GO:0004222: metalloendopeptidase activity1.06E-02
92GO:0004161: dimethylallyltranstransferase activity1.25E-02
93GO:0005089: Rho guanyl-nucleotide exchange factor activity1.25E-02
94GO:0008794: arsenate reductase (glutaredoxin) activity1.25E-02
95GO:0004177: aminopeptidase activity1.25E-02
96GO:0008422: beta-glucosidase activity1.33E-02
97GO:0000049: tRNA binding1.38E-02
98GO:0009055: electron carrier activity1.40E-02
99GO:0015095: magnesium ion transmembrane transporter activity1.51E-02
100GO:0042802: identical protein binding1.63E-02
101GO:0005507: copper ion binding1.70E-02
102GO:0031409: pigment binding1.92E-02
103GO:0004601: peroxidase activity2.09E-02
104GO:0019706: protein-cysteine S-palmitoyltransferase activity2.37E-02
105GO:0004176: ATP-dependent peptidase activity2.37E-02
106GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity2.53E-02
107GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups2.59E-02
108GO:0022891: substrate-specific transmembrane transporter activity2.69E-02
109GO:0030570: pectate lyase activity2.69E-02
110GO:0003756: protein disulfide isomerase activity2.86E-02
111GO:0047134: protein-disulfide reductase activity3.03E-02
112GO:0015035: protein disulfide oxidoreductase activity3.11E-02
113GO:0050662: coenzyme binding3.55E-02
114GO:0019901: protein kinase binding3.74E-02
115GO:0016762: xyloglucan:xyloglucosyl transferase activity3.92E-02
116GO:0000156: phosphorelay response regulator activity4.30E-02
117GO:0008483: transaminase activity4.69E-02
118GO:0008237: metallopeptidase activity4.69E-02
119GO:0005200: structural constituent of cytoskeleton4.69E-02
120GO:0016597: amino acid binding4.89E-02
RankGO TermAdjusted P value
1GO:0009571: proplastid stroma0.00E+00
2GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex0.00E+00
3GO:0044391: ribosomal subunit0.00E+00
4GO:0005948: acetolactate synthase complex0.00E+00
5GO:0009507: chloroplast3.55E-52
6GO:0009570: chloroplast stroma1.03E-38
7GO:0009941: chloroplast envelope1.69E-32
8GO:0009535: chloroplast thylakoid membrane7.63E-21
9GO:0009543: chloroplast thylakoid lumen3.15E-20
10GO:0009579: thylakoid3.57E-17
11GO:0031977: thylakoid lumen1.21E-13
12GO:0005840: ribosome1.16E-08
13GO:0009534: chloroplast thylakoid2.54E-07
14GO:0009654: photosystem II oxygen evolving complex2.97E-07
15GO:0048046: apoplast1.06E-06
16GO:0046658: anchored component of plasma membrane2.49E-05
17GO:0019898: extrinsic component of membrane5.01E-05
18GO:0010319: stromule9.25E-05
19GO:0030095: chloroplast photosystem II1.15E-04
20GO:0031225: anchored component of membrane1.77E-04
21GO:0009706: chloroplast inner membrane1.91E-04
22GO:0009344: nitrite reductase complex [NAD(P)H]3.86E-04
23GO:0031969: chloroplast membrane3.97E-04
24GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)6.44E-04
25GO:0009536: plastid6.51E-04
26GO:0042170: plastid membrane8.38E-04
27GO:0000311: plastid large ribosomal subunit1.16E-03
28GO:0015934: large ribosomal subunit1.67E-03
29GO:0005875: microtubule associated complex1.85E-03
30GO:0005960: glycine cleavage complex1.96E-03
31GO:0042651: thylakoid membrane2.27E-03
32GO:0009523: photosystem II4.71E-03
33GO:0009533: chloroplast stromal thylakoid5.94E-03
34GO:0010287: plastoglobule7.41E-03
35GO:0009539: photosystem II reaction center7.92E-03
36GO:0022626: cytosolic ribosome8.52E-03
37GO:0005763: mitochondrial small ribosomal subunit8.99E-03
38GO:0045298: tubulin complex8.99E-03
39GO:0016020: membrane1.09E-02
40GO:0016324: apical plasma membrane1.13E-02
41GO:0031012: extracellular matrix1.51E-02
42GO:0009508: plastid chromosome1.51E-02
43GO:0030659: cytoplasmic vesicle membrane1.64E-02
44GO:0009505: plant-type cell wall1.68E-02
45GO:0030076: light-harvesting complex1.78E-02
46GO:0030176: integral component of endoplasmic reticulum membrane1.78E-02
47GO:0015935: small ribosomal subunit2.37E-02
48GO:0009532: plastid stroma2.37E-02
49GO:0005874: microtubule2.62E-02
50GO:0005871: kinesin complex3.03E-02
51GO:0009522: photosystem I3.55E-02
52GO:0005743: mitochondrial inner membrane4.05E-02
53GO:0009295: nucleoid4.69E-02
54GO:0005778: peroxisomal membrane4.69E-02
55GO:0005759: mitochondrial matrix4.73E-02
Gene type



Gene DE type