co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G73060

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation	0.00E+00
2	GO:0006428: isoleucyl-tRNA aminoacylation	0.00E+00
3	GO:0042407: cristae formation	0.00E+00
4	GO:0005996: monosaccharide metabolic process	0.00E+00
5	GO:0007638: mechanosensory behavior	0.00E+00
6	GO:0070272: proton-transporting ATP synthase complex biogenesis	0.00E+00
7	GO:0006437: tyrosyl-tRNA aminoacylation	0.00E+00
8	GO:0009658: chloroplast organization	9.91E-07
9	GO:0019253: reductive pentose-phosphate cycle	1.74E-06
10	GO:0015979: photosynthesis	3.67E-06
11	GO:0030388: fructose 1,6-bisphosphate metabolic process	3.96E-06
12	GO:0032544: plastid translation	1.09E-05
13	GO:0006000: fructose metabolic process	1.41E-05
14	GO:0009773: photosynthetic electron transport in photosystem I	3.39E-05
15	GO:0018119: peptidyl-cysteine S-nitrosylation	3.39E-05
16	GO:0006546: glycine catabolic process	5.68E-05
17	GO:0006418: tRNA aminoacylation for protein translation	1.22E-04
18	GO:0010190: cytochrome b6f complex assembly	1.30E-04
19	GO:0061077: chaperone-mediated protein folding	1.41E-04
20	GO:0016117: carotenoid biosynthetic process	2.29E-04
21	GO:0045454: cell redox homeostasis	2.46E-04
22	GO:0016031: tRNA import into mitochondrion	2.94E-04
23	GO:0006002: fructose 6-phosphate metabolic process	3.62E-04
24	GO:0006423: cysteinyl-tRNA aminoacylation	6.45E-04
25	GO:2000123: positive regulation of stomatal complex development	6.45E-04
26	GO:0010270: photosystem II oxygen evolving complex assembly	6.45E-04
27	GO:0043039: tRNA aminoacylation	6.45E-04
28	GO:0006415: translational termination	6.94E-04
29	GO:0018298: protein-chromophore linkage	8.44E-04
30	GO:0006094: gluconeogenesis	8.98E-04
31	GO:0005986: sucrose biosynthetic process	8.98E-04
32	GO:0009409: response to cold	9.31E-04
33	GO:0010020: chloroplast fission	1.01E-03
34	GO:0009735: response to cytokinin	1.02E-03
35	GO:0010581: regulation of starch biosynthetic process	1.04E-03
36	GO:0006518: peptide metabolic process	1.04E-03
37	GO:0006433: prolyl-tRNA aminoacylation	1.04E-03
38	GO:0071492: cellular response to UV-A	1.04E-03
39	GO:0006696: ergosterol biosynthetic process	1.04E-03
40	GO:0006065: UDP-glucuronate biosynthetic process	1.04E-03
41	GO:0006810: transport	1.13E-03
42	GO:0046686: response to cadmium ion	1.30E-03
43	GO:0045490: pectin catabolic process	1.39E-03
44	GO:0042742: defense response to bacterium	1.50E-03
45	GO:0006424: glutamyl-tRNA aminoacylation	1.50E-03
46	GO:0043572: plastid fission	1.50E-03
47	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	1.50E-03
48	GO:0007231: osmosensory signaling pathway	1.50E-03
49	GO:0009768: photosynthesis, light harvesting in photosystem I	1.53E-03
50	GO:0045727: positive regulation of translation	2.01E-03
51	GO:2000122: negative regulation of stomatal complex development	2.01E-03
52	GO:0033500: carbohydrate homeostasis	2.01E-03
53	GO:2000038: regulation of stomatal complex development	2.01E-03
54	GO:0010037: response to carbon dioxide	2.01E-03
55	GO:0006542: glutamine biosynthetic process	2.01E-03
56	GO:0010109: regulation of photosynthesis	2.01E-03
57	GO:0019676: ammonia assimilation cycle	2.01E-03
58	GO:0015976: carbon utilization	2.01E-03
59	GO:0071486: cellular response to high light intensity	2.01E-03
60	GO:0019464: glycine decarboxylation via glycine cleavage system	2.01E-03
61	GO:0009765: photosynthesis, light harvesting	2.01E-03
62	GO:0010375: stomatal complex patterning	2.56E-03
63	GO:0016120: carotene biosynthetic process	2.56E-03
64	GO:0032543: mitochondrial translation	2.56E-03
65	GO:0010236: plastoquinone biosynthetic process	2.56E-03
66	GO:0031365: N-terminal protein amino acid modification	2.56E-03
67	GO:0016123: xanthophyll biosynthetic process	2.56E-03
68	GO:0016554: cytidine to uridine editing	3.16E-03
69	GO:0006796: phosphate-containing compound metabolic process	3.16E-03
70	GO:0033365: protein localization to organelle	3.16E-03
71	GO:0009635: response to herbicide	3.16E-03
72	GO:0006555: methionine metabolic process	3.16E-03
73	GO:0042026: protein refolding	3.81E-03
74	GO:0006458: 'de novo' protein folding	3.81E-03
75	GO:1901259: chloroplast rRNA processing	3.81E-03
76	GO:0009854: oxidative photosynthetic carbon pathway	3.81E-03
77	GO:0010555: response to mannitol	3.81E-03
78	GO:0009955: adaxial/abaxial pattern specification	3.81E-03
79	GO:0009645: response to low light intensity stimulus	4.49E-03
80	GO:0010027: thylakoid membrane organization	4.88E-03
81	GO:0009819: drought recovery	5.21E-03
82	GO:0009642: response to light intensity	5.21E-03
83	GO:0019430: removal of superoxide radicals	5.98E-03
84	GO:0009657: plastid organization	5.98E-03
85	GO:0017004: cytochrome complex assembly	5.98E-03
86	GO:0048481: plant ovule development	6.37E-03
87	GO:0010206: photosystem II repair	6.77E-03
88	GO:0048589: developmental growth	6.77E-03
89	GO:1900865: chloroplast RNA modification	7.60E-03
90	GO:0010380: regulation of chlorophyll biosynthetic process	7.60E-03
91	GO:0043067: regulation of programmed cell death	7.60E-03
92	GO:0035999: tetrahydrofolate interconversion	7.60E-03
93	GO:0016051: carbohydrate biosynthetic process	8.08E-03
94	GO:0043069: negative regulation of programmed cell death	8.48E-03
95	GO:0006259: DNA metabolic process	8.48E-03
96	GO:0006816: calcium ion transport	9.38E-03
97	GO:0006265: DNA topological change	9.38E-03
98	GO:0009073: aromatic amino acid family biosynthetic process	9.38E-03
99	GO:0043085: positive regulation of catalytic activity	9.38E-03
100	GO:0000272: polysaccharide catabolic process	9.38E-03
101	GO:0006631: fatty acid metabolic process	9.61E-03
102	GO:0006790: sulfur compound metabolic process	1.03E-02
103	GO:0009644: response to high light intensity	1.13E-02
104	GO:0050826: response to freezing	1.13E-02
105	GO:0009767: photosynthetic electron transport chain	1.13E-02
106	GO:0010207: photosystem II assembly	1.23E-02
107	GO:0007034: vacuolar transport	1.23E-02
108	GO:0005985: sucrose metabolic process	1.33E-02
109	GO:0070588: calcium ion transmembrane transport	1.33E-02
110	GO:0046854: phosphatidylinositol phosphorylation	1.33E-02
111	GO:0007010: cytoskeleton organization	1.55E-02
112	GO:0019344: cysteine biosynthetic process	1.55E-02
113	GO:0007017: microtubule-based process	1.66E-02
114	GO:0006096: glycolytic process	1.67E-02
115	GO:0006508: proteolysis	1.69E-02
116	GO:0055114: oxidation-reduction process	1.75E-02
117	GO:0016226: iron-sulfur cluster assembly	1.90E-02
118	GO:0006730: one-carbon metabolic process	1.90E-02
119	GO:0007005: mitochondrion organization	1.90E-02
120	GO:0080092: regulation of pollen tube growth	1.90E-02
121	GO:0042545: cell wall modification	1.95E-02
122	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	2.02E-02
123	GO:0009294: DNA mediated transformation	2.02E-02
124	GO:0000271: polysaccharide biosynthetic process	2.40E-02
125	GO:0000413: protein peptidyl-prolyl isomerization	2.40E-02
126	GO:0042631: cellular response to water deprivation	2.40E-02
127	GO:0045489: pectin biosynthetic process	2.53E-02
128	GO:0010197: polar nucleus fusion	2.53E-02
129	GO:0007059: chromosome segregation	2.66E-02
130	GO:0009791: post-embryonic development	2.80E-02
131	GO:0019252: starch biosynthetic process	2.80E-02
132	GO:0071554: cell wall organization or biogenesis	2.94E-02
133	GO:0008152: metabolic process	3.02E-02
134	GO:0007264: small GTPase mediated signal transduction	3.08E-02
135	GO:0005975: carbohydrate metabolic process	3.12E-02
136	GO:1901657: glycosyl compound metabolic process	3.22E-02
137	GO:0006413: translational initiation	3.24E-02
138	GO:0009828: plant-type cell wall loosening	3.37E-02
139	GO:0007267: cell-cell signaling	3.51E-02
140	GO:0016126: sterol biosynthetic process	3.82E-02
141	GO:0009817: defense response to fungus, incompatible interaction	4.61E-02
142	GO:0048767: root hair elongation	4.77E-02
143	GO:0000160: phosphorelay signal transduction system	4.77E-02
144	GO:0009813: flavonoid biosynthetic process	4.77E-02
145	GO:0009407: toxin catabolic process	4.94E-02
146	GO:0010218: response to far red light	4.94E-02

Rank	GO Term	Adjusted P value
1	GO:0008887: glycerate kinase activity	0.00E+00
2	GO:0045435: lycopene epsilon cyclase activity	0.00E+00
3	GO:0050613: delta14-sterol reductase activity	0.00E+00
4	GO:0004822: isoleucine-tRNA ligase activity	0.00E+00
5	GO:0050278: sedoheptulose-bisphosphatase activity	0.00E+00
6	GO:0046905: phytoene synthase activity	0.00E+00
7	GO:0016767: geranylgeranyl-diphosphate geranylgeranyltransferase activity	0.00E+00
8	GO:0009974: zeinoxanthin epsilon hydroxylase activity	0.00E+00
9	GO:0051920: peroxiredoxin activity	2.21E-08
10	GO:0016209: antioxidant activity	7.86E-08
11	GO:0004618: phosphoglycerate kinase activity	3.96E-06
12	GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity	3.96E-06
13	GO:0004148: dihydrolipoyl dehydrogenase activity	1.41E-05
14	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	2.69E-05
15	GO:0016149: translation release factor activity, codon specific	3.17E-05
16	GO:0005528: FK506 binding	1.05E-04
17	GO:0004723: calcium-dependent protein serine/threonine phosphatase activity	1.78E-04
18	GO:0004812: aminoacyl-tRNA ligase activity	2.29E-04
19	GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity	2.94E-04
20	GO:0080132: fatty acid alpha-hydroxylase activity	2.94E-04
21	GO:0004831: tyrosine-tRNA ligase activity	2.94E-04
22	GO:0051996: squalene synthase activity	2.94E-04
23	GO:0004489: methylenetetrahydrofolate reductase (NAD(P)H) activity	2.94E-04
24	GO:0047259: glucomannan 4-beta-mannosyltransferase activity	2.94E-04
25	GO:0004560: alpha-L-fucosidase activity	2.94E-04
26	GO:0003747: translation release factor activity	4.36E-04
27	GO:0008967: phosphoglycolate phosphatase activity	6.45E-04
28	GO:0004310: farnesyl-diphosphate farnesyltransferase activity	6.45E-04
29	GO:0010297: heteropolysaccharide binding	6.45E-04
30	GO:0004047: aminomethyltransferase activity	6.45E-04
31	GO:0004817: cysteine-tRNA ligase activity	6.45E-04
32	GO:0016168: chlorophyll binding	6.48E-04
33	GO:0019843: rRNA binding	8.60E-04
34	GO:0004827: proline-tRNA ligase activity	1.04E-03
35	GO:0003913: DNA photolyase activity	1.04E-03
36	GO:0002161: aminoacyl-tRNA editing activity	1.04E-03
37	GO:0005504: fatty acid binding	1.04E-03
38	GO:0030267: glyoxylate reductase (NADP) activity	1.04E-03
39	GO:0003979: UDP-glucose 6-dehydrogenase activity	1.04E-03
40	GO:0031409: pigment binding	1.25E-03
41	GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor	1.50E-03
42	GO:0004375: glycine dehydrogenase (decarboxylating) activity	1.50E-03
43	GO:0030570: pectate lyase activity	2.00E-03
44	GO:1990137: plant seed peroxidase activity	2.01E-03
45	GO:0045430: chalcone isomerase activity	2.01E-03
46	GO:0004659: prenyltransferase activity	2.01E-03
47	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	2.01E-03
48	GO:0016773: phosphotransferase activity, alcohol group as acceptor	2.56E-03
49	GO:0030414: peptidase inhibitor activity	2.56E-03
50	GO:0004356: glutamate-ammonia ligase activity	2.56E-03
51	GO:0004601: peroxidase activity	2.71E-03
52	GO:0042578: phosphoric ester hydrolase activity	3.16E-03
53	GO:0016462: pyrophosphatase activity	3.16E-03
54	GO:0080030: methyl indole-3-acetate esterase activity	3.16E-03
55	GO:0030599: pectinesterase activity	3.30E-03
56	GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity	3.81E-03
57	GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity	3.81E-03
58	GO:0051753: mannan synthase activity	3.81E-03
59	GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity	3.81E-03
60	GO:0005200: structural constituent of cytoskeleton	4.35E-03
61	GO:0004427: inorganic diphosphatase activity	4.49E-03
62	GO:0009881: photoreceptor activity	4.49E-03
63	GO:0008235: metalloexopeptidase activity	4.49E-03
64	GO:0004033: aldo-keto reductase (NADP) activity	5.21E-03
65	GO:0003918: DNA topoisomerase type II (ATP-hydrolyzing) activity	5.98E-03
66	GO:0008135: translation factor activity, RNA binding	5.98E-03
67	GO:0003924: GTPase activity	6.81E-03
68	GO:0004222: metalloendopeptidase activity	7.03E-03
69	GO:0009055: electron carrier activity	7.58E-03
70	GO:0003746: translation elongation factor activity	8.08E-03
71	GO:0008047: enzyme activator activity	8.48E-03
72	GO:0046872: metal ion binding	9.09E-03
73	GO:0005089: Rho guanyl-nucleotide exchange factor activity	9.38E-03
74	GO:0004177: aminopeptidase activity	9.38E-03
75	GO:0044183: protein binding involved in protein folding	9.38E-03
76	GO:0000049: tRNA binding	1.03E-02
77	GO:0004565: beta-galactosidase activity	1.13E-02
78	GO:0015266: protein channel activity	1.13E-02
79	GO:0004089: carbonate dehydratase activity	1.13E-02
80	GO:0031072: heat shock protein binding	1.13E-02
81	GO:0005262: calcium channel activity	1.13E-02
82	GO:0005198: structural molecule activity	1.17E-02
83	GO:0005509: calcium ion binding	1.34E-02
84	GO:0051536: iron-sulfur cluster binding	1.55E-02
85	GO:0004857: enzyme inhibitor activity	1.55E-02
86	GO:0045330: aspartyl esterase activity	1.56E-02
87	GO:0004176: ATP-dependent peptidase activity	1.78E-02
88	GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity	1.90E-02
89	GO:0051082: unfolded protein binding	2.01E-02
90	GO:0022891: substrate-specific transmembrane transporter activity	2.02E-02
91	GO:0005524: ATP binding	2.07E-02
92	GO:0016787: hydrolase activity	2.14E-02
93	GO:0003756: protein disulfide isomerase activity	2.14E-02
94	GO:0016740: transferase activity	2.18E-02
95	GO:0016758: transferase activity, transferring hexosyl groups	2.45E-02
96	GO:0050662: coenzyme binding	2.66E-02
97	GO:0004791: thioredoxin-disulfide reductase activity	2.66E-02
98	GO:0019901: protein kinase binding	2.80E-02
99	GO:0048038: quinone binding	2.94E-02
100	GO:0000156: phosphorelay response regulator activity	3.22E-02
101	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	3.22E-02
102	GO:0016759: cellulose synthase activity	3.37E-02
103	GO:0005525: GTP binding	3.39E-02
104	GO:0008483: transaminase activity	3.51E-02
105	GO:0016722: oxidoreductase activity, oxidizing metal ions	3.51E-02
106	GO:0008237: metallopeptidase activity	3.51E-02
107	GO:0016413: O-acetyltransferase activity	3.66E-02
108	GO:0003743: translation initiation factor activity	4.05E-02
109	GO:0009931: calcium-dependent protein serine/threonine kinase activity	4.13E-02
110	GO:0102483: scopolin beta-glucosidase activity	4.29E-02
111	GO:0030247: polysaccharide binding	4.29E-02
112	GO:0004683: calmodulin-dependent protein kinase activity	4.29E-02
113	GO:0000982: transcription factor activity, RNA polymerase II core promoter proximal region sequence-specific binding	4.44E-02
114	GO:0008236: serine-type peptidase activity	4.44E-02
115	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	4.61E-02

Rank	GO Term	Adjusted P value
1	GO:0009575: chromoplast stroma	0.00E+00
2	GO:0009507: chloroplast	1.13E-43
3	GO:0009570: chloroplast stroma	1.21E-27
4	GO:0009941: chloroplast envelope	3.29E-22
5	GO:0009535: chloroplast thylakoid membrane	1.07E-18
6	GO:0009579: thylakoid	9.91E-13
7	GO:0009543: chloroplast thylakoid lumen	9.20E-11
8	GO:0048046: apoplast	9.26E-09
9	GO:0010319: stromule	1.95E-06
10	GO:0010287: plastoglobule	1.16E-05
11	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	1.51E-05
12	GO:0031977: thylakoid lumen	1.52E-05
13	GO:0009534: chloroplast thylakoid	1.90E-05
14	GO:0009654: photosystem II oxygen evolving complex	1.22E-04
15	GO:0009782: photosystem I antenna complex	2.94E-04
16	GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex	2.94E-04
17	GO:0017101: aminoacyl-tRNA synthetase multienzyme complex	2.94E-04
18	GO:0009344: nitrite reductase complex [NAD(P)H]	2.94E-04
19	GO:0000427: plastid-encoded plastid RNA polymerase complex	6.45E-04
20	GO:0005618: cell wall	6.68E-04
21	GO:0030095: chloroplast photosystem II	1.01E-03
22	GO:0005853: eukaryotic translation elongation factor 1 complex	1.04E-03
23	GO:0030076: light-harvesting complex	1.13E-03
24	GO:0005960: glycine cleavage complex	1.50E-03
25	GO:0009330: DNA topoisomerase complex (ATP-hydrolyzing)	2.01E-03
26	GO:0009505: plant-type cell wall	2.46E-03
27	GO:0010168: ER body	3.16E-03
28	GO:0019898: extrinsic component of membrane	3.16E-03
29	GO:0031969: chloroplast membrane	3.77E-03
30	GO:0000815: ESCRT III complex	3.81E-03
31	GO:0009295: nucleoid	4.35E-03
32	GO:0009533: chloroplast stromal thylakoid	4.49E-03
33	GO:0009539: photosystem II reaction center	5.98E-03
34	GO:0005811: lipid particle	5.98E-03
35	GO:0045298: tubulin complex	6.77E-03
36	GO:0005763: mitochondrial small ribosomal subunit	6.77E-03
37	GO:0009536: plastid	7.32E-03
38	GO:0016324: apical plasma membrane	8.48E-03
39	GO:0046658: anchored component of plasma membrane	1.02E-02
40	GO:0009508: plastid chromosome	1.13E-02
41	GO:0030176: integral component of endoplasmic reticulum membrane	1.33E-02
42	GO:0005875: microtubule associated complex	1.44E-02
43	GO:0005874: microtubule	1.57E-02
44	GO:0042651: thylakoid membrane	1.66E-02
45	GO:0005840: ribosome	1.67E-02
46	GO:0009532: plastid stroma	1.78E-02
47	GO:0009706: chloroplast inner membrane	2.01E-02
48	GO:0005744: mitochondrial inner membrane presequence translocase complex	2.14E-02
49	GO:0009522: photosystem I	2.66E-02
50	GO:0009523: photosystem II	2.80E-02
51	GO:0016020: membrane	3.41E-02
52	GO:0005778: peroxisomal membrane	3.51E-02