co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G72610

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0033494: ferulate metabolic process	0.00E+00
2	GO:0097164: ammonium ion metabolic process	0.00E+00
3	GO:0045176: apical protein localization	0.00E+00
4	GO:0006412: translation	1.20E-13
5	GO:0042254: ribosome biogenesis	1.24E-08
6	GO:0015976: carbon utilization	5.24E-08
7	GO:0032544: plastid translation	1.56E-06
8	GO:2000122: negative regulation of stomatal complex development	1.47E-05
9	GO:0010037: response to carbon dioxide	1.47E-05
10	GO:0000413: protein peptidyl-prolyl isomerization	5.04E-05
11	GO:0009735: response to cytokinin	8.93E-05
12	GO:0010729: positive regulation of hydrogen peroxide biosynthetic process	1.33E-04
13	GO:0060627: regulation of vesicle-mediated transport	1.33E-04
14	GO:1904966: positive regulation of vitamin E biosynthetic process	1.33E-04
15	GO:1904964: positive regulation of phytol biosynthetic process	1.33E-04
16	GO:0042371: vitamin K biosynthetic process	1.33E-04
17	GO:0010411: xyloglucan metabolic process	1.71E-04
18	GO:0009725: response to hormone	3.02E-04
19	GO:2000123: positive regulation of stomatal complex development	3.07E-04
20	GO:1902326: positive regulation of chlorophyll biosynthetic process	3.07E-04
21	GO:0070981: L-asparagine biosynthetic process	3.07E-04
22	GO:0006529: asparagine biosynthetic process	3.07E-04
23	GO:0042546: cell wall biogenesis	4.02E-04
24	GO:0006833: water transport	4.27E-04
25	GO:0015840: urea transport	5.06E-04
26	GO:0006518: peptide metabolic process	5.06E-04
27	GO:0042742: defense response to bacterium	5.20E-04
28	GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis	7.24E-04
29	GO:0015979: photosynthesis	8.36E-04
30	GO:0009409: response to cold	9.47E-04
31	GO:2000038: regulation of stomatal complex development	9.59E-04
32	GO:0010375: stomatal complex patterning	1.21E-03
33	GO:0007267: cell-cell signaling	1.44E-03
34	GO:0042549: photosystem II stabilization	1.49E-03
35	GO:0048827: phyllome development	1.49E-03
36	GO:0009955: adaxial/abaxial pattern specification	1.78E-03
37	GO:1901259: chloroplast rRNA processing	1.78E-03
38	GO:0042372: phylloquinone biosynthetic process	1.78E-03
39	GO:0009612: response to mechanical stimulus	1.78E-03
40	GO:0006694: steroid biosynthetic process	1.78E-03
41	GO:0010555: response to mannitol	1.78E-03
42	GO:0009645: response to low light intensity stimulus	2.09E-03
43	GO:0010119: regulation of stomatal movement	2.41E-03
44	GO:0009642: response to light intensity	2.42E-03
45	GO:0046620: regulation of organ growth	2.42E-03
46	GO:0030091: protein repair	2.42E-03
47	GO:0009932: cell tip growth	2.77E-03
48	GO:0009808: lignin metabolic process	2.77E-03
49	GO:0009826: unidimensional cell growth	2.84E-03
50	GO:0006949: syncytium formation	3.89E-03
51	GO:0009870: defense response signaling pathway, resistance gene-dependent	3.89E-03
52	GO:0042538: hyperosmotic salinity response	4.25E-03
53	GO:0009773: photosynthetic electron transport in photosystem I	4.30E-03
54	GO:0045454: cell redox homeostasis	4.91E-03
55	GO:0006006: glucose metabolic process	5.15E-03
56	GO:0010229: inflorescence development	5.15E-03
57	GO:0010143: cutin biosynthetic process	5.60E-03
58	GO:0006541: glutamine metabolic process	5.60E-03
59	GO:0019253: reductive pentose-phosphate cycle	5.60E-03
60	GO:0010207: photosystem II assembly	5.60E-03
61	GO:0010540: basipetal auxin transport	5.60E-03
62	GO:0019762: glucosinolate catabolic process	6.53E-03
63	GO:0006636: unsaturated fatty acid biosynthetic process	6.53E-03
64	GO:0019344: cysteine biosynthetic process	7.01E-03
65	GO:0000027: ribosomal large subunit assembly	7.01E-03
66	GO:0061077: chaperone-mediated protein folding	8.02E-03
67	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	9.08E-03
68	GO:0019722: calcium-mediated signaling	9.63E-03
69	GO:0009733: response to auxin	1.02E-02
70	GO:0034220: ion transmembrane transport	1.08E-02
71	GO:0045490: pectin catabolic process	1.12E-02
72	GO:0009646: response to absence of light	1.19E-02
73	GO:0048825: cotyledon development	1.25E-02
74	GO:0002229: defense response to oomycetes	1.32E-02
75	GO:0016132: brassinosteroid biosynthetic process	1.32E-02
76	GO:0009416: response to light stimulus	1.33E-02
77	GO:0010583: response to cyclopentenone	1.38E-02
78	GO:0009630: gravitropism	1.38E-02
79	GO:1901657: glycosyl compound metabolic process	1.44E-02
80	GO:0009828: plant-type cell wall loosening	1.51E-02
81	GO:0006810: transport	1.52E-02
82	GO:0009911: positive regulation of flower development	1.71E-02
83	GO:0010027: thylakoid membrane organization	1.71E-02
84	GO:0055085: transmembrane transport	1.80E-02
85	GO:0006457: protein folding	1.84E-02
86	GO:0016311: dephosphorylation	1.99E-02
87	GO:0009817: defense response to fungus, incompatible interaction	2.06E-02
88	GO:0018298: protein-chromophore linkage	2.06E-02
89	GO:0000160: phosphorelay signal transduction system	2.14E-02
90	GO:0009834: plant-type secondary cell wall biogenesis	2.21E-02
91	GO:0009407: toxin catabolic process	2.21E-02
92	GO:0006869: lipid transport	2.84E-02
93	GO:0009926: auxin polar transport	2.92E-02
94	GO:0009744: response to sucrose	2.92E-02
95	GO:0009793: embryo development ending in seed dormancy	2.99E-02
96	GO:0009414: response to water deprivation	3.13E-02
97	GO:0009636: response to toxic substance	3.18E-02
98	GO:0071555: cell wall organization	3.23E-02
99	GO:0006979: response to oxidative stress	3.26E-02
100	GO:0009664: plant-type cell wall organization	3.44E-02
101	GO:0009736: cytokinin-activated signaling pathway	3.62E-02
102	GO:0006096: glycolytic process	4.07E-02
103	GO:0042545: cell wall modification	4.55E-02

Rank	GO Term	Adjusted P value
1	GO:0050614: delta24-sterol reductase activity	0.00E+00
2	GO:0008756: o-succinylbenzoate-CoA ligase activity	0.00E+00
3	GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity	0.00E+00
4	GO:0019843: rRNA binding	1.91E-18
5	GO:0003735: structural constituent of ribosome	5.82E-15
6	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	1.62E-06
7	GO:0004089: carbonate dehydratase activity	8.49E-06
8	GO:0051920: peroxiredoxin activity	5.10E-05
9	GO:0016762: xyloglucan:xyloglucosyl transferase activity	7.86E-05
10	GO:0016209: antioxidant activity	8.88E-05
11	GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity	1.33E-04
12	GO:0004071: aspartate-ammonia ligase activity	1.33E-04
13	GO:0015200: methylammonium transmembrane transporter activity	1.33E-04
14	GO:0016798: hydrolase activity, acting on glycosyl bonds	1.71E-04
15	GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity	3.07E-04
16	GO:0004066: asparagine synthase (glutamine-hydrolyzing) activity	3.07E-04
17	GO:0042389: omega-3 fatty acid desaturase activity	3.07E-04
18	GO:0005528: FK506 binding	4.74E-04
19	GO:0050734: hydroxycinnamoyltransferase activity	5.06E-04
20	GO:0030267: glyoxylate reductase (NADP) activity	5.06E-04
21	GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	5.06E-04
22	GO:0043495: protein anchor	9.59E-04
23	GO:0015204: urea transmembrane transporter activity	9.59E-04
24	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	1.01E-03
25	GO:0004040: amidase activity	1.21E-03
26	GO:0016208: AMP binding	1.49E-03
27	GO:0008200: ion channel inhibitor activity	1.49E-03
28	GO:0008519: ammonium transmembrane transporter activity	1.49E-03
29	GO:0015250: water channel activity	1.61E-03
30	GO:0033743: peptide-methionine (R)-S-oxide reductase activity	1.78E-03
31	GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity	1.78E-03
32	GO:0102483: scopolin beta-glucosidase activity	1.89E-03
33	GO:0019899: enzyme binding	2.09E-03
34	GO:0003993: acid phosphatase activity	2.76E-03
35	GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water	2.77E-03
36	GO:0008422: beta-glucosidase activity	2.88E-03
37	GO:0051537: 2 iron, 2 sulfur cluster binding	3.67E-03
38	GO:0008794: arsenate reductase (glutaredoxin) activity	4.30E-03
39	GO:0031072: heat shock protein binding	5.15E-03
40	GO:0004871: signal transducer activity	5.21E-03
41	GO:0022891: substrate-specific transmembrane transporter activity	9.08E-03
42	GO:0030570: pectate lyase activity	9.08E-03
43	GO:0019901: protein kinase binding	1.25E-02
44	GO:0004872: receptor activity	1.25E-02
45	GO:0042802: identical protein binding	1.43E-02
46	GO:0000156: phosphorelay response regulator activity	1.44E-02
47	GO:0016722: oxidoreductase activity, oxidizing metal ions	1.57E-02
48	GO:0004601: peroxidase activity	1.74E-02
49	GO:0016168: chlorophyll binding	1.78E-02
50	GO:0004222: metalloendopeptidase activity	2.21E-02
51	GO:0016614: oxidoreductase activity, acting on CH-OH group of donors	2.29E-02
52	GO:0052689: carboxylic ester hydrolase activity	2.39E-02
53	GO:0050661: NADP binding	2.68E-02
54	GO:0004364: glutathione transferase activity	2.84E-02
55	GO:0051287: NAD binding	3.35E-02
56	GO:0009055: electron carrier activity	3.42E-02
57	GO:0045330: aspartyl esterase activity	3.89E-02
58	GO:0004650: polygalacturonase activity	4.36E-02
59	GO:0008289: lipid binding	4.42E-02
60	GO:0030599: pectinesterase activity	4.45E-02
61	GO:0051082: unfolded protein binding	4.65E-02
62	GO:0015035: protein disulfide oxidoreductase activity	4.74E-02

Rank	GO Term	Adjusted P value
1	GO:0044391: ribosomal subunit	0.00E+00
2	GO:0009507: chloroplast	1.11E-22
3	GO:0009570: chloroplast stroma	3.05E-18
4	GO:0009941: chloroplast envelope	2.62E-16
5	GO:0005840: ribosome	5.67E-16
6	GO:0009579: thylakoid	1.98E-12
7	GO:0009535: chloroplast thylakoid membrane	3.51E-12
8	GO:0048046: apoplast	1.04E-11
9	GO:0031977: thylakoid lumen	4.80E-10
10	GO:0009543: chloroplast thylakoid lumen	5.10E-10
11	GO:0015934: large ribosomal subunit	1.36E-05
12	GO:0005618: cell wall	5.19E-05
13	GO:0010319: stromule	1.14E-04
14	GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex	1.33E-04
15	GO:0016020: membrane	1.61E-04
16	GO:0009505: plant-type cell wall	1.87E-04
17	GO:0042170: plastid membrane	3.07E-04
18	GO:0030095: chloroplast photosystem II	3.42E-04
19	GO:0009654: photosystem II oxygen evolving complex	5.22E-04
20	GO:0005576: extracellular region	7.33E-04
21	GO:0009534: chloroplast thylakoid	8.69E-04
22	GO:0019898: extrinsic component of membrane	1.06E-03
23	GO:0031225: anchored component of membrane	1.35E-03
24	GO:0042807: central vacuole	2.09E-03
25	GO:0022626: cytosolic ribosome	2.73E-03
26	GO:0000326: protein storage vacuole	2.77E-03
27	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	3.13E-03
28	GO:0008180: COP9 signalosome	3.13E-03
29	GO:0005763: mitochondrial small ribosomal subunit	3.13E-03
30	GO:0000311: plastid large ribosomal subunit	4.72E-03
31	GO:0005875: microtubule associated complex	6.53E-03
32	GO:0042651: thylakoid membrane	7.51E-03
33	GO:0015935: small ribosomal subunit	8.02E-03
34	GO:0005770: late endosome	1.13E-02
35	GO:0009523: photosystem II	1.25E-02
36	GO:0009506: plasmodesma	1.35E-02
37	GO:0046658: anchored component of plasma membrane	1.49E-02
38	GO:0005778: peroxisomal membrane	1.57E-02
39	GO:0019005: SCF ubiquitin ligase complex	2.06E-02
40	GO:0022625: cytosolic large ribosomal subunit	2.27E-02
41	GO:0000502: proteasome complex	3.62E-02
42	GO:0005773: vacuole	3.78E-02
43	GO:0005887: integral component of plasma membrane	4.32E-02
44	GO:0009706: chloroplast inner membrane	4.65E-02