Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT1G72180

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0033494: ferulate metabolic process0.00E+00
2GO:0090470: shoot organ boundary specification0.00E+00
3GO:0000481: maturation of 5S rRNA5.94E-05
4GO:0080051: cutin transport5.94E-05
5GO:0033481: galacturonate biosynthetic process5.94E-05
6GO:0034337: RNA folding5.94E-05
7GO:0005991: trehalose metabolic process5.94E-05
8GO:0071588: hydrogen peroxide mediated signaling pathway5.94E-05
9GO:0009773: photosynthetic electron transport in photosystem I7.05E-05
10GO:0010143: cutin biosynthetic process1.10E-04
11GO:0015908: fatty acid transport1.44E-04
12GO:0043255: regulation of carbohydrate biosynthetic process1.44E-04
13GO:0010115: regulation of abscisic acid biosynthetic process1.44E-04
14GO:1900033: negative regulation of trichome patterning1.44E-04
15GO:0001736: establishment of planar polarity1.44E-04
16GO:0090391: granum assembly2.46E-04
17GO:0006518: peptide metabolic process2.46E-04
18GO:0042335: cuticle development3.00E-04
19GO:0010182: sugar mediated signaling pathway3.24E-04
20GO:1901332: negative regulation of lateral root development3.57E-04
21GO:0010371: regulation of gibberellin biosynthetic process3.57E-04
22GO:0009152: purine ribonucleotide biosynthetic process3.57E-04
23GO:0046653: tetrahydrofolate metabolic process3.57E-04
24GO:0006546: glycine catabolic process4.78E-04
25GO:0010222: stem vascular tissue pattern formation4.78E-04
26GO:0048629: trichome patterning4.78E-04
27GO:0045727: positive regulation of translation4.78E-04
28GO:0015994: chlorophyll metabolic process4.78E-04
29GO:0010027: thylakoid membrane organization5.73E-04
30GO:0006564: L-serine biosynthetic process6.05E-04
31GO:0006461: protein complex assembly6.05E-04
32GO:0009107: lipoate biosynthetic process6.05E-04
33GO:0009913: epidermal cell differentiation7.40E-04
34GO:0010337: regulation of salicylic acid metabolic process7.40E-04
35GO:0006561: proline biosynthetic process7.40E-04
36GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway7.40E-04
37GO:0010311: lateral root formation7.76E-04
38GO:0010019: chloroplast-nucleus signaling pathway8.82E-04
39GO:0050829: defense response to Gram-negative bacterium1.03E-03
40GO:0009395: phospholipid catabolic process1.03E-03
41GO:0010196: nonphotochemical quenching1.03E-03
42GO:0070413: trehalose metabolism in response to stress1.18E-03
43GO:0030091: protein repair1.18E-03
44GO:0006605: protein targeting1.18E-03
45GO:0032508: DNA duplex unwinding1.18E-03
46GO:0008610: lipid biosynthetic process1.18E-03
47GO:0009657: plastid organization1.35E-03
48GO:0032544: plastid translation1.35E-03
49GO:0000373: Group II intron splicing1.52E-03
50GO:0006364: rRNA processing1.57E-03
51GO:0010205: photoinhibition1.69E-03
52GO:0006032: chitin catabolic process1.88E-03
53GO:0009688: abscisic acid biosynthetic process1.88E-03
54GO:0048829: root cap development1.88E-03
55GO:0008285: negative regulation of cell proliferation2.07E-03
56GO:0009750: response to fructose2.07E-03
57GO:0048765: root hair cell differentiation2.07E-03
58GO:0000038: very long-chain fatty acid metabolic process2.07E-03
59GO:0016024: CDP-diacylglycerol biosynthetic process2.27E-03
60GO:0010628: positive regulation of gene expression2.47E-03
61GO:0009718: anthocyanin-containing compound biosynthetic process2.47E-03
62GO:0010588: cotyledon vascular tissue pattern formation2.47E-03
63GO:0071732: cellular response to nitric oxide2.89E-03
64GO:0010053: root epidermal cell differentiation2.89E-03
65GO:0009225: nucleotide-sugar metabolic process2.89E-03
66GO:0009825: multidimensional cell growth2.89E-03
67GO:0010167: response to nitrate2.89E-03
68GO:0009735: response to cytokinin2.98E-03
69GO:0006636: unsaturated fatty acid biosynthetic process3.11E-03
70GO:0019762: glucosinolate catabolic process3.11E-03
71GO:0009416: response to light stimulus3.33E-03
72GO:0080147: root hair cell development3.34E-03
73GO:0005992: trehalose biosynthetic process3.34E-03
74GO:0006633: fatty acid biosynthetic process3.46E-03
75GO:0007017: microtubule-based process3.57E-03
76GO:0009768: photosynthesis, light harvesting in photosystem I3.57E-03
77GO:0010073: meristem maintenance3.57E-03
78GO:0003333: amino acid transmembrane transport3.81E-03
79GO:0016998: cell wall macromolecule catabolic process3.81E-03
80GO:0009269: response to desiccation3.81E-03
81GO:0009451: RNA modification3.89E-03
82GO:0071369: cellular response to ethylene stimulus4.30E-03
83GO:0010227: floral organ abscission4.30E-03
84GO:0009306: protein secretion4.55E-03
85GO:0009958: positive gravitropism5.34E-03
86GO:0048544: recognition of pollen5.61E-03
87GO:0000302: response to reactive oxygen species6.17E-03
88GO:0071281: cellular response to iron ion6.75E-03
89GO:0015979: photosynthesis8.29E-03
90GO:0015995: chlorophyll biosynthetic process8.92E-03
91GO:0030244: cellulose biosynthetic process9.59E-03
92GO:0018298: protein-chromophore linkage9.59E-03
93GO:0009832: plant-type cell wall biogenesis9.93E-03
94GO:0009651: response to salt stress1.01E-02
95GO:0010218: response to far red light1.03E-02
96GO:0009631: cold acclimation1.06E-02
97GO:0009408: response to heat1.07E-02
98GO:0006865: amino acid transport1.10E-02
99GO:0009637: response to blue light1.13E-02
100GO:0009853: photorespiration1.13E-02
101GO:0034599: cellular response to oxidative stress1.17E-02
102GO:0009409: response to cold1.20E-02
103GO:0009640: photomorphogenesis1.35E-02
104GO:0010114: response to red light1.35E-02
105GO:0009926: auxin polar transport1.35E-02
106GO:0006855: drug transmembrane transport1.51E-02
107GO:0009734: auxin-activated signaling pathway1.52E-02
108GO:0009809: lignin biosynthetic process1.67E-02
109GO:0009737: response to abscisic acid2.13E-02
110GO:0009624: response to nematode2.15E-02
111GO:0045893: positive regulation of transcription, DNA-templated2.20E-02
112GO:0009793: embryo development ending in seed dormancy2.36E-02
113GO:0009058: biosynthetic process2.62E-02
114GO:0042744: hydrogen peroxide catabolic process2.77E-02
115GO:0009790: embryo development2.81E-02
116GO:0010150: leaf senescence3.17E-02
117GO:0010228: vegetative to reproductive phase transition of meristem3.28E-02
118GO:0009414: response to water deprivation3.77E-02
119GO:0009733: response to auxin4.33E-02
120GO:0042254: ribosome biogenesis4.38E-02
121GO:0009723: response to ethylene4.80E-02
RankGO TermAdjusted P value
1GO:0050518: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity0.00E+00
2GO:0010301: xanthoxin dehydrogenase activity0.00E+00
3GO:0045485: omega-6 fatty acid desaturase activity5.94E-05
4GO:0015245: fatty acid transporter activity5.94E-05
5GO:0047746: chlorophyllase activity1.44E-04
6GO:0004617: phosphoglycerate dehydrogenase activity1.44E-04
7GO:0016742: hydroxymethyl-, formyl- and related transferase activity2.46E-04
8GO:0008864: formyltetrahydrofolate deformylase activity2.46E-04
9GO:0050734: hydroxycinnamoyltransferase activity2.46E-04
10GO:0016992: lipoate synthase activity2.46E-04
11GO:0003825: alpha,alpha-trehalose-phosphate synthase (UDP-forming) activity3.57E-04
12GO:0050378: UDP-glucuronate 4-epimerase activity4.78E-04
13GO:0010011: auxin binding4.78E-04
14GO:0010328: auxin influx transmembrane transporter activity4.78E-04
15GO:0016791: phosphatase activity4.83E-04
16GO:0016597: amino acid binding5.42E-04
17GO:0004130: cytochrome-c peroxidase activity7.40E-04
18GO:0004366: glycerol-3-phosphate O-acyltransferase activity7.40E-04
19GO:0016688: L-ascorbate peroxidase activity7.40E-04
20GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity7.40E-04
21GO:0016788: hydrolase activity, acting on ester bonds7.85E-04
22GO:0033743: peptide-methionine (R)-S-oxide reductase activity8.82E-04
23GO:0043022: ribosome binding1.18E-03
24GO:0030234: enzyme regulator activity1.88E-03
25GO:0004568: chitinase activity1.88E-03
26GO:0016746: transferase activity, transferring acyl groups2.28E-03
27GO:0004022: alcohol dehydrogenase (NAD) activity2.47E-03
28GO:0004565: beta-galactosidase activity2.47E-03
29GO:0008266: poly(U) RNA binding2.68E-03
30GO:0102337: 3-oxo-cerotoyl-CoA synthase activity3.11E-03
31GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity3.11E-03
32GO:0031409: pigment binding3.11E-03
33GO:0102336: 3-oxo-arachidoyl-CoA synthase activity3.11E-03
34GO:0005528: FK506 binding3.34E-03
35GO:0042626: ATPase activity, coupled to transmembrane movement of substances4.82E-03
36GO:0030246: carbohydrate binding4.85E-03
37GO:0050662: coenzyme binding5.61E-03
38GO:0005200: structural constituent of cytoskeleton7.35E-03
39GO:0016168: chlorophyll binding8.28E-03
40GO:0030247: polysaccharide binding8.92E-03
41GO:0003824: catalytic activity9.17E-03
42GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity9.59E-03
43GO:0004222: metalloendopeptidase activity1.03E-02
44GO:0003723: RNA binding1.13E-02
45GO:0004519: endonuclease activity1.17E-02
46GO:0003993: acid phosphatase activity1.17E-02
47GO:0015293: symporter activity1.47E-02
48GO:0003755: peptidyl-prolyl cis-trans isomerase activity1.51E-02
49GO:0051287: NAD binding1.55E-02
50GO:0015171: amino acid transmembrane transporter activity1.80E-02
51GO:0045735: nutrient reservoir activity1.88E-02
52GO:0019843: rRNA binding2.52E-02
53GO:0008168: methyltransferase activity4.21E-02
RankGO TermAdjusted P value
1GO:0009507: chloroplast2.68E-08
2GO:0009534: chloroplast thylakoid3.27E-08
3GO:0009535: chloroplast thylakoid membrane5.09E-06
4GO:0009515: granal stacked thylakoid5.94E-05
5GO:0009941: chloroplast envelope6.08E-05
6GO:0009570: chloroplast stroma1.62E-04
7GO:0009897: external side of plasma membrane2.46E-04
8GO:0015630: microtubule cytoskeleton3.57E-04
9GO:0048046: apoplast7.50E-04
10GO:0009986: cell surface1.03E-03
11GO:0009533: chloroplast stromal thylakoid1.03E-03
12GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)1.52E-03
13GO:0032040: small-subunit processome2.27E-03
14GO:0010287: plastoglobule2.62E-03
15GO:0030095: chloroplast photosystem II2.68E-03
16GO:0009543: chloroplast thylakoid lumen2.77E-03
17GO:0030076: light-harvesting complex2.89E-03
18GO:0009579: thylakoid4.18E-03
19GO:0009522: photosystem I5.61E-03
20GO:0009523: photosystem II5.89E-03
21GO:0032580: Golgi cisterna membrane7.05E-03
22GO:0005768: endosome7.13E-03
23GO:0030529: intracellular ribonucleoprotein complex7.97E-03
24GO:0043231: intracellular membrane-bounded organelle1.18E-02
25GO:0031977: thylakoid lumen1.28E-02
26GO:0005618: cell wall1.30E-02
27GO:0016021: integral component of membrane2.11E-02
28GO:0009706: chloroplast inner membrane2.15E-02
29GO:0005759: mitochondrial matrix2.97E-02
30GO:0005802: trans-Golgi network3.06E-02
31GO:0005794: Golgi apparatus4.56E-02
32GO:0005874: microtubule4.92E-02
Gene type



Gene DE type