co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G71980

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0009877: nodulation	0.00E+00
2	GO:0043171: peptide catabolic process	0.00E+00
3	GO:0010378: temperature compensation of the circadian clock	0.00E+00
4	GO:0042906: xanthine transport	0.00E+00
5	GO:0030644: cellular chloride ion homeostasis	0.00E+00
6	GO:0005997: xylulose metabolic process	0.00E+00
7	GO:1903428: positive regulation of reactive oxygen species biosynthetic process	0.00E+00
8	GO:0009768: photosynthesis, light harvesting in photosystem I	7.38E-13
9	GO:0018298: protein-chromophore linkage	2.39E-10
10	GO:0009645: response to low light intensity stimulus	5.69E-09
11	GO:0009409: response to cold	1.72E-08
12	GO:0009644: response to high light intensity	7.99E-08
13	GO:0010218: response to far red light	6.95E-07
14	GO:0009769: photosynthesis, light harvesting in photosystem II	1.04E-06
15	GO:0015979: photosynthesis	1.96E-06
16	GO:0010600: regulation of auxin biosynthetic process	1.97E-05
17	GO:0009416: response to light stimulus	2.79E-05
18	GO:0010114: response to red light	4.36E-05
19	GO:0010244: response to low fluence blue light stimulus by blue low-fluence system	6.70E-05
20	GO:0010928: regulation of auxin mediated signaling pathway	1.15E-04
21	GO:0015812: gamma-aminobutyric acid transport	1.58E-04
22	GO:0032958: inositol phosphate biosynthetic process	1.58E-04
23	GO:0006355: regulation of transcription, DNA-templated	1.58E-04
24	GO:1900060: negative regulation of ceramide biosynthetic process	1.58E-04
25	GO:0010286: heat acclimation	1.60E-04
26	GO:0080167: response to karrikin	1.60E-04
27	GO:0009970: cellular response to sulfate starvation	2.50E-04
28	GO:0009737: response to abscisic acid	3.07E-04
29	GO:0016925: protein sumoylation	3.35E-04
30	GO:0048255: mRNA stabilization	3.60E-04
31	GO:0051170: nuclear import	3.60E-04
32	GO:0015857: uracil transport	3.60E-04
33	GO:1902884: positive regulation of response to oxidative stress	3.60E-04
34	GO:0090156: cellular sphingolipid homeostasis	3.60E-04
35	GO:0015720: allantoin transport	3.60E-04
36	GO:0006883: cellular sodium ion homeostasis	3.60E-04
37	GO:0007623: circadian rhythm	3.61E-04
38	GO:0009637: response to blue light	3.73E-04
39	GO:0042542: response to hydrogen peroxide	4.91E-04
40	GO:0006598: polyamine catabolic process	5.89E-04
41	GO:0071705: nitrogen compound transport	5.89E-04
42	GO:1901562: response to paraquat	5.89E-04
43	GO:0051176: positive regulation of sulfur metabolic process	5.89E-04
44	GO:1902448: positive regulation of shade avoidance	5.89E-04
45	GO:0048511: rhythmic process	7.18E-04
46	GO:0009585: red, far-red light phototransduction	7.52E-04
47	GO:0010017: red or far-red light signaling pathway	7.84E-04
48	GO:0006970: response to osmotic stress	7.91E-04
49	GO:0009414: response to water deprivation	7.98E-04
50	GO:0015749: monosaccharide transport	8.43E-04
51	GO:1901332: negative regulation of lateral root development	8.43E-04
52	GO:0006020: inositol metabolic process	8.43E-04
53	GO:0010601: positive regulation of auxin biosynthetic process	8.43E-04
54	GO:0035556: intracellular signal transduction	1.04E-03
55	GO:1901002: positive regulation of response to salt stress	1.12E-03
56	GO:0030104: water homeostasis	1.12E-03
57	GO:0042594: response to starvation	1.12E-03
58	GO:0009687: abscisic acid metabolic process	1.12E-03
59	GO:0009765: photosynthesis, light harvesting	1.12E-03
60	GO:0048578: positive regulation of long-day photoperiodism, flowering	1.41E-03
61	GO:0000741: karyogamy	1.74E-03
62	GO:0009635: response to herbicide	1.74E-03
63	GO:0009861: jasmonic acid and ethylene-dependent systemic resistance	2.09E-03
64	GO:0000079: regulation of cyclin-dependent protein serine/threonine kinase activity	2.09E-03
65	GO:0048437: floral organ development	2.45E-03
66	GO:0010196: nonphotochemical quenching	2.45E-03
67	GO:0010038: response to metal ion	2.45E-03
68	GO:0010161: red light signaling pathway	2.45E-03
69	GO:0009817: defense response to fungus, incompatible interaction	2.64E-03
70	GO:0000160: phosphorelay signal transduction system	2.77E-03
71	GO:0042255: ribosome assembly	2.84E-03
72	GO:0009415: response to water	2.84E-03
73	GO:0010078: maintenance of root meristem identity	2.84E-03
74	GO:0009704: de-etiolation	2.84E-03
75	GO:0009651: response to salt stress	2.96E-03
76	GO:0009631: cold acclimation	3.04E-03
77	GO:0009827: plant-type cell wall modification	3.25E-03
78	GO:0010099: regulation of photomorphogenesis	3.25E-03
79	GO:0007165: signal transduction	3.55E-03
80	GO:0034765: regulation of ion transmembrane transport	3.67E-03
81	GO:0090333: regulation of stomatal closure	3.67E-03
82	GO:0046916: cellular transition metal ion homeostasis	3.67E-03
83	GO:0048354: mucilage biosynthetic process involved in seed coat development	4.12E-03
84	GO:0009640: photomorphogenesis	4.29E-03
85	GO:0010162: seed dormancy process	4.58E-03
86	GO:0006995: cellular response to nitrogen starvation	4.58E-03
87	GO:0055062: phosphate ion homeostasis	4.58E-03
88	GO:0006535: cysteine biosynthetic process from serine	4.58E-03
89	GO:0009688: abscisic acid biosynthetic process	4.58E-03
90	GO:0009641: shade avoidance	4.58E-03
91	GO:0008643: carbohydrate transport	4.64E-03
92	GO:0030148: sphingolipid biosynthetic process	5.05E-03
93	GO:0000165: MAPK cascade	5.19E-03
94	GO:0006351: transcription, DNA-templated	5.94E-03
95	GO:0050826: response to freezing	6.06E-03
96	GO:0009718: anthocyanin-containing compound biosynthetic process	6.06E-03
97	GO:0010207: photosystem II assembly	6.59E-03
98	GO:0009266: response to temperature stimulus	6.59E-03
99	GO:0019853: L-ascorbic acid biosynthetic process	7.13E-03
100	GO:0090351: seedling development	7.13E-03
101	GO:0034976: response to endoplasmic reticulum stress	7.69E-03
102	GO:0019344: cysteine biosynthetic process	8.27E-03
103	GO:0009408: response to heat	8.66E-03
104	GO:0016575: histone deacetylation	8.86E-03
105	GO:0009269: response to desiccation	9.46E-03
106	GO:0003333: amino acid transmembrane transport	9.46E-03
107	GO:0010431: seed maturation	9.46E-03
108	GO:0009693: ethylene biosynthetic process	1.07E-02
109	GO:0071215: cellular response to abscisic acid stimulus	1.07E-02
110	GO:0006012: galactose metabolic process	1.07E-02
111	GO:0045492: xylan biosynthetic process	1.14E-02
112	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	1.20E-02
113	GO:0006979: response to oxidative stress	1.24E-02
114	GO:0080022: primary root development	1.27E-02
115	GO:0010197: polar nucleus fusion	1.34E-02
116	GO:0046323: glucose import	1.34E-02
117	GO:0006814: sodium ion transport	1.41E-02
118	GO:0042752: regulation of circadian rhythm	1.41E-02
119	GO:0009556: microsporogenesis	1.48E-02
120	GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process	1.59E-02
121	GO:0009739: response to gibberellin	1.59E-02
122	GO:0009735: response to cytokinin	1.60E-02
123	GO:0032502: developmental process	1.63E-02
124	GO:0010468: regulation of gene expression	1.70E-02
125	GO:1901657: glycosyl compound metabolic process	1.71E-02
126	GO:0009738: abscisic acid-activated signaling pathway	1.72E-02
127	GO:0006914: autophagy	1.78E-02
128	GO:0010029: regulation of seed germination	2.10E-02
129	GO:0009788: negative regulation of abscisic acid-activated signaling pathway	2.10E-02
130	GO:0009658: chloroplast organization	2.21E-02
131	GO:0015995: chlorophyll biosynthetic process	2.27E-02
132	GO:0048573: photoperiodism, flowering	2.27E-02
133	GO:0006950: response to stress	2.27E-02
134	GO:0048481: plant ovule development	2.44E-02
135	GO:0010119: regulation of stomatal movement	2.71E-02
136	GO:0010200: response to chitin	2.83E-02
137	GO:0016192: vesicle-mediated transport	2.88E-02
138	GO:0016051: carbohydrate biosynthetic process	2.89E-02
139	GO:0030001: metal ion transport	3.17E-02
140	GO:0045892: negative regulation of transcription, DNA-templated	3.33E-02
141	GO:0009926: auxin polar transport	3.46E-02
142	GO:0051707: response to other organism	3.46E-02
143	GO:0006629: lipid metabolic process	4.03E-02
144	GO:0042538: hyperosmotic salinity response	4.07E-02
145	GO:0006813: potassium ion transport	4.28E-02
146	GO:0051603: proteolysis involved in cellular protein catabolic process	4.38E-02
147	GO:0009909: regulation of flower development	4.60E-02

Rank	GO Term	Adjusted P value
1	GO:0004567: beta-mannosidase activity	0.00E+00
2	GO:0080082: esculin beta-glucosidase activity	0.00E+00
3	GO:0005358: high-affinity hydrogen:glucose symporter activity	0.00E+00
4	GO:0080081: 4-methylumbelliferyl-beta-D-glucopyranoside beta-glucosidase activity	0.00E+00
5	GO:0047668: amygdalin beta-glucosidase activity	0.00E+00
6	GO:0019912: cyclin-dependent protein kinase activating kinase activity	0.00E+00
7	GO:0080083: beta-gentiobiose beta-glucosidase activity	0.00E+00
8	GO:0030504: inorganic diphosphate transmembrane transporter activity	0.00E+00
9	GO:0042907: xanthine transmembrane transporter activity	0.00E+00
10	GO:0010349: L-galactose dehydrogenase activity	0.00E+00
11	GO:0031409: pigment binding	3.10E-13
12	GO:0016168: chlorophyll binding	1.06E-10
13	GO:0005515: protein binding	1.91E-05
14	GO:0046870: cadmium ion binding	1.58E-04
15	GO:0000828: inositol hexakisphosphate kinase activity	1.58E-04
16	GO:0004856: xylulokinase activity	1.58E-04
17	GO:0070006: metalloaminopeptidase activity	1.58E-04
18	GO:0015185: gamma-aminobutyric acid transmembrane transporter activity	1.58E-04
19	GO:0005244: voltage-gated ion channel activity	1.58E-04
20	GO:0033857: diphosphoinositol-pentakisphosphate kinase activity	1.58E-04
21	GO:0009679: hexose:proton symporter activity	1.58E-04
22	GO:0000829: inositol heptakisphosphate kinase activity	1.58E-04
23	GO:0010013: N-1-naphthylphthalamic acid binding	1.58E-04
24	GO:0080079: cellobiose glucosidase activity	1.58E-04
25	GO:0017091: AU-rich element binding	1.58E-04
26	GO:0015180: L-alanine transmembrane transporter activity	3.60E-04
27	GO:0032791: lead ion binding	3.60E-04
28	GO:0005274: allantoin uptake transmembrane transporter activity	3.60E-04
29	GO:0047216: inositol 3-alpha-galactosyltransferase activity	3.60E-04
30	GO:0046872: metal ion binding	5.80E-04
31	GO:0017150: tRNA dihydrouridine synthase activity	5.89E-04
32	GO:0004096: catalase activity	5.89E-04
33	GO:0046592: polyamine oxidase activity	5.89E-04
34	GO:0019948: SUMO activating enzyme activity	5.89E-04
35	GO:0004707: MAP kinase activity	7.18E-04
36	GO:0015181: arginine transmembrane transporter activity	8.43E-04
37	GO:0019789: SUMO transferase activity	8.43E-04
38	GO:0009001: serine O-acetyltransferase activity	8.43E-04
39	GO:0015189: L-lysine transmembrane transporter activity	8.43E-04
40	GO:0015210: uracil transmembrane transporter activity	1.12E-03
41	GO:0005313: L-glutamate transmembrane transporter activity	1.12E-03
42	GO:0005253: anion channel activity	1.12E-03
43	GO:0042277: peptide binding	1.12E-03
44	GO:0015145: monosaccharide transmembrane transporter activity	1.41E-03
45	GO:0016773: phosphotransferase activity, alcohol group as acceptor	1.41E-03
46	GO:0016702: oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen	1.41E-03
47	GO:0000156: phosphorelay response regulator activity	1.61E-03
48	GO:0004629: phospholipase C activity	1.74E-03
49	GO:0005247: voltage-gated chloride channel activity	1.74E-03
50	GO:0070300: phosphatidic acid binding	2.09E-03
51	GO:0004435: phosphatidylinositol phospholipase C activity	2.09E-03
52	GO:0005351: sugar:proton symporter activity	2.24E-03
53	GO:0003700: transcription factor activity, sequence-specific DNA binding	2.60E-03
54	GO:0004033: aldo-keto reductase (NADP) activity	2.84E-03
55	GO:0004525: ribonuclease III activity	2.84E-03
56	GO:0032041: NAD-dependent histone deacetylase activity (H3-K14 specific)	3.25E-03
57	GO:0008353: RNA polymerase II carboxy-terminal domain kinase activity	3.25E-03
58	GO:0005267: potassium channel activity	3.25E-03
59	GO:0000989: transcription factor activity, transcription factor binding	3.67E-03
60	GO:0009815: 1-aminocyclopropane-1-carboxylate oxidase activity	3.67E-03
61	GO:0008270: zinc ion binding	4.54E-03
62	GO:0004177: aminopeptidase activity	5.05E-03
63	GO:0047372: acylglycerol lipase activity	5.05E-03
64	GO:0004565: beta-galactosidase activity	6.06E-03
65	GO:0008081: phosphoric diester hydrolase activity	6.06E-03
66	GO:0005315: inorganic phosphate transmembrane transporter activity	6.06E-03
67	GO:0008131: primary amine oxidase activity	6.59E-03
68	GO:0003712: transcription cofactor activity	7.13E-03
69	GO:0004407: histone deacetylase activity	8.27E-03
70	GO:0003677: DNA binding	9.25E-03
71	GO:0019706: protein-cysteine S-palmitoyltransferase activity	9.46E-03
72	GO:0003727: single-stranded RNA binding	1.14E-02
73	GO:0008514: organic anion transmembrane transporter activity	1.14E-02
74	GO:0015144: carbohydrate transmembrane transporter activity	1.23E-02
75	GO:0015297: antiporter activity	1.36E-02
76	GO:0102483: scopolin beta-glucosidase activity	2.27E-02
77	GO:0004693: cyclin-dependent protein serine/threonine kinase activity	2.62E-02
78	GO:0050897: cobalt ion binding	2.71E-02
79	GO:0061630: ubiquitin protein ligase activity	2.88E-02
80	GO:0008422: beta-glucosidase activity	3.08E-02
81	GO:0035091: phosphatidylinositol binding	3.66E-02
82	GO:0005198: structural molecule activity	3.76E-02
83	GO:0015293: symporter activity	3.76E-02
84	GO:0016301: kinase activity	3.90E-02
85	GO:0044212: transcription regulatory region DNA binding	4.32E-02
86	GO:0015171: amino acid transmembrane transporter activity	4.60E-02
87	GO:0045735: nutrient reservoir activity	4.82E-02

Rank	GO Term	Adjusted P value
1	GO:0030076: light-harvesting complex	1.93E-13
2	GO:0009522: photosystem I	1.14E-11
3	GO:0010287: plastoglobule	1.08E-09
4	GO:0009523: photosystem II	3.59E-06
5	GO:0009579: thylakoid	5.56E-06
6	GO:0009517: PSII associated light-harvesting complex II	1.97E-05
7	GO:0042651: thylakoid membrane	3.19E-05
8	GO:0009534: chloroplast thylakoid	4.85E-05
9	GO:0009941: chloroplast envelope	5.34E-05
10	GO:0009535: chloroplast thylakoid membrane	8.17E-05
11	GO:0009783: photosystem II antenna complex	1.58E-04
12	GO:0035339: SPOTS complex	1.58E-04
13	GO:0016021: integral component of membrane	8.76E-04
14	GO:0009898: cytoplasmic side of plasma membrane	1.12E-03
15	GO:0034707: chloride channel complex	1.74E-03
16	GO:0016020: membrane	2.38E-03
17	GO:0009533: chloroplast stromal thylakoid	2.45E-03
18	GO:0034045: pre-autophagosomal structure membrane	3.25E-03
19	GO:0031090: organelle membrane	3.67E-03
20	GO:0010494: cytoplasmic stress granule	3.67E-03
21	GO:0005773: vacuole	7.97E-03
22	GO:0031965: nuclear membrane	1.48E-02
23	GO:0005634: nucleus	1.49E-02
24	GO:0009507: chloroplast	1.85E-02
25	GO:0000932: P-body	2.02E-02
26	GO:0005777: peroxisome	2.14E-02
27	GO:0005774: vacuolar membrane	2.77E-02
28	GO:0005618: cell wall	3.47E-02
29	GO:0005622: intracellular	3.68E-02
30	GO:0031966: mitochondrial membrane	4.07E-02
31	GO:0016607: nuclear speck	4.93E-02