co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G71695

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0042493: response to drug	0.00E+00
2	GO:0061635: regulation of protein complex stability	0.00E+00
3	GO:0046838: phosphorylated carbohydrate dephosphorylation	0.00E+00
4	GO:1905499: trichome papilla formation	0.00E+00
5	GO:0042821: pyridoxal biosynthetic process	0.00E+00
6	GO:0042820: vitamin B6 catabolic process	0.00E+00
7	GO:0015979: photosynthesis	1.70E-10
8	GO:0009773: photosynthetic electron transport in photosystem I	1.18E-08
9	GO:0042335: cuticle development	6.06E-07
10	GO:0009735: response to cytokinin	1.27E-06
11	GO:0010196: nonphotochemical quenching	6.10E-06
12	GO:0090391: granum assembly	1.64E-05
13	GO:0010025: wax biosynthetic process	1.07E-04
14	GO:1904964: positive regulation of phytol biosynthetic process	3.19E-04
15	GO:0042759: long-chain fatty acid biosynthetic process	3.19E-04
16	GO:0080051: cutin transport	3.19E-04
17	GO:0043686: co-translational protein modification	3.19E-04
18	GO:0009443: pyridoxal 5'-phosphate salvage	3.19E-04
19	GO:0005991: trehalose metabolic process	3.19E-04
20	GO:0071596: ubiquitin-dependent protein catabolic process via the N-end rule pathway	3.19E-04
21	GO:0071588: hydrogen peroxide mediated signaling pathway	3.19E-04
22	GO:0010729: positive regulation of hydrogen peroxide biosynthetic process	3.19E-04
23	GO:1904966: positive regulation of vitamin E biosynthetic process	3.19E-04
24	GO:0048564: photosystem I assembly	3.32E-04
25	GO:0006869: lipid transport	3.88E-04
26	GO:0000373: Group II intron splicing	4.90E-04
27	GO:1902326: positive regulation of chlorophyll biosynthetic process	6.97E-04
28	GO:0015908: fatty acid transport	6.97E-04
29	GO:0030388: fructose 1,6-bisphosphate metabolic process	6.97E-04
30	GO:0043255: regulation of carbohydrate biosynthetic process	6.97E-04
31	GO:0010024: phytochromobilin biosynthetic process	6.97E-04
32	GO:0010115: regulation of abscisic acid biosynthetic process	6.97E-04
33	GO:0010027: thylakoid membrane organization	7.02E-04
34	GO:0015995: chlorophyll biosynthetic process	8.61E-04
35	GO:0016024: CDP-diacylglycerol biosynthetic process	8.89E-04
36	GO:0018298: protein-chromophore linkage	9.78E-04
37	GO:0006000: fructose metabolic process	1.13E-03
38	GO:0006788: heme oxidation	1.13E-03
39	GO:0015714: phosphoenolpyruvate transport	1.13E-03
40	GO:0019253: reductive pentose-phosphate cycle	1.13E-03
41	GO:0010207: photosystem II assembly	1.13E-03
42	GO:0009062: fatty acid catabolic process	1.13E-03
43	GO:0010167: response to nitrate	1.26E-03
44	GO:0009650: UV protection	1.62E-03
45	GO:0071484: cellular response to light intensity	1.62E-03
46	GO:0009152: purine ribonucleotide biosynthetic process	1.62E-03
47	GO:0046653: tetrahydrofolate metabolic process	1.62E-03
48	GO:1901332: negative regulation of lateral root development	1.62E-03
49	GO:0016998: cell wall macromolecule catabolic process	1.89E-03
50	GO:0016042: lipid catabolic process	1.94E-03
51	GO:0045727: positive regulation of translation	2.18E-03
52	GO:0015994: chlorophyll metabolic process	2.18E-03
53	GO:0010222: stem vascular tissue pattern formation	2.18E-03
54	GO:0015713: phosphoglycerate transport	2.18E-03
55	GO:0006564: L-serine biosynthetic process	2.78E-03
56	GO:0010236: plastoquinone biosynthetic process	2.78E-03
57	GO:0031365: N-terminal protein amino acid modification	2.78E-03
58	GO:0006461: protein complex assembly	2.78E-03
59	GO:0080110: sporopollenin biosynthetic process	2.78E-03
60	GO:0006665: sphingolipid metabolic process	2.78E-03
61	GO:0010182: sugar mediated signaling pathway	3.08E-03
62	GO:0042254: ribosome biogenesis	3.35E-03
63	GO:0006561: proline biosynthetic process	3.43E-03
64	GO:0009913: epidermal cell differentiation	3.43E-03
65	GO:0006655: phosphatidylglycerol biosynthetic process	3.43E-03
66	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	3.43E-03
67	GO:0010337: regulation of salicylic acid metabolic process	3.43E-03
68	GO:0010189: vitamin E biosynthetic process	4.13E-03
69	GO:0010019: chloroplast-nucleus signaling pathway	4.13E-03
70	GO:0080167: response to karrikin	4.52E-03
71	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	4.76E-03
72	GO:0006400: tRNA modification	4.87E-03
73	GO:0009395: phospholipid catabolic process	4.87E-03
74	GO:0009772: photosynthetic electron transport in photosystem II	4.87E-03
75	GO:1900057: positive regulation of leaf senescence	4.87E-03
76	GO:0010444: guard mother cell differentiation	4.87E-03
77	GO:0006605: protein targeting	5.66E-03
78	GO:0008610: lipid biosynthetic process	5.66E-03
79	GO:0031540: regulation of anthocyanin biosynthetic process	5.66E-03
80	GO:0055075: potassium ion homeostasis	5.66E-03
81	GO:0070413: trehalose metabolism in response to stress	5.66E-03
82	GO:0045292: mRNA cis splicing, via spliceosome	5.66E-03
83	GO:0032544: plastid translation	6.49E-03
84	GO:0009657: plastid organization	6.49E-03
85	GO:0006002: fructose 6-phosphate metabolic process	6.49E-03
86	GO:0090305: nucleic acid phosphodiester bond hydrolysis	7.36E-03
87	GO:0010206: photosystem II repair	7.36E-03
88	GO:0034765: regulation of ion transmembrane transport	7.36E-03
89	GO:0042761: very long-chain fatty acid biosynthetic process	8.27E-03
90	GO:0009688: abscisic acid biosynthetic process	9.22E-03
91	GO:0006032: chitin catabolic process	9.22E-03
92	GO:0034599: cellular response to oxidative stress	9.54E-03
93	GO:0009750: response to fructose	1.02E-02
94	GO:0018119: peptidyl-cysteine S-nitrosylation	1.02E-02
95	GO:0043085: positive regulation of catalytic activity	1.02E-02
96	GO:0000038: very long-chain fatty acid metabolic process	1.02E-02
97	GO:0005983: starch catabolic process	1.12E-02
98	GO:0015706: nitrate transport	1.12E-02
99	GO:0010588: cotyledon vascular tissue pattern formation	1.23E-02
100	GO:0006006: glucose metabolic process	1.23E-02
101	GO:0010229: inflorescence development	1.23E-02
102	GO:0006094: gluconeogenesis	1.23E-02
103	GO:0005986: sucrose biosynthetic process	1.23E-02
104	GO:0010628: positive regulation of gene expression	1.23E-02
105	GO:0010143: cutin biosynthetic process	1.34E-02
106	GO:0048467: gynoecium development	1.34E-02
107	GO:0071732: cellular response to nitric oxide	1.45E-02
108	GO:0009825: multidimensional cell growth	1.45E-02
109	GO:0009658: chloroplast organization	1.45E-02
110	GO:0005985: sucrose metabolic process	1.45E-02
111	GO:0010053: root epidermal cell differentiation	1.45E-02
112	GO:0042023: DNA endoreduplication	1.57E-02
113	GO:0019762: glucosinolate catabolic process	1.57E-02
114	GO:0009809: lignin biosynthetic process	1.59E-02
115	GO:0000027: ribosomal large subunit assembly	1.69E-02
116	GO:0005992: trehalose biosynthetic process	1.69E-02
117	GO:0009768: photosynthesis, light harvesting in photosystem I	1.81E-02
118	GO:0007017: microtubule-based process	1.81E-02
119	GO:0009695: jasmonic acid biosynthetic process	1.81E-02
120	GO:0019953: sexual reproduction	1.81E-02
121	GO:0009269: response to desiccation	1.94E-02
122	GO:0031408: oxylipin biosynthetic process	1.94E-02
123	GO:0016226: iron-sulfur cluster assembly	2.07E-02
124	GO:0030245: cellulose catabolic process	2.07E-02
125	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	2.20E-02
126	GO:0009411: response to UV	2.20E-02
127	GO:0071369: cellular response to ethylene stimulus	2.20E-02
128	GO:0009306: protein secretion	2.33E-02
129	GO:0010091: trichome branching	2.33E-02
130	GO:0042127: regulation of cell proliferation	2.33E-02
131	GO:0010584: pollen exine formation	2.33E-02
132	GO:0045454: cell redox homeostasis	2.40E-02
133	GO:0080022: primary root development	2.61E-02
134	GO:0042391: regulation of membrane potential	2.61E-02
135	GO:0055114: oxidation-reduction process	2.61E-02
136	GO:0006662: glycerol ether metabolic process	2.75E-02
137	GO:0048544: recognition of pollen	2.90E-02
138	GO:0015986: ATP synthesis coupled proton transport	2.90E-02
139	GO:0032259: methylation	2.95E-02
140	GO:0009409: response to cold	3.16E-02
141	GO:0006635: fatty acid beta-oxidation	3.20E-02
142	GO:0002229: defense response to oomycetes	3.20E-02
143	GO:0000302: response to reactive oxygen species	3.20E-02
144	GO:0019761: glucosinolate biosynthetic process	3.35E-02
145	GO:0071281: cellular response to iron ion	3.51E-02
146	GO:0006810: transport	3.61E-02
147	GO:0009828: plant-type cell wall loosening	3.67E-02
148	GO:0010252: auxin homeostasis	3.67E-02
149	GO:0071805: potassium ion transmembrane transport	3.83E-02
150	GO:0010150: leaf senescence	3.92E-02
151	GO:0007623: circadian rhythm	3.92E-02
152	GO:0009451: RNA modification	4.01E-02
153	GO:0009627: systemic acquired resistance	4.50E-02
154	GO:0006888: ER to Golgi vesicle-mediated transport	4.67E-02
155	GO:0010411: xyloglucan metabolic process	4.67E-02

Rank	GO Term	Adjusted P value
1	GO:0050236: pyridoxine:NADP 4-dehydrogenase activity	0.00E+00
2	GO:0010301: xanthoxin dehydrogenase activity	0.00E+00
3	GO:0050518: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity	0.00E+00
4	GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity	0.00E+00
5	GO:0019166: trans-2-enoyl-CoA reductase (NADPH) activity	0.00E+00
6	GO:0102193: protein-ribulosamine 3-kinase activity	0.00E+00
7	GO:0102550: 2-methyl-6-geranylgeranyl-1,4-benzoquinol methyltransferase activity	0.00E+00
8	GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity	0.00E+00
9	GO:0016788: hydrolase activity, acting on ester bonds	1.79E-05
10	GO:0019843: rRNA binding	1.88E-05
11	GO:0005528: FK506 binding	1.25E-04
12	GO:0004366: glycerol-3-phosphate O-acyltransferase activity	1.48E-04
13	GO:0051920: peroxiredoxin activity	2.02E-04
14	GO:0052689: carboxylic ester hydrolase activity	2.69E-04
15	GO:0005080: protein kinase C binding	3.19E-04
16	GO:0015121: phosphoenolpyruvate:phosphate antiporter activity	3.19E-04
17	GO:0015245: fatty acid transporter activity	3.19E-04
18	GO:0050308: sugar-phosphatase activity	3.19E-04
19	GO:0051741: 2-methyl-6-phytyl-1,4-benzoquinone methyltransferase activity	3.19E-04
20	GO:0042586: peptide deformylase activity	3.19E-04
21	GO:0047381: dodecanoyl-[acyl-carrier-protein] hydrolase activity	3.19E-04
22	GO:0008809: carnitine racemase activity	3.19E-04
23	GO:0030794: (S)-coclaurine-N-methyltransferase activity	3.19E-04
24	GO:0004321: fatty-acyl-CoA synthase activity	3.19E-04
25	GO:0019203: carbohydrate phosphatase activity	3.19E-04
26	GO:0016209: antioxidant activity	3.32E-04
27	GO:0004033: aldo-keto reductase (NADP) activity	3.32E-04
28	GO:0047746: chlorophyllase activity	6.97E-04
29	GO:0004617: phosphoglycerate dehydrogenase activity	6.97E-04
30	GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity	6.97E-04
31	GO:0016630: protochlorophyllide reductase activity	6.97E-04
32	GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity	6.97E-04
33	GO:0016168: chlorophyll binding	7.53E-04
34	GO:0016742: hydroxymethyl-, formyl- and related transferase activity	1.13E-03
35	GO:0070402: NADPH binding	1.13E-03
36	GO:0008864: formyltetrahydrofolate deformylase activity	1.13E-03
37	GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	1.13E-03
38	GO:0016295: myristoyl-[acyl-carrier-protein] hydrolase activity	1.13E-03
39	GO:0016296: palmitoyl-[acyl-carrier-protein] hydrolase activity	1.13E-03
40	GO:0003865: 3-oxo-5-alpha-steroid 4-dehydrogenase activity	1.62E-03
41	GO:0004165: dodecenoyl-CoA delta-isomerase activity	1.62E-03
42	GO:0016851: magnesium chelatase activity	1.62E-03
43	GO:0003825: alpha,alpha-trehalose-phosphate synthase (UDP-forming) activity	1.62E-03
44	GO:0004392: heme oxygenase (decyclizing) activity	2.18E-03
45	GO:0015120: phosphoglycerate transmembrane transporter activity	2.18E-03
46	GO:0043495: protein anchor	2.18E-03
47	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	2.21E-03
48	GO:0022891: substrate-specific transmembrane transporter activity	2.25E-03
49	GO:0009055: electron carrier activity	2.31E-03
50	GO:0009922: fatty acid elongase activity	2.78E-03
51	GO:0003959: NADPH dehydrogenase activity	2.78E-03
52	GO:0050662: coenzyme binding	3.32E-03
53	GO:0016688: L-ascorbate peroxidase activity	3.43E-03
54	GO:0004130: cytochrome-c peroxidase activity	3.43E-03
55	GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity	3.43E-03
56	GO:2001070: starch binding	3.43E-03
57	GO:0008289: lipid binding	3.65E-03
58	GO:0004723: calcium-dependent protein serine/threonine phosphatase activity	4.13E-03
59	GO:0005242: inward rectifier potassium channel activity	4.13E-03
60	GO:0016746: transferase activity, transferring acyl groups	4.31E-03
61	GO:0016791: phosphatase activity	4.61E-03
62	GO:0019899: enzyme binding	4.87E-03
63	GO:0016597: amino acid binding	5.20E-03
64	GO:0052747: sinapyl alcohol dehydrogenase activity	5.66E-03
65	GO:0008138: protein tyrosine/serine/threonine phosphatase activity	7.36E-03
66	GO:0016627: oxidoreductase activity, acting on the CH-CH group of donors	7.36E-03
67	GO:0016207: 4-coumarate-CoA ligase activity	7.36E-03
68	GO:0047617: acyl-CoA hydrolase activity	8.27E-03
69	GO:0015112: nitrate transmembrane transporter activity	8.27E-03
70	GO:0030234: enzyme regulator activity	9.22E-03
71	GO:0004568: chitinase activity	9.22E-03
72	GO:0008047: enzyme activator activity	9.22E-03
73	GO:0005507: copper ion binding	1.04E-02
74	GO:0045551: cinnamyl-alcohol dehydrogenase activity	1.12E-02
75	GO:0042626: ATPase activity, coupled to transmembrane movement of substances	1.13E-02
76	GO:0042802: identical protein binding	1.13E-02
77	GO:0004565: beta-galactosidase activity	1.23E-02
78	GO:0004022: alcohol dehydrogenase (NAD) activity	1.23E-02
79	GO:0008266: poly(U) RNA binding	1.34E-02
80	GO:0008168: methyltransferase activity	1.39E-02
81	GO:0051287: NAD binding	1.43E-02
82	GO:0102337: 3-oxo-cerotoyl-CoA synthase activity	1.57E-02
83	GO:0102336: 3-oxo-arachidoyl-CoA synthase activity	1.57E-02
84	GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity	1.57E-02
85	GO:0031409: pigment binding	1.57E-02
86	GO:0051536: iron-sulfur cluster binding	1.69E-02
87	GO:0051087: chaperone binding	1.81E-02
88	GO:0045735: nutrient reservoir activity	1.88E-02
89	GO:0004176: ATP-dependent peptidase activity	1.94E-02
90	GO:0030570: pectate lyase activity	2.20E-02
91	GO:0008810: cellulase activity	2.20E-02
92	GO:0003824: catalytic activity	2.22E-02
93	GO:0003735: structural constituent of ribosome	2.34E-02
94	GO:0047134: protein-disulfide reductase activity	2.47E-02
95	GO:0030551: cyclic nucleotide binding	2.61E-02
96	GO:0005249: voltage-gated potassium channel activity	2.61E-02
97	GO:0046933: proton-transporting ATP synthase activity, rotational mechanism	2.75E-02
98	GO:0008080: N-acetyltransferase activity	2.75E-02
99	GO:0004791: thioredoxin-disulfide reductase activity	2.90E-02
100	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	2.93E-02
101	GO:0030246: carbohydrate binding	3.01E-02
102	GO:0016491: oxidoreductase activity	3.02E-02
103	GO:0016762: xyloglucan:xyloglucosyl transferase activity	3.20E-02
104	GO:0004518: nuclease activity	3.35E-02
105	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	3.51E-02
106	GO:0005200: structural constituent of cytoskeleton	3.83E-02
107	GO:0051213: dioxygenase activity	4.16E-02
108	GO:0016798: hydrolase activity, acting on glycosyl bonds	4.67E-02
109	GO:0030247: polysaccharide binding	4.67E-02
110	GO:0005509: calcium ion binding	4.83E-02
111	GO:0008757: S-adenosylmethionine-dependent methyltransferase activity	4.84E-02

Rank	GO Term	Adjusted P value
1	GO:0009515: granal stacked thylakoid	0.00E+00
2	GO:0009507: chloroplast	7.26E-38
3	GO:0009535: chloroplast thylakoid membrane	1.32E-22
4	GO:0009534: chloroplast thylakoid	1.15E-19
5	GO:0009570: chloroplast stroma	2.41E-17
6	GO:0009543: chloroplast thylakoid lumen	7.00E-15
7	GO:0009941: chloroplast envelope	1.97E-13
8	GO:0009579: thylakoid	2.46E-12
9	GO:0031977: thylakoid lumen	1.49E-09
10	GO:0030095: chloroplast photosystem II	3.88E-08
11	GO:0048046: apoplast	1.46E-07
12	GO:0009523: photosystem II	2.90E-05
13	GO:0009654: photosystem II oxygen evolving complex	1.45E-04
14	GO:0009533: chloroplast stromal thylakoid	2.64E-04
15	GO:0009923: fatty acid elongase complex	3.19E-04
16	GO:0019898: extrinsic component of membrane	4.01E-04
17	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	4.90E-04
18	GO:0046658: anchored component of plasma membrane	5.36E-04
19	GO:0010319: stromule	6.06E-04
20	GO:0009706: chloroplast inner membrane	7.33E-04
21	GO:0010287: plastoglobule	9.48E-04
22	GO:0010007: magnesium chelatase complex	1.13E-03
23	GO:0009897: external side of plasma membrane	1.13E-03
24	GO:0015630: microtubule cytoskeleton	1.62E-03
25	GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1)	3.43E-03
26	GO:0005840: ribosome	6.82E-03
27	GO:0008180: COP9 signalosome	7.36E-03
28	GO:0031225: anchored component of membrane	1.21E-02
29	GO:0005578: proteinaceous extracellular matrix	1.23E-02
30	GO:0030076: light-harvesting complex	1.45E-02
31	GO:0005618: cell wall	1.55E-02
32	GO:0016020: membrane	1.77E-02
33	GO:0042651: thylakoid membrane	1.81E-02
34	GO:0031969: chloroplast membrane	1.91E-02
35	GO:0015935: small ribosomal subunit	1.94E-02
36	GO:0016021: integral component of membrane	2.70E-02
37	GO:0009522: photosystem I	2.90E-02
38	GO:0030529: intracellular ribonucleoprotein complex	4.16E-02