Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT1G71500

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0006399: tRNA metabolic process0.00E+00
2GO:0006437: tyrosyl-tRNA aminoacylation0.00E+00
3GO:0002184: cytoplasmic translational termination0.00E+00
4GO:0006780: uroporphyrinogen III biosynthetic process0.00E+00
5GO:0033494: ferulate metabolic process0.00E+00
6GO:0061635: regulation of protein complex stability0.00E+00
7GO:0006428: isoleucyl-tRNA aminoacylation0.00E+00
8GO:0042821: pyridoxal biosynthetic process0.00E+00
9GO:0007638: mechanosensory behavior0.00E+00
10GO:0015805: S-adenosyl-L-methionine transport0.00E+00
11GO:0035970: peptidyl-threonine dephosphorylation0.00E+00
12GO:0070272: proton-transporting ATP synthase complex biogenesis0.00E+00
13GO:0042820: vitamin B6 catabolic process0.00E+00
14GO:0090042: tubulin deacetylation0.00E+00
15GO:0015979: photosynthesis2.58E-09
16GO:0009658: chloroplast organization1.10E-07
17GO:0015976: carbon utilization4.92E-07
18GO:0032544: plastid translation1.30E-05
19GO:0006518: peptide metabolic process1.62E-05
20GO:0009773: photosynthetic electron transport in photosystem I4.02E-05
21GO:0010037: response to carbon dioxide6.44E-05
22GO:2000122: negative regulation of stomatal complex development6.44E-05
23GO:0006546: glycine catabolic process6.44E-05
24GO:0009735: response to cytokinin6.61E-05
25GO:0019253: reductive pentose-phosphate cycle7.46E-05
26GO:0010190: cytochrome b6f complex assembly1.47E-04
27GO:0010196: nonphotochemical quenching2.60E-04
28GO:0016117: carotenoid biosynthetic process2.65E-04
29GO:0000413: protein peptidyl-prolyl isomerization2.95E-04
30GO:0000481: maturation of 5S rRNA3.17E-04
31GO:1904964: positive regulation of phytol biosynthetic process3.17E-04
32GO:0034337: RNA folding3.17E-04
33GO:0071588: hydrogen peroxide mediated signaling pathway3.17E-04
34GO:0009443: pyridoxal 5'-phosphate salvage3.17E-04
35GO:1904966: positive regulation of vitamin E biosynthetic process3.17E-04
36GO:0071482: cellular response to light stimulus4.03E-04
37GO:0009657: plastid organization4.03E-04
38GO:0006810: transport4.75E-04
39GO:0030388: fructose 1,6-bisphosphate metabolic process6.92E-04
40GO:0010270: photosystem II oxygen evolving complex assembly6.92E-04
41GO:0043039: tRNA aminoacylation6.92E-04
42GO:0006695: cholesterol biosynthetic process6.92E-04
43GO:1902326: positive regulation of chlorophyll biosynthetic process6.92E-04
44GO:0034755: iron ion transmembrane transport6.92E-04
45GO:0010027: thylakoid membrane organization6.92E-04
46GO:0006816: calcium ion transport7.70E-04
47GO:0043085: positive regulation of catalytic activity7.70E-04
48GO:0006415: translational termination7.70E-04
49GO:0018298: protein-chromophore linkage9.64E-04
50GO:0009817: defense response to fungus, incompatible interaction9.64E-04
51GO:0006094: gluconeogenesis9.95E-04
52GO:0009767: photosynthetic electron transport chain9.95E-04
53GO:0071492: cellular response to UV-A1.12E-03
54GO:0006696: ergosterol biosynthetic process1.12E-03
55GO:0006000: fructose metabolic process1.12E-03
56GO:0010207: photosystem II assembly1.12E-03
57GO:0006954: inflammatory response1.12E-03
58GO:0010581: regulation of starch biosynthetic process1.12E-03
59GO:0009853: photorespiration1.29E-03
60GO:0045454: cell redox homeostasis1.38E-03
61GO:0019344: cysteine biosynthetic process1.54E-03
62GO:2001141: regulation of RNA biosynthetic process1.61E-03
63GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly1.61E-03
64GO:0007231: osmosensory signaling pathway1.61E-03
65GO:0009152: purine ribonucleotide biosynthetic process1.61E-03
66GO:0046653: tetrahydrofolate metabolic process1.61E-03
67GO:0016556: mRNA modification1.61E-03
68GO:0006418: tRNA aminoacylation for protein translation1.70E-03
69GO:0009768: photosynthesis, light harvesting in photosystem I1.70E-03
70GO:0042742: defense response to bacterium1.91E-03
71GO:0080092: regulation of pollen tube growth2.04E-03
72GO:0006412: translation2.07E-03
73GO:0010021: amylopectin biosynthetic process2.16E-03
74GO:0006542: glutamine biosynthetic process2.16E-03
75GO:0019676: ammonia assimilation cycle2.16E-03
76GO:0071486: cellular response to high light intensity2.16E-03
77GO:0019464: glycine decarboxylation via glycine cleavage system2.16E-03
78GO:0009765: photosynthesis, light harvesting2.16E-03
79GO:0006085: acetyl-CoA biosynthetic process2.16E-03
80GO:0015994: chlorophyll metabolic process2.16E-03
81GO:0033500: carbohydrate homeostasis2.16E-03
82GO:0031365: N-terminal protein amino acid modification2.76E-03
83GO:0006461: protein complex assembly2.76E-03
84GO:0016123: xanthophyll biosynthetic process2.76E-03
85GO:0016120: carotene biosynthetic process2.76E-03
86GO:0006564: L-serine biosynthetic process2.76E-03
87GO:0006096: glycolytic process3.23E-03
88GO:0042254: ribosome biogenesis3.30E-03
89GO:0042549: photosystem II stabilization3.40E-03
90GO:0000470: maturation of LSU-rRNA3.40E-03
91GO:0016554: cytidine to uridine editing3.40E-03
92GO:0006828: manganese ion transport3.40E-03
93GO:0009854: oxidative photosynthetic carbon pathway4.10E-03
94GO:0010019: chloroplast-nucleus signaling pathway4.10E-03
95GO:0010555: response to mannitol4.10E-03
96GO:0042372: phylloquinone biosynthetic process4.10E-03
97GO:0009645: response to low light intensity stimulus4.84E-03
98GO:0006400: tRNA modification4.84E-03
99GO:0048564: photosystem I assembly5.62E-03
100GO:0030091: protein repair5.62E-03
101GO:0009642: response to light intensity5.62E-03
102GO:0009704: de-etiolation5.62E-03
103GO:0032508: DNA duplex unwinding5.62E-03
104GO:0042744: hydrogen peroxide catabolic process6.42E-03
105GO:0017004: cytochrome complex assembly6.44E-03
106GO:0006002: fructose 6-phosphate metabolic process6.44E-03
107GO:0019430: removal of superoxide radicals6.44E-03
108GO:0000373: Group II intron splicing7.30E-03
109GO:0006098: pentose-phosphate shunt7.30E-03
110GO:0045337: farnesyl diphosphate biosynthetic process7.30E-03
111GO:0033384: geranyl diphosphate biosynthetic process7.30E-03
112GO:0006779: porphyrin-containing compound biosynthetic process8.21E-03
113GO:1900865: chloroplast RNA modification8.21E-03
114GO:0010380: regulation of chlorophyll biosynthetic process8.21E-03
115GO:0010119: regulation of stomatal movement8.22E-03
116GO:0006457: protein folding8.60E-03
117GO:0009637: response to blue light9.01E-03
118GO:0043069: negative regulation of programmed cell death9.15E-03
119GO:0006782: protoporphyrinogen IX biosynthetic process9.15E-03
120GO:0006535: cysteine biosynthetic process from serine9.15E-03
121GO:0034599: cellular response to oxidative stress9.42E-03
122GO:0018119: peptidyl-cysteine S-nitrosylation1.01E-02
123GO:0009073: aromatic amino acid family biosynthetic process1.01E-02
124GO:0006879: cellular iron ion homeostasis1.01E-02
125GO:0006352: DNA-templated transcription, initiation1.01E-02
126GO:0009409: response to cold1.10E-02
127GO:0006790: sulfur compound metabolic process1.11E-02
128GO:0010114: response to red light1.16E-02
129GO:0009718: anthocyanin-containing compound biosynthetic process1.22E-02
130GO:0005986: sucrose biosynthetic process1.22E-02
131GO:0006006: glucose metabolic process1.22E-02
132GO:0009644: response to high light intensity1.26E-02
133GO:0010143: cutin biosynthetic process1.33E-02
134GO:0010020: chloroplast fission1.33E-02
135GO:0090351: seedling development1.44E-02
136GO:0070588: calcium ion transmembrane transport1.44E-02
137GO:0046854: phosphatidylinositol phosphorylation1.44E-02
138GO:0005985: sucrose metabolic process1.44E-02
139GO:0000027: ribosomal large subunit assembly1.67E-02
140GO:0080147: root hair cell development1.67E-02
141GO:0016575: histone deacetylation1.80E-02
142GO:0061077: chaperone-mediated protein folding1.92E-02
143GO:0006730: one-carbon metabolic process2.05E-02
144GO:0042335: cuticle development2.59E-02
145GO:0055085: transmembrane transport2.72E-02
146GO:0006662: glycerol ether metabolic process2.73E-02
147GO:0006814: sodium ion transport2.88E-02
148GO:0019252: starch biosynthetic process3.02E-02
149GO:0000302: response to reactive oxygen species3.17E-02
150GO:0008152: metabolic process3.46E-02
151GO:1901657: glycosyl compound metabolic process3.48E-02
152GO:0071805: potassium ion transmembrane transport3.80E-02
153GO:0001666: response to hypoxia4.12E-02
154GO:0055114: oxidation-reduction process4.49E-02
155GO:0015995: chlorophyll biosynthetic process4.63E-02
156GO:0048481: plant ovule development4.98E-02
RankGO TermAdjusted P value
1GO:0004852: uroporphyrinogen-III synthase activity0.00E+00
2GO:0016767: geranylgeranyl-diphosphate geranylgeranyltransferase activity0.00E+00
3GO:0009974: zeinoxanthin epsilon hydroxylase activity0.00E+00
4GO:0050236: pyridoxine:NADP 4-dehydrogenase activity0.00E+00
5GO:0008887: glycerate kinase activity0.00E+00
6GO:0051721: protein phosphatase 2A binding0.00E+00
7GO:0042903: tubulin deacetylase activity0.00E+00
8GO:0045435: lycopene epsilon cyclase activity0.00E+00
9GO:0004822: isoleucine-tRNA ligase activity0.00E+00
10GO:0043014: alpha-tubulin binding0.00E+00
11GO:0046905: phytoene synthase activity0.00E+00
12GO:0008756: o-succinylbenzoate-CoA ligase activity0.00E+00
13GO:0019843: rRNA binding7.57E-08
14GO:0003755: peptidyl-prolyl cis-trans isomerase activity1.01E-07
15GO:0004033: aldo-keto reductase (NADP) activity1.01E-07
16GO:0016149: translation release factor activity, codon specific3.61E-05
17GO:0004089: carbonate dehydratase activity6.16E-05
18GO:0031072: heat shock protein binding6.16E-05
19GO:0016168: chlorophyll binding7.43E-05
20GO:0005528: FK506 binding1.23E-04
21GO:0051920: peroxiredoxin activity2.00E-04
22GO:0046912: transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer3.17E-04
23GO:0080132: fatty acid alpha-hydroxylase activity3.17E-04
24GO:0009496: plastoquinol--plastocyanin reductase activity3.17E-04
25GO:0004831: tyrosine-tRNA ligase activity3.17E-04
26GO:0046028: electron transporter, transferring electrons from cytochrome b6/f complex of photosystem II activity3.17E-04
27GO:0051996: squalene synthase activity3.17E-04
28GO:0016209: antioxidant activity3.28E-04
29GO:0003747: translation release factor activity4.84E-04
30GO:0008047: enzyme activator activity6.67E-04
31GO:0050017: L-3-cyanoalanine synthase activity6.92E-04
32GO:0047746: chlorophyllase activity6.92E-04
33GO:0004618: phosphoglycerate kinase activity6.92E-04
34GO:0004326: tetrahydrofolylpolyglutamate synthase activity6.92E-04
35GO:0004617: phosphoglycerate dehydrogenase activity6.92E-04
36GO:0004047: aminomethyltransferase activity6.92E-04
37GO:0033201: alpha-1,4-glucan synthase activity6.92E-04
38GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity6.92E-04
39GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity6.92E-04
40GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity6.92E-04
41GO:0004310: farnesyl-diphosphate farnesyltransferase activity6.92E-04
42GO:0008967: phosphoglycolate phosphatase activity6.92E-04
43GO:0005089: Rho guanyl-nucleotide exchange factor activity7.70E-04
44GO:0046872: metal ion binding1.01E-03
45GO:0004222: metalloendopeptidase activity1.09E-03
46GO:0016742: hydroxymethyl-, formyl- and related transferase activity1.12E-03
47GO:0070402: NADPH binding1.12E-03
48GO:0008864: formyltetrahydrofolate deformylase activity1.12E-03
49GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor1.12E-03
50GO:0004373: glycogen (starch) synthase activity1.12E-03
51GO:0045158: electron transporter, transferring electrons within cytochrome b6/f complex of photosystem II activity1.12E-03
52GO:0050734: hydroxycinnamoyltransferase activity1.12E-03
53GO:0002161: aminoacyl-tRNA editing activity1.12E-03
54GO:0004148: dihydrolipoyl dehydrogenase activity1.12E-03
55GO:0031409: pigment binding1.39E-03
56GO:0043023: ribosomal large subunit binding1.61E-03
57GO:0008097: 5S rRNA binding1.61E-03
58GO:0008508: bile acid:sodium symporter activity1.61E-03
59GO:0003878: ATP citrate synthase activity1.61E-03
60GO:0004375: glycine dehydrogenase (decarboxylating) activity1.61E-03
61GO:0048487: beta-tubulin binding1.61E-03
62GO:0015079: potassium ion transmembrane transporter activity1.70E-03
63GO:0004659: prenyltransferase activity2.16E-03
64GO:0001053: plastid sigma factor activity2.16E-03
65GO:0005319: lipid transporter activity2.16E-03
66GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor2.16E-03
67GO:0016987: sigma factor activity2.16E-03
68GO:0009011: starch synthase activity2.16E-03
69GO:0043495: protein anchor2.16E-03
70GO:0022891: substrate-specific transmembrane transporter activity2.22E-03
71GO:0004812: aminoacyl-tRNA ligase activity2.62E-03
72GO:0004356: glutamate-ammonia ligase activity2.76E-03
73GO:0016773: phosphotransferase activity, alcohol group as acceptor2.76E-03
74GO:0003735: structural constituent of ribosome3.03E-03
75GO:0004791: thioredoxin-disulfide reductase activity3.28E-03
76GO:0004332: fructose-bisphosphate aldolase activity3.40E-03
77GO:0004130: cytochrome-c peroxidase activity3.40E-03
78GO:0016208: AMP binding3.40E-03
79GO:0016688: L-ascorbate peroxidase activity3.40E-03
80GO:0051082: unfolded protein binding4.09E-03
81GO:0004723: calcium-dependent protein serine/threonine phosphatase activity4.10E-03
82GO:0004124: cysteine synthase activity4.10E-03
83GO:0033743: peptide-methionine (R)-S-oxide reductase activity4.10E-03
84GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity4.10E-03
85GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity4.10E-03
86GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor4.28E-03
87GO:0008235: metalloexopeptidase activity4.84E-03
88GO:0019899: enzyme binding4.84E-03
89GO:0005509: calcium ion binding5.19E-03
90GO:0032041: NAD-dependent histone deacetylase activity (H3-K14 specific)6.44E-03
91GO:0004337: geranyltranstransferase activity7.30E-03
92GO:0016740: transferase activity7.76E-03
93GO:0005381: iron ion transmembrane transporter activity8.21E-03
94GO:0005384: manganese ion transmembrane transporter activity8.21E-03
95GO:0016787: hydrolase activity9.95E-03
96GO:0004177: aminopeptidase activity1.01E-02
97GO:0004161: dimethylallyltranstransferase activity1.01E-02
98GO:0015386: potassium:proton antiporter activity1.01E-02
99GO:0000049: tRNA binding1.11E-02
100GO:0015095: magnesium ion transmembrane transporter activity1.22E-02
101GO:0005262: calcium channel activity1.22E-02
102GO:0051537: 2 iron, 2 sulfur cluster binding1.26E-02
103GO:0008266: poly(U) RNA binding1.33E-02
104GO:0051287: NAD binding1.41E-02
105GO:0004601: peroxidase activity1.43E-02
106GO:0004857: enzyme inhibitor activity1.67E-02
107GO:0004407: histone deacetylase activity1.67E-02
108GO:0019706: protein-cysteine S-palmitoyltransferase activity1.92E-02
109GO:0003756: protein disulfide isomerase activity2.31E-02
110GO:0047134: protein-disulfide reductase activity2.45E-02
111GO:0016853: isomerase activity2.88E-02
112GO:0048038: quinone binding3.17E-02
113GO:0003723: RNA binding3.20E-02
114GO:0016759: cellulose synthase activity3.64E-02
115GO:0008483: transaminase activity3.80E-02
116GO:0008237: metallopeptidase activity3.80E-02
117GO:0016597: amino acid binding3.96E-02
118GO:0009931: calcium-dependent protein serine/threonine kinase activity4.46E-02
119GO:0004683: calmodulin-dependent protein kinase activity4.63E-02
120GO:0102483: scopolin beta-glucosidase activity4.63E-02
121GO:0004721: phosphoprotein phosphatase activity4.63E-02
122GO:0008236: serine-type peptidase activity4.80E-02
123GO:0000982: transcription factor activity, RNA polymerase II core promoter proximal region sequence-specific binding4.80E-02
124GO:0042626: ATPase activity, coupled to transmembrane movement of substances4.90E-02
125GO:0042802: identical protein binding4.90E-02
RankGO TermAdjusted P value
1GO:0009507: chloroplast2.94E-69
2GO:0009535: chloroplast thylakoid membrane1.26E-36
3GO:0009570: chloroplast stroma8.94E-35
4GO:0009941: chloroplast envelope3.92E-34
5GO:0009579: thylakoid1.81E-18
6GO:0009543: chloroplast thylakoid lumen4.83E-18
7GO:0031977: thylakoid lumen2.35E-14
8GO:0009534: chloroplast thylakoid2.43E-12
9GO:0030095: chloroplast photosystem II3.76E-08
10GO:0009654: photosystem II oxygen evolving complex1.34E-07
11GO:0031969: chloroplast membrane2.80E-07
12GO:0019898: extrinsic component of membrane1.08E-06
13GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)1.80E-05
14GO:0010319: stromule5.36E-05
15GO:0042651: thylakoid membrane1.43E-04
16GO:0005840: ribosome1.82E-04
17GO:0009533: chloroplast stromal thylakoid2.60E-04
18GO:0009344: nitrite reductase complex [NAD(P)H]3.17E-04
19GO:0009547: plastid ribosome3.17E-04
20GO:0009782: photosystem I antenna complex3.17E-04
21GO:0043190: ATP-binding cassette (ABC) transporter complex3.17E-04
22GO:0009523: photosystem II3.94E-04
23GO:0010287: plastoglobule9.32E-04
24GO:0030076: light-harvesting complex1.25E-03
25GO:0016020: membrane1.50E-03
26GO:0005960: glycine cleavage complex1.61E-03
27GO:0009346: citrate lyase complex1.61E-03
28GO:0048046: apoplast1.90E-03
29GO:0009512: cytochrome b6f complex2.76E-03
30GO:0005778: peroxisomal membrane4.84E-03
31GO:0022626: cytosolic ribosome5.07E-03
32GO:0009501: amyloplast5.62E-03
33GO:0016324: apical plasma membrane9.15E-03
34GO:0000311: plastid large ribosomal subunit1.11E-02
35GO:0032040: small-subunit processome1.11E-02
36GO:0009508: plastid chromosome1.22E-02
37GO:0030659: cytoplasmic vesicle membrane1.33E-02
38GO:0005875: microtubule associated complex1.56E-02
39GO:0009532: plastid stroma1.92E-02
40GO:0009706: chloroplast inner membrane2.24E-02
41GO:0009536: plastid2.63E-02
42GO:0009522: photosystem I2.88E-02
43GO:0009295: nucleoid3.80E-02
44GO:0030529: intracellular ribonucleoprotein complex4.12E-02
45GO:0009707: chloroplast outer membrane4.98E-02
Gene type



Gene DE type