co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G70670

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0006780: uroporphyrinogen III biosynthetic process	0.00E+00
2	GO:0005996: monosaccharide metabolic process	0.00E+00
3	GO:0007638: mechanosensory behavior	0.00E+00
4	GO:0006066: alcohol metabolic process	0.00E+00
5	GO:0070272: proton-transporting ATP synthase complex biogenesis	0.00E+00
6	GO:0015979: photosynthesis	3.57E-10
7	GO:0009773: photosynthetic electron transport in photosystem I	3.83E-07
8	GO:0032544: plastid translation	6.97E-06
9	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	2.31E-05
10	GO:0009658: chloroplast organization	5.14E-05
11	GO:0061077: chaperone-mediated protein folding	9.62E-05
12	GO:1904964: positive regulation of phytol biosynthetic process	2.46E-04
13	GO:0071588: hydrogen peroxide mediated signaling pathway	2.46E-04
14	GO:0016031: tRNA import into mitochondrion	2.46E-04
15	GO:1904966: positive regulation of vitamin E biosynthetic process	2.46E-04
16	GO:0009657: plastid organization	2.78E-04
17	GO:0015995: chlorophyll biosynthetic process	5.35E-04
18	GO:0006415: translational termination	5.39E-04
19	GO:0030388: fructose 1,6-bisphosphate metabolic process	5.44E-04
20	GO:0046741: transport of virus in host, tissue to tissue	5.44E-04
21	GO:1902326: positive regulation of chlorophyll biosynthetic process	5.44E-04
22	GO:0080165: callose deposition in phloem sieve plate	5.44E-04
23	GO:0009735: response to cytokinin	6.05E-04
24	GO:0005986: sucrose biosynthetic process	7.00E-04
25	GO:0010020: chloroplast fission	7.88E-04
26	GO:0006869: lipid transport	8.52E-04
27	GO:0071492: cellular response to UV-A	8.83E-04
28	GO:0006065: UDP-glucuronate biosynthetic process	8.83E-04
29	GO:0090506: axillary shoot meristem initiation	8.83E-04
30	GO:0006000: fructose metabolic process	8.83E-04
31	GO:0006518: peptide metabolic process	8.83E-04
32	GO:0006508: proteolysis	1.22E-03
33	GO:0043572: plastid fission	1.26E-03
34	GO:0007231: osmosensory signaling pathway	1.26E-03
35	GO:0009152: purine ribonucleotide biosynthetic process	1.26E-03
36	GO:0046653: tetrahydrofolate metabolic process	1.26E-03
37	GO:0010088: phloem development	1.26E-03
38	GO:0010731: protein glutathionylation	1.26E-03
39	GO:0055114: oxidation-reduction process	1.66E-03
40	GO:0010037: response to carbon dioxide	1.68E-03
41	GO:0015976: carbon utilization	1.68E-03
42	GO:0071486: cellular response to high light intensity	1.68E-03
43	GO:0009765: photosynthesis, light harvesting	1.68E-03
44	GO:0045727: positive regulation of translation	1.68E-03
45	GO:0015994: chlorophyll metabolic process	1.68E-03
46	GO:2000122: negative regulation of stomatal complex development	1.68E-03
47	GO:0033500: carbohydrate homeostasis	1.68E-03
48	GO:0006546: glycine catabolic process	1.68E-03
49	GO:0016117: carotenoid biosynthetic process	1.82E-03
50	GO:0006810: transport	1.95E-03
51	GO:0042335: cuticle development	1.97E-03
52	GO:0031365: N-terminal protein amino acid modification	2.15E-03
53	GO:0016123: xanthophyll biosynthetic process	2.15E-03
54	GO:0080110: sporopollenin biosynthetic process	2.15E-03
55	GO:0016120: carotene biosynthetic process	2.15E-03
56	GO:0006564: L-serine biosynthetic process	2.15E-03
57	GO:0006014: D-ribose metabolic process	2.65E-03
58	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	2.65E-03
59	GO:0016554: cytidine to uridine editing	2.65E-03
60	GO:0010190: cytochrome b6f complex assembly	2.65E-03
61	GO:0033365: protein localization to organelle	2.65E-03
62	GO:0042742: defense response to bacterium	2.91E-03
63	GO:0009854: oxidative photosynthetic carbon pathway	3.18E-03
64	GO:0010019: chloroplast-nucleus signaling pathway	3.18E-03
65	GO:0010555: response to mannitol	3.18E-03
66	GO:0009955: adaxial/abaxial pattern specification	3.18E-03
67	GO:0010067: procambium histogenesis	3.18E-03
68	GO:0042026: protein refolding	3.18E-03
69	GO:1901259: chloroplast rRNA processing	3.18E-03
70	GO:0006458: 'de novo' protein folding	3.18E-03
71	GO:0045454: cell redox homeostasis	3.32E-03
72	GO:0010196: nonphotochemical quenching	3.75E-03
73	GO:0006400: tRNA modification	3.75E-03
74	GO:0010027: thylakoid membrane organization	3.76E-03
75	GO:0009642: response to light intensity	4.35E-03
76	GO:0018298: protein-chromophore linkage	4.90E-03
77	GO:0017004: cytochrome complex assembly	4.98E-03
78	GO:0006002: fructose 6-phosphate metabolic process	4.98E-03
79	GO:0090305: nucleic acid phosphodiester bond hydrolysis	5.65E-03
80	GO:0010206: photosystem II repair	5.65E-03
81	GO:0009853: photorespiration	6.21E-03
82	GO:0006779: porphyrin-containing compound biosynthetic process	6.33E-03
83	GO:1900865: chloroplast RNA modification	6.33E-03
84	GO:0034599: cellular response to oxidative stress	6.50E-03
85	GO:0006782: protoporphyrinogen IX biosynthetic process	7.06E-03
86	GO:0009750: response to fructose	7.80E-03
87	GO:0018119: peptidyl-cysteine S-nitrosylation	7.80E-03
88	GO:0006816: calcium ion transport	7.80E-03
89	GO:0019684: photosynthesis, light reaction	7.80E-03
90	GO:0009089: lysine biosynthetic process via diaminopimelate	7.80E-03
91	GO:0043085: positive regulation of catalytic activity	7.80E-03
92	GO:0000272: polysaccharide catabolic process	7.80E-03
93	GO:0005983: starch catabolic process	8.58E-03
94	GO:0042254: ribosome biogenesis	9.14E-03
95	GO:0006094: gluconeogenesis	9.38E-03
96	GO:0010223: secondary shoot formation	1.02E-02
97	GO:0010207: photosystem II assembly	1.02E-02
98	GO:0007034: vacuolar transport	1.02E-02
99	GO:0070588: calcium ion transmembrane transport	1.11E-02
100	GO:0005985: sucrose metabolic process	1.11E-02
101	GO:0019762: glucosinolate catabolic process	1.20E-02
102	GO:0019344: cysteine biosynthetic process	1.29E-02
103	GO:0000027: ribosomal large subunit assembly	1.29E-02
104	GO:0007017: microtubule-based process	1.38E-02
105	GO:0009768: photosynthesis, light harvesting in photosystem I	1.38E-02
106	GO:0007005: mitochondrion organization	1.57E-02
107	GO:0080092: regulation of pollen tube growth	1.57E-02
108	GO:0019748: secondary metabolic process	1.57E-02
109	GO:0030245: cellulose catabolic process	1.57E-02
110	GO:0016226: iron-sulfur cluster assembly	1.57E-02
111	GO:0001944: vasculature development	1.67E-02
112	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	1.67E-02
113	GO:0009294: DNA mediated transformation	1.67E-02
114	GO:0010089: xylem development	1.77E-02
115	GO:0010584: pollen exine formation	1.77E-02
116	GO:0016042: lipid catabolic process	1.86E-02
117	GO:0000413: protein peptidyl-prolyl isomerization	1.99E-02
118	GO:0010087: phloem or xylem histogenesis	1.99E-02
119	GO:0042631: cellular response to water deprivation	1.99E-02
120	GO:0006662: glycerol ether metabolic process	2.09E-02
121	GO:0008152: metabolic process	2.18E-02
122	GO:0048544: recognition of pollen	2.21E-02
123	GO:0019252: starch biosynthetic process	2.32E-02
124	GO:0000302: response to reactive oxygen species	2.43E-02
125	GO:0006413: translational initiation	2.49E-02
126	GO:0007264: small GTPase mediated signal transduction	2.55E-02
127	GO:0009828: plant-type cell wall loosening	2.79E-02
128	GO:0019760: glucosinolate metabolic process	2.79E-02
129	GO:0051607: defense response to virus	3.04E-02
130	GO:0009615: response to virus	3.16E-02
131	GO:0006950: response to stress	3.55E-02
132	GO:0016311: dephosphorylation	3.69E-02
133	GO:0009817: defense response to fungus, incompatible interaction	3.82E-02
134	GO:0000160: phosphorelay signal transduction system	3.96E-02
135	GO:0009611: response to wounding	4.04E-02
136	GO:0010218: response to far red light	4.10E-02
137	GO:0010119: regulation of stomatal movement	4.24E-02
138	GO:0009631: cold acclimation	4.24E-02
139	GO:0009637: response to blue light	4.52E-02
140	GO:0016051: carbohydrate biosynthetic process	4.52E-02
141	GO:0009409: response to cold	4.83E-02

Rank	GO Term	Adjusted P value
1	GO:0004852: uroporphyrinogen-III synthase activity	0.00E+00
2	GO:0051738: xanthophyll binding	0.00E+00
3	GO:0009974: zeinoxanthin epsilon hydroxylase activity	0.00E+00
4	GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity	0.00E+00
5	GO:0046577: long-chain-alcohol oxidase activity	0.00E+00
6	GO:0050518: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity	0.00E+00
7	GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity	0.00E+00
8	GO:0045435: lycopene epsilon cyclase activity	0.00E+00
9	GO:0008887: glycerate kinase activity	0.00E+00
10	GO:0051920: peroxiredoxin activity	1.95E-06
11	GO:0009055: electron carrier activity	4.65E-06
12	GO:0016209: antioxidant activity	4.81E-06
13	GO:0019843: rRNA binding	6.39E-06
14	GO:0016149: translation release factor activity, codon specific	2.31E-05
15	GO:0016168: chlorophyll binding	3.70E-05
16	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	4.19E-05
17	GO:0022891: substrate-specific transmembrane transporter activity	1.26E-04
18	GO:0004723: calcium-dependent protein serine/threonine phosphatase activity	1.34E-04
19	GO:0043621: protein self-association	1.58E-04
20	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	1.80E-04
21	GO:0047259: glucomannan 4-beta-mannosyltransferase activity	2.46E-04
22	GO:0004560: alpha-L-fucosidase activity	2.46E-04
23	GO:0003747: translation release factor activity	3.36E-04
24	GO:0047746: chlorophyllase activity	5.44E-04
25	GO:0010297: heteropolysaccharide binding	5.44E-04
26	GO:0004617: phosphoglycerate dehydrogenase activity	5.44E-04
27	GO:0004047: aminomethyltransferase activity	5.44E-04
28	GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity	5.44E-04
29	GO:0016630: protochlorophyllide reductase activity	5.44E-04
30	GO:0008967: phosphoglycolate phosphatase activity	5.44E-04
31	GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase	5.44E-04
32	GO:0004222: metalloendopeptidase activity	6.90E-04
33	GO:0030267: glyoxylate reductase (NADP) activity	8.83E-04
34	GO:0016742: hydroxymethyl-, formyl- and related transferase activity	8.83E-04
35	GO:0008864: formyltetrahydrofolate deformylase activity	8.83E-04
36	GO:0003979: UDP-glucose 6-dehydrogenase activity	8.83E-04
37	GO:0045174: glutathione dehydrogenase (ascorbate) activity	8.83E-04
38	GO:0005528: FK506 binding	1.08E-03
39	GO:0001872: (1->3)-beta-D-glucan binding	1.26E-03
40	GO:0004659: prenyltransferase activity	1.68E-03
41	GO:0043495: protein anchor	1.68E-03
42	GO:0008289: lipid binding	1.86E-03
43	GO:0016788: hydrolase activity, acting on ester bonds	1.87E-03
44	GO:0016773: phosphotransferase activity, alcohol group as acceptor	2.15E-03
45	GO:0003959: NADPH dehydrogenase activity	2.15E-03
46	GO:0050662: coenzyme binding	2.27E-03
47	GO:0048038: quinone binding	2.61E-03
48	GO:0004130: cytochrome-c peroxidase activity	2.65E-03
49	GO:0016688: L-ascorbate peroxidase activity	2.65E-03
50	GO:0052689: carboxylic ester hydrolase activity	2.94E-03
51	GO:0016157: sucrose synthase activity	3.18E-03
52	GO:0004747: ribokinase activity	3.18E-03
53	GO:0051753: mannan synthase activity	3.18E-03
54	GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity	3.18E-03
55	GO:0008237: metallopeptidase activity	3.35E-03
56	GO:0008235: metalloexopeptidase activity	3.75E-03
57	GO:0019899: enzyme binding	3.75E-03
58	GO:0004033: aldo-keto reductase (NADP) activity	4.35E-03
59	GO:0008865: fructokinase activity	4.35E-03
60	GO:0005507: copper ion binding	5.30E-03
61	GO:0030234: enzyme regulator activity	7.06E-03
62	GO:0008047: enzyme activator activity	7.06E-03
63	GO:0004177: aminopeptidase activity	7.80E-03
64	GO:0044183: protein binding involved in protein folding	7.80E-03
65	GO:0005089: Rho guanyl-nucleotide exchange factor activity	7.80E-03
66	GO:0004185: serine-type carboxypeptidase activity	8.02E-03
67	GO:0004601: peroxidase activity	8.93E-03
68	GO:0004089: carbonate dehydratase activity	9.38E-03
69	GO:0005262: calcium channel activity	9.38E-03
70	GO:0015266: protein channel activity	9.38E-03
71	GO:0051287: NAD binding	9.71E-03
72	GO:0003735: structural constituent of ribosome	1.12E-02
73	GO:0031409: pigment binding	1.20E-02
74	GO:0051536: iron-sulfur cluster binding	1.29E-02
75	GO:0008324: cation transmembrane transporter activity	1.38E-02
76	GO:0004176: ATP-dependent peptidase activity	1.47E-02
77	GO:0033612: receptor serine/threonine kinase binding	1.47E-02
78	GO:0016491: oxidoreductase activity	1.57E-02
79	GO:0008810: cellulase activity	1.67E-02
80	GO:0047134: protein-disulfide reductase activity	1.88E-02
81	GO:0005102: receptor binding	1.88E-02
82	GO:0003924: GTPase activity	1.92E-02
83	GO:0004791: thioredoxin-disulfide reductase activity	2.21E-02
84	GO:0004518: nuclease activity	2.55E-02
85	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	2.67E-02
86	GO:0000156: phosphorelay response regulator activity	2.67E-02
87	GO:0005509: calcium ion binding	2.77E-02
88	GO:0008483: transaminase activity	2.91E-02
89	GO:0016722: oxidoreductase activity, oxidizing metal ions	2.91E-02
90	GO:0005200: structural constituent of cytoskeleton	2.91E-02
91	GO:0008194: UDP-glycosyltransferase activity	2.99E-02
92	GO:0016597: amino acid binding	3.04E-02
93	GO:0003743: translation initiation factor activity	3.12E-02
94	GO:0042802: identical protein binding	3.40E-02
95	GO:0009931: calcium-dependent protein serine/threonine kinase activity	3.42E-02
96	GO:0004683: calmodulin-dependent protein kinase activity	3.55E-02
97	GO:0030247: polysaccharide binding	3.55E-02
98	GO:0016787: hydrolase activity	3.57E-02
99	GO:0008236: serine-type peptidase activity	3.69E-02
100	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	3.82E-02
101	GO:0008168: methyltransferase activity	3.98E-02
102	GO:0046872: metal ion binding	4.47E-02

Rank	GO Term	Adjusted P value
1	GO:0009571: proplastid stroma	0.00E+00
2	GO:0009575: chromoplast stroma	0.00E+00
3	GO:0009507: chloroplast	9.84E-37
4	GO:0009570: chloroplast stroma	5.42E-23
5	GO:0009535: chloroplast thylakoid membrane	1.53E-22
6	GO:0009941: chloroplast envelope	9.56E-22
7	GO:0009534: chloroplast thylakoid	4.98E-10
8	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	9.15E-10
9	GO:0009543: chloroplast thylakoid lumen	1.72E-08
10	GO:0009579: thylakoid	7.10E-08
11	GO:0046658: anchored component of plasma membrane	1.95E-07
12	GO:0048046: apoplast	4.23E-07
13	GO:0031977: thylakoid lumen	8.01E-06
14	GO:0042651: thylakoid membrane	8.32E-05
15	GO:0031225: anchored component of membrane	1.07E-04
16	GO:0009523: photosystem II	2.42E-04
17	GO:0010319: stromule	3.73E-04
18	GO:0031969: chloroplast membrane	5.26E-04
19	GO:0000427: plastid-encoded plastid RNA polymerase complex	5.44E-04
20	GO:0005840: ribosome	9.34E-04
21	GO:0009654: photosystem II oxygen evolving complex	1.19E-03
22	GO:0009517: PSII associated light-harvesting complex II	1.68E-03
23	GO:0019898: extrinsic component of membrane	2.44E-03
24	GO:0010287: plastoglobule	3.17E-03
25	GO:0000815: ESCRT III complex	3.18E-03
26	GO:0009533: chloroplast stromal thylakoid	3.75E-03
27	GO:0005763: mitochondrial small ribosomal subunit	5.65E-03
28	GO:0045298: tubulin complex	5.65E-03
29	GO:0005618: cell wall	6.34E-03
30	GO:0016324: apical plasma membrane	7.06E-03
31	GO:0016020: membrane	7.08E-03
32	GO:0030095: chloroplast photosystem II	1.02E-02
33	GO:0000312: plastid small ribosomal subunit	1.02E-02
34	GO:0030076: light-harvesting complex	1.11E-02
35	GO:0005874: microtubule	1.12E-02
36	GO:0009505: plant-type cell wall	1.45E-02
37	GO:0009532: plastid stroma	1.47E-02
38	GO:0009706: chloroplast inner membrane	1.54E-02
39	GO:0005744: mitochondrial inner membrane presequence translocase complex	1.77E-02
40	GO:0043231: intracellular membrane-bounded organelle	2.18E-02
41	GO:0009522: photosystem I	2.21E-02
42	GO:0005615: extracellular space	2.99E-02
43	GO:0022626: cytosolic ribosome	3.72E-02
44	GO:0009536: plastid	4.20E-02
45	GO:0015934: large ribosomal subunit	4.24E-02