co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G69960

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0070070: proton-transporting V-type ATPase complex assembly	0.00E+00
2	GO:0043171: peptide catabolic process	0.00E+00
3	GO:0000390: spliceosomal complex disassembly	0.00E+00
4	GO:0060213: positive regulation of nuclear-transcribed mRNA poly(A) tail shortening	0.00E+00
5	GO:0048867: stem cell fate determination	0.00E+00
6	GO:0000380: alternative mRNA splicing, via spliceosome	4.56E-05
7	GO:1990641: response to iron ion starvation	1.95E-04
8	GO:0072684: mitochondrial tRNA 3'-trailer cleavage, endonucleolytic	1.95E-04
9	GO:1902265: abscisic acid homeostasis	1.95E-04
10	GO:0000291: nuclear-transcribed mRNA catabolic process, exonucleolytic	1.95E-04
11	GO:0032509: endosome transport via multivesicular body sorting pathway	4.38E-04
12	GO:0006101: citrate metabolic process	4.38E-04
13	GO:0030003: cellular cation homeostasis	4.38E-04
14	GO:0045948: positive regulation of translational initiation	4.38E-04
15	GO:0048209: regulation of vesicle targeting, to, from or within Golgi	4.38E-04
16	GO:0034398: telomere tethering at nuclear periphery	4.38E-04
17	GO:0001736: establishment of planar polarity	4.38E-04
18	GO:0031204: posttranslational protein targeting to membrane, translocation	4.38E-04
19	GO:0006611: protein export from nucleus	4.38E-04
20	GO:0032012: regulation of ARF protein signal transduction	7.14E-04
21	GO:0006954: inflammatory response	7.14E-04
22	GO:0016255: attachment of GPI anchor to protein	7.14E-04
23	GO:0042780: tRNA 3'-end processing	7.14E-04
24	GO:0090630: activation of GTPase activity	7.14E-04
25	GO:0000055: ribosomal large subunit export from nucleus	7.14E-04
26	GO:0034414: tRNA 3'-trailer cleavage, endonucleolytic	7.14E-04
27	GO:0042256: mature ribosome assembly	7.14E-04
28	GO:0006406: mRNA export from nucleus	7.89E-04
29	GO:0006874: cellular calcium ion homeostasis	8.68E-04
30	GO:0070072: vacuolar proton-transporting V-type ATPase complex assembly	1.02E-03
31	GO:0015749: monosaccharide transport	1.02E-03
32	GO:0009963: positive regulation of flavonoid biosynthetic process	1.02E-03
33	GO:0051601: exocyst localization	1.02E-03
34	GO:0000973: posttranscriptional tethering of RNA polymerase II gene DNA at nuclear periphery	1.02E-03
35	GO:0006882: cellular zinc ion homeostasis	1.02E-03
36	GO:0051028: mRNA transport	1.32E-03
37	GO:0042273: ribosomal large subunit biogenesis	1.35E-03
38	GO:0006878: cellular copper ion homeostasis	1.35E-03
39	GO:0006646: phosphatidylethanolamine biosynthetic process	1.35E-03
40	GO:0009687: abscisic acid metabolic process	1.35E-03
41	GO:0015743: malate transport	1.35E-03
42	GO:0048544: recognition of pollen	1.65E-03
43	GO:0007029: endoplasmic reticulum organization	1.72E-03
44	GO:0006635: fatty acid beta-oxidation	1.89E-03
45	GO:0010264: myo-inositol hexakisphosphate biosynthetic process	2.12E-03
46	GO:0042732: D-xylose metabolic process	2.12E-03
47	GO:0007035: vacuolar acidification	2.12E-03
48	GO:0000741: karyogamy	2.12E-03
49	GO:0000060: protein import into nucleus, translocation	2.12E-03
50	GO:0000911: cytokinesis by cell plate formation	2.54E-03
51	GO:0009942: longitudinal axis specification	2.54E-03
52	GO:0009769: photosynthesis, light harvesting in photosystem II	3.00E-03
53	GO:0006333: chromatin assembly or disassembly	3.00E-03
54	GO:0048573: photoperiodism, flowering	3.19E-03
55	GO:0007155: cell adhesion	3.47E-03
56	GO:0009061: anaerobic respiration	3.47E-03
57	GO:0009819: drought recovery	3.47E-03
58	GO:0006491: N-glycan processing	3.47E-03
59	GO:0006875: cellular metal ion homeostasis	3.47E-03
60	GO:0032508: DNA duplex unwinding	3.47E-03
61	GO:0006102: isocitrate metabolic process	3.47E-03
62	GO:0006811: ion transport	3.89E-03
63	GO:0009880: embryonic pattern specification	3.97E-03
64	GO:0060321: acceptance of pollen	3.97E-03
65	GO:0001510: RNA methylation	3.97E-03
66	GO:0006367: transcription initiation from RNA polymerase II promoter	3.97E-03
67	GO:0010119: regulation of stomatal movement	4.08E-03
68	GO:0010043: response to zinc ion	4.08E-03
69	GO:0045087: innate immune response	4.47E-03
70	GO:0006098: pentose-phosphate shunt	4.49E-03
71	GO:0000184: nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	4.49E-03
72	GO:0046916: cellular transition metal ion homeostasis	4.49E-03
73	GO:0006099: tricarboxylic acid cycle	4.67E-03
74	GO:0090332: stomatal closure	5.04E-03
75	GO:0006897: endocytosis	5.31E-03
76	GO:0042542: response to hydrogen peroxide	5.53E-03
77	GO:0009970: cellular response to sulfate starvation	5.61E-03
78	GO:0006995: cellular response to nitrogen starvation	5.61E-03
79	GO:0009870: defense response signaling pathway, resistance gene-dependent	5.61E-03
80	GO:0006816: calcium ion transport	6.20E-03
81	GO:0048765: root hair cell differentiation	6.20E-03
82	GO:0010152: pollen maturation	6.81E-03
83	GO:0009846: pollen germination	7.22E-03
84	GO:0010102: lateral root morphogenesis	7.44E-03
85	GO:0010540: basipetal auxin transport	8.10E-03
86	GO:0019853: L-ascorbic acid biosynthetic process	8.77E-03
87	GO:0010030: positive regulation of seed germination	8.77E-03
88	GO:0034976: response to endoplasmic reticulum stress	9.46E-03
89	GO:0006886: intracellular protein transport	1.01E-02
90	GO:0006487: protein N-linked glycosylation	1.02E-02
91	GO:0009695: jasmonic acid biosynthetic process	1.09E-02
92	GO:0009768: photosynthesis, light harvesting in photosystem I	1.09E-02
93	GO:0010073: meristem maintenance	1.09E-02
94	GO:0006825: copper ion transport	1.09E-02
95	GO:0006396: RNA processing	1.14E-02
96	GO:0010227: floral organ abscission	1.32E-02
97	GO:0006012: galactose metabolic process	1.32E-02
98	GO:0042147: retrograde transport, endosome to Golgi	1.48E-02
99	GO:0015991: ATP hydrolysis coupled proton transport	1.57E-02
100	GO:0042391: regulation of membrane potential	1.57E-02
101	GO:0010501: RNA secondary structure unwinding	1.57E-02
102	GO:0000413: protein peptidyl-prolyl isomerization	1.57E-02
103	GO:0010087: phloem or xylem histogenesis	1.57E-02
104	GO:0006606: protein import into nucleus	1.57E-02
105	GO:0010197: polar nucleus fusion	1.65E-02
106	GO:0046323: glucose import	1.65E-02
107	GO:0015986: ATP synthesis coupled proton transport	1.74E-02
108	GO:0006814: sodium ion transport	1.74E-02
109	GO:0042752: regulation of circadian rhythm	1.74E-02
110	GO:0016036: cellular response to phosphate starvation	1.79E-02
111	GO:0006623: protein targeting to vacuole	1.83E-02
112	GO:0008654: phospholipid biosynthetic process	1.83E-02
113	GO:0007623: circadian rhythm	1.92E-02
114	GO:0006891: intra-Golgi vesicle-mediated transport	1.92E-02
115	GO:0007165: signal transduction	1.95E-02
116	GO:0010583: response to cyclopentenone	2.01E-02
117	GO:0032502: developmental process	2.01E-02
118	GO:0010228: vegetative to reproductive phase transition of meristem	2.01E-02
119	GO:0010252: auxin homeostasis	2.20E-02
120	GO:0006914: autophagy	2.20E-02
121	GO:0010286: heat acclimation	2.30E-02
122	GO:0009911: positive regulation of flower development	2.50E-02
123	GO:0001666: response to hypoxia	2.50E-02
124	GO:0009788: negative regulation of abscisic acid-activated signaling pathway	2.60E-02
125	GO:0009416: response to light stimulus	2.61E-02
126	GO:0006950: response to stress	2.80E-02
127	GO:0016049: cell growth	2.91E-02
128	GO:0009409: response to cold	2.99E-02
129	GO:0048481: plant ovule development	3.02E-02
130	GO:0018298: protein-chromophore linkage	3.02E-02
131	GO:0010311: lateral root formation	3.12E-02
132	GO:0006970: response to osmotic stress	3.20E-02
133	GO:0009834: plant-type secondary cell wall biogenesis	3.23E-02
134	GO:0009910: negative regulation of flower development	3.34E-02
135	GO:0016051: carbohydrate biosynthetic process	3.57E-02
136	GO:0080167: response to karrikin	3.68E-02
137	GO:0016192: vesicle-mediated transport	3.87E-02
138	GO:0030001: metal ion transport	3.92E-02
139	GO:0006887: exocytosis	4.03E-02
140	GO:0006952: defense response	4.09E-02
141	GO:0051707: response to other organism	4.27E-02
142	GO:0009926: auxin polar transport	4.27E-02
143	GO:0009651: response to salt stress	4.30E-02
144	GO:0008643: carbohydrate transport	4.52E-02
145	GO:0000165: MAPK cascade	4.89E-02

Rank	GO Term	Adjusted P value
1	GO:0047205: quinate O-hydroxycinnamoyltransferase activity	0.00E+00
2	GO:0010349: L-galactose dehydrogenase activity	0.00E+00
3	GO:0047172: shikimate O-hydroxycinnamoyltransferase activity	0.00E+00
4	GO:0009045: xylose isomerase activity	0.00E+00
5	GO:0010292: GTP:GDP antiporter activity	0.00E+00
6	GO:0050513: glycoprotein 2-beta-D-xylosyltransferase activity	0.00E+00
7	GO:0005358: high-affinity hydrogen:glucose symporter activity	0.00E+00
8	GO:0016428: tRNA (cytosine-5-)-methyltransferase activity	0.00E+00
9	GO:1990446: U1 snRNP binding	0.00E+00
10	GO:0005272: sodium channel activity	0.00E+00
11	GO:0019829: cation-transporting ATPase activity	6.66E-06
12	GO:0004525: ribonuclease III activity	1.59E-04
13	GO:0010013: N-1-naphthylphthalamic acid binding	1.95E-04
14	GO:0008692: 3-hydroxybutyryl-CoA epimerase activity	1.95E-04
15	GO:0046870: cadmium ion binding	1.95E-04
16	GO:0070006: metalloaminopeptidase activity	1.95E-04
17	GO:0009679: hexose:proton symporter activity	1.95E-04
18	GO:0004177: aminopeptidase activity	3.91E-04
19	GO:0003994: aconitate hydratase activity	4.38E-04
20	GO:0003857: 3-hydroxyacyl-CoA dehydrogenase activity	4.38E-04
21	GO:0003923: GPI-anchor transamidase activity	4.38E-04
22	GO:0032791: lead ion binding	4.38E-04
23	GO:0016891: endoribonuclease activity, producing 5'-phosphomonoesters	4.38E-04
24	GO:0004609: phosphatidylserine decarboxylase activity	4.38E-04
25	GO:0042781: 3'-tRNA processing endoribonuclease activity	7.14E-04
26	GO:0004096: catalase activity	7.14E-04
27	GO:0003729: mRNA binding	9.65E-04
28	GO:0048027: mRNA 5'-UTR binding	1.02E-03
29	GO:0000285: 1-phosphatidylinositol-3-phosphate 5-kinase activity	1.02E-03
30	GO:0004108: citrate (Si)-synthase activity	1.02E-03
31	GO:0030527: structural constituent of chromatin	1.02E-03
32	GO:0043023: ribosomal large subunit binding	1.02E-03
33	GO:0004165: dodecenoyl-CoA delta-isomerase activity	1.02E-03
34	GO:0004300: enoyl-CoA hydratase activity	1.02E-03
35	GO:0004737: pyruvate decarboxylase activity	1.35E-03
36	GO:0005086: ARF guanyl-nucleotide exchange factor activity	1.35E-03
37	GO:0009044: xylan 1,4-beta-xylosidase activity	1.35E-03
38	GO:0005253: anion channel activity	1.35E-03
39	GO:0042277: peptide binding	1.35E-03
40	GO:0010294: abscisic acid glucosyltransferase activity	1.72E-03
41	GO:0015145: monosaccharide transmembrane transporter activity	1.72E-03
42	GO:0045300: acyl-[acyl-carrier-protein] desaturase activity	1.72E-03
43	GO:0042285: xylosyltransferase activity	1.72E-03
44	GO:0002020: protease binding	1.72E-03
45	GO:0031369: translation initiation factor binding	2.12E-03
46	GO:0051117: ATPase binding	2.12E-03
47	GO:0030976: thiamine pyrophosphate binding	2.12E-03
48	GO:0003950: NAD+ ADP-ribosyltransferase activity	2.54E-03
49	GO:0005261: cation channel activity	2.54E-03
50	GO:0003730: mRNA 3'-UTR binding	2.54E-03
51	GO:0016831: carboxy-lyase activity	3.00E-03
52	GO:0015140: malate transmembrane transporter activity	3.00E-03
53	GO:0004033: aldo-keto reductase (NADP) activity	3.47E-03
54	GO:0017056: structural constituent of nuclear pore	3.47E-03
55	GO:0015288: porin activity	3.47E-03
56	GO:0005267: potassium channel activity	3.97E-03
57	GO:0005375: copper ion transmembrane transporter activity	3.97E-03
58	GO:0050897: cobalt ion binding	4.08E-03
59	GO:0003697: single-stranded DNA binding	4.47E-03
60	GO:0009815: 1-aminocyclopropane-1-carboxylate oxidase activity	4.49E-03
61	GO:0005487: nucleocytoplasmic transporter activity	5.04E-03
62	GO:0015020: glucuronosyltransferase activity	5.61E-03
63	GO:0016308: 1-phosphatidylinositol-4-phosphate 5-kinase activity	5.61E-03
64	GO:0046961: proton-transporting ATPase activity, rotational mechanism	6.20E-03
65	GO:0005388: calcium-transporting ATPase activity	7.44E-03
66	GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism	7.44E-03
67	GO:0008139: nuclear localization sequence binding	7.44E-03
68	GO:0005262: calcium channel activity	7.44E-03
69	GO:0030553: cGMP binding	8.77E-03
70	GO:0005217: intracellular ligand-gated ion channel activity	8.77E-03
71	GO:0004970: ionotropic glutamate receptor activity	8.77E-03
72	GO:0030552: cAMP binding	8.77E-03
73	GO:0031409: pigment binding	9.46E-03
74	GO:0043424: protein histidine kinase binding	1.09E-02
75	GO:0005216: ion channel activity	1.09E-02
76	GO:0004722: protein serine/threonine phosphatase activity	1.09E-02
77	GO:0004707: MAP kinase activity	1.17E-02
78	GO:0003756: protein disulfide isomerase activity	1.40E-02
79	GO:0003723: RNA binding	1.40E-02
80	GO:0003727: single-stranded RNA binding	1.40E-02
81	GO:0030551: cyclic nucleotide binding	1.57E-02
82	GO:0005249: voltage-gated potassium channel activity	1.57E-02
83	GO:0008536: Ran GTPase binding	1.65E-02
84	GO:0030276: clathrin binding	1.65E-02
85	GO:0015144: carbohydrate transmembrane transporter activity	1.66E-02
86	GO:0016301: kinase activity	1.69E-02
87	GO:0005351: sugar:proton symporter activity	1.87E-02
88	GO:0016791: phosphatase activity	2.20E-02
89	GO:0042802: identical protein binding	2.44E-02
90	GO:0016168: chlorophyll binding	2.60E-02
91	GO:0008375: acetylglucosaminyltransferase activity	2.70E-02
92	GO:0004721: phosphoprotein phosphatase activity	2.80E-02
93	GO:0004004: ATP-dependent RNA helicase activity	2.80E-02
94	GO:0046982: protein heterodimerization activity	2.91E-02
95	GO:0005096: GTPase activator activity	3.12E-02
96	GO:0030145: manganese ion binding	3.34E-02
97	GO:0004672: protein kinase activity	3.36E-02
98	GO:0000149: SNARE binding	3.80E-02
99	GO:0051539: 4 iron, 4 sulfur cluster binding	3.92E-02
100	GO:0005507: copper ion binding	4.04E-02
101	GO:0008270: zinc ion binding	4.68E-02
102	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	4.77E-02

Rank	GO Term	Adjusted P value
1	GO:0031981: nuclear lumen	0.00E+00
2	GO:0071008: U2-type post-mRNA release spliceosomal complex	0.00E+00
3	GO:0005777: peroxisome	9.67E-05
4	GO:0012510: trans-Golgi network transport vesicle membrane	1.95E-04
5	GO:0005783: endoplasmic reticulum	1.99E-04
6	GO:0016021: integral component of membrane	2.42E-04
7	GO:0032777: Piccolo NuA4 histone acetyltransferase complex	4.38E-04
8	GO:0005797: Golgi medial cisterna	7.14E-04
9	GO:0044614: nuclear pore cytoplasmic filaments	7.14E-04
10	GO:0042765: GPI-anchor transamidase complex	7.14E-04
11	GO:0005886: plasma membrane	1.31E-03
12	GO:0005776: autophagosome	1.35E-03
13	GO:0016471: vacuolar proton-transporting V-type ATPase complex	1.35E-03
14	GO:0010008: endosome membrane	1.39E-03
15	GO:0009506: plasmodesma	1.59E-03
16	GO:0000220: vacuolar proton-transporting V-type ATPase, V0 domain	1.72E-03
17	GO:0005794: Golgi apparatus	1.74E-03
18	GO:0031965: nuclear membrane	1.76E-03
19	GO:0016363: nuclear matrix	2.54E-03
20	GO:0005829: cytosol	2.69E-03
21	GO:0030687: preribosome, large subunit precursor	3.00E-03
22	GO:0030131: clathrin adaptor complex	3.47E-03
23	GO:0005802: trans-Golgi network	3.63E-03
24	GO:0000786: nucleosome	4.27E-03
25	GO:0031090: organelle membrane	4.49E-03
26	GO:0005768: endosome	4.55E-03
27	GO:0030125: clathrin vesicle coat	5.61E-03
28	GO:0005773: vacuole	5.72E-03
29	GO:0005884: actin filament	6.20E-03
30	GO:0005665: DNA-directed RNA polymerase II, core complex	6.81E-03
31	GO:0005578: proteinaceous extracellular matrix	7.44E-03
32	GO:0005795: Golgi stack	8.77E-03
33	GO:0030076: light-harvesting complex	8.77E-03
34	GO:0042651: thylakoid membrane	1.09E-02
35	GO:0005789: endoplasmic reticulum membrane	1.14E-02
36	GO:0005905: clathrin-coated pit	1.17E-02
37	GO:0031410: cytoplasmic vesicle	1.24E-02
38	GO:0030136: clathrin-coated vesicle	1.48E-02
39	GO:0005770: late endosome	1.65E-02
40	GO:0009522: photosystem I	1.74E-02
41	GO:0009523: photosystem II	1.83E-02
42	GO:0009705: plant-type vacuole membrane	1.92E-02
43	GO:0000785: chromatin	2.01E-02
44	GO:0000145: exocyst	2.01E-02
45	GO:0032580: Golgi cisterna membrane	2.20E-02
46	GO:0005618: cell wall	2.20E-02
47	GO:0000932: P-body	2.50E-02
48	GO:0016020: membrane	2.71E-02
49	GO:0000139: Golgi membrane	2.99E-02
50	GO:0005643: nuclear pore	3.02E-02
51	GO:0000325: plant-type vacuole	3.34E-02
52	GO:0031902: late endosome membrane	4.03E-02
53	GO:0005856: cytoskeleton	4.64E-02