co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G69690

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0035563: positive regulation of chromatin binding	0.00E+00
2	GO:0006066: alcohol metabolic process	0.00E+00
3	GO:0060966: regulation of gene silencing by RNA	0.00E+00
4	GO:0030397: membrane disassembly	0.00E+00
5	GO:0070829: heterochromatin maintenance	0.00E+00
6	GO:0071360: cellular response to exogenous dsRNA	0.00E+00
7	GO:1900370: positive regulation of RNA interference	0.00E+00
8	GO:0090470: shoot organ boundary specification	0.00E+00
9	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	3.65E-07
10	GO:0016042: lipid catabolic process	1.59E-05
11	GO:0042759: long-chain fatty acid biosynthetic process	1.20E-04
12	GO:0005991: trehalose metabolic process	1.20E-04
13	GO:0071596: ubiquitin-dependent protein catabolic process via the N-end rule pathway	1.20E-04
14	GO:1900368: regulation of RNA interference	1.20E-04
15	GO:0010311: lateral root formation	1.72E-04
16	GO:0009773: photosynthetic electron transport in photosystem I	1.96E-04
17	GO:0010115: regulation of abscisic acid biosynthetic process	2.77E-04
18	GO:0001736: establishment of planar polarity	2.77E-04
19	GO:1900111: positive regulation of histone H3-K9 dimethylation	2.77E-04
20	GO:0010024: phytochromobilin biosynthetic process	2.77E-04
21	GO:0010025: wax biosynthetic process	3.68E-04
22	GO:0006788: heme oxidation	4.58E-04
23	GO:0015714: phosphoenolpyruvate transport	4.58E-04
24	GO:0090391: granum assembly	4.58E-04
25	GO:0032776: DNA methylation on cytosine	4.58E-04
26	GO:0060968: regulation of gene silencing	4.58E-04
27	GO:1901332: negative regulation of lateral root development	6.57E-04
28	GO:0060964: regulation of gene silencing by miRNA	6.57E-04
29	GO:0010371: regulation of gibberellin biosynthetic process	6.57E-04
30	GO:0042335: cuticle development	7.45E-04
31	GO:0010182: sugar mediated signaling pathway	8.00E-04
32	GO:0015713: phosphoglycerate transport	8.72E-04
33	GO:0034440: lipid oxidation	8.72E-04
34	GO:0009956: radial pattern formation	8.72E-04
35	GO:0006183: GTP biosynthetic process	8.72E-04
36	GO:0045727: positive regulation of translation	8.72E-04
37	GO:0006564: L-serine biosynthetic process	1.10E-03
38	GO:0018258: protein O-linked glycosylation via hydroxyproline	1.35E-03
39	GO:0009913: epidermal cell differentiation	1.35E-03
40	GO:0006561: proline biosynthetic process	1.35E-03
41	GO:0010405: arabinogalactan protein metabolic process	1.35E-03
42	GO:0010027: thylakoid membrane organization	1.39E-03
43	GO:0006694: steroid biosynthetic process	1.61E-03
44	GO:1900057: positive regulation of leaf senescence	1.89E-03
45	GO:0009395: phospholipid catabolic process	1.89E-03
46	GO:0009772: photosynthetic electron transport in photosystem II	1.89E-03
47	GO:0010196: nonphotochemical quenching	1.89E-03
48	GO:0009735: response to cytokinin	2.03E-03
49	GO:0006865: amino acid transport	2.18E-03
50	GO:0070413: trehalose metabolism in response to stress	2.19E-03
51	GO:0030091: protein repair	2.19E-03
52	GO:0006605: protein targeting	2.19E-03
53	GO:0055075: potassium ion homeostasis	2.19E-03
54	GO:0016559: peroxisome fission	2.19E-03
55	GO:0008610: lipid biosynthetic process	2.19E-03
56	GO:0032544: plastid translation	2.50E-03
57	GO:0009808: lignin metabolic process	2.50E-03
58	GO:0034765: regulation of ion transmembrane transport	2.82E-03
59	GO:0009688: abscisic acid biosynthetic process	3.51E-03
60	GO:0030422: production of siRNA involved in RNA interference	3.51E-03
61	GO:0048829: root cap development	3.51E-03
62	GO:0015979: photosynthesis	3.82E-03
63	GO:0008285: negative regulation of cell proliferation	3.88E-03
64	GO:0009750: response to fructose	3.88E-03
65	GO:0048765: root hair cell differentiation	3.88E-03
66	GO:0010015: root morphogenesis	3.88E-03
67	GO:0000038: very long-chain fatty acid metabolic process	3.88E-03
68	GO:0006857: oligopeptide transport	4.21E-03
69	GO:0016024: CDP-diacylglycerol biosynthetic process	4.26E-03
70	GO:0015706: nitrate transport	4.26E-03
71	GO:0006820: anion transport	4.26E-03
72	GO:0006869: lipid transport	4.56E-03
73	GO:0009718: anthocyanin-containing compound biosynthetic process	4.64E-03
74	GO:0009725: response to hormone	4.64E-03
75	GO:0010020: chloroplast fission	5.04E-03
76	GO:0009933: meristem structural organization	5.04E-03
77	GO:0010143: cutin biosynthetic process	5.04E-03
78	GO:0071732: cellular response to nitric oxide	5.46E-03
79	GO:0010030: positive regulation of seed germination	5.46E-03
80	GO:0080188: RNA-directed DNA methylation	5.46E-03
81	GO:0010167: response to nitrate	5.46E-03
82	GO:0005992: trehalose biosynthetic process	6.32E-03
83	GO:0007017: microtubule-based process	6.76E-03
84	GO:0009695: jasmonic acid biosynthetic process	6.76E-03
85	GO:0010073: meristem maintenance	6.76E-03
86	GO:0019953: sexual reproduction	6.76E-03
87	GO:0031408: oxylipin biosynthetic process	7.22E-03
88	GO:0003333: amino acid transmembrane transport	7.22E-03
89	GO:0016998: cell wall macromolecule catabolic process	7.22E-03
90	GO:0006306: DNA methylation	7.22E-03
91	GO:0006468: protein phosphorylation	7.66E-03
92	GO:0030245: cellulose catabolic process	7.69E-03
93	GO:0009734: auxin-activated signaling pathway	8.18E-03
94	GO:0071369: cellular response to ethylene stimulus	8.18E-03
95	GO:0040007: growth	8.18E-03
96	GO:0010227: floral organ abscission	8.18E-03
97	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	8.18E-03
98	GO:0009306: protein secretion	8.66E-03
99	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	9.17E-03
100	GO:0042391: regulation of membrane potential	9.68E-03
101	GO:0080022: primary root development	9.68E-03
102	GO:0042631: cellular response to water deprivation	9.68E-03
103	GO:0010305: leaf vascular tissue pattern formation	1.02E-02
104	GO:0009958: positive gravitropism	1.02E-02
105	GO:0009741: response to brassinosteroid	1.02E-02
106	GO:0015986: ATP synthesis coupled proton transport	1.07E-02
107	GO:0009416: response to light stimulus	1.10E-02
108	GO:0016132: brassinosteroid biosynthetic process	1.18E-02
109	GO:0005975: carbohydrate metabolic process	1.27E-02
110	GO:0071281: cellular response to iron ion	1.30E-02
111	GO:0009828: plant-type cell wall loosening	1.36E-02
112	GO:0071805: potassium ion transmembrane transport	1.41E-02
113	GO:0009826: unidimensional cell growth	1.44E-02
114	GO:0009816: defense response to bacterium, incompatible interaction	1.60E-02
115	GO:0009627: systemic acquired resistance	1.66E-02
116	GO:0042128: nitrate assimilation	1.66E-02
117	GO:0010411: xyloglucan metabolic process	1.72E-02
118	GO:0015995: chlorophyll biosynthetic process	1.72E-02
119	GO:0009832: plant-type cell wall biogenesis	1.92E-02
120	GO:0000160: phosphorelay signal transduction system	1.92E-02
121	GO:0009834: plant-type secondary cell wall biogenesis	1.99E-02
122	GO:0007568: aging	2.05E-02
123	GO:0009640: photomorphogenesis	2.63E-02
124	GO:0009926: auxin polar transport	2.63E-02
125	GO:0009744: response to sucrose	2.63E-02
126	GO:0071555: cell wall organization	2.67E-02
127	GO:0042546: cell wall biogenesis	2.70E-02
128	GO:0006979: response to oxidative stress	2.70E-02
129	GO:0009408: response to heat	2.74E-02
130	GO:0008643: carbohydrate transport	2.78E-02
131	GO:0006855: drug transmembrane transport	2.93E-02
132	GO:0009753: response to jasmonic acid	2.94E-02
133	GO:0009664: plant-type cell wall organization	3.09E-02
134	GO:0009733: response to auxin	3.09E-02
135	GO:0009809: lignin biosynthetic process	3.25E-02
136	GO:0006364: rRNA processing	3.25E-02
137	GO:0009736: cytokinin-activated signaling pathway	3.25E-02
138	GO:0009409: response to cold	3.89E-02
139	GO:0009624: response to nematode	4.17E-02
140	GO:0006810: transport	4.29E-02
141	GO:0009742: brassinosteroid mediated signaling pathway	4.35E-02
142	GO:0009611: response to wounding	4.94E-02

Rank	GO Term	Adjusted P value
1	GO:0019146: arabinose-5-phosphate isomerase activity	0.00E+00
2	GO:0050614: delta24-sterol reductase activity	0.00E+00
3	GO:0046577: long-chain-alcohol oxidase activity	0.00E+00
4	GO:0010301: xanthoxin dehydrogenase activity	0.00E+00
5	GO:0052689: carboxylic ester hydrolase activity	4.60E-07
6	GO:0016788: hydrolase activity, acting on ester bonds	3.22E-06
7	GO:1990136: linoleate 9S-lipoxygenase activity	1.20E-04
8	GO:0019210: kinase inhibitor activity	1.20E-04
9	GO:0015121: phosphoenolpyruvate:phosphate antiporter activity	1.20E-04
10	GO:0004617: phosphoglycerate dehydrogenase activity	2.77E-04
11	GO:0003938: IMP dehydrogenase activity	2.77E-04
12	GO:0015293: symporter activity	3.66E-04
13	GO:0001872: (1->3)-beta-D-glucan binding	6.57E-04
14	GO:0003825: alpha,alpha-trehalose-phosphate synthase (UDP-forming) activity	6.57E-04
15	GO:0016746: transferase activity, transferring acyl groups	7.49E-04
16	GO:0004392: heme oxygenase (decyclizing) activity	8.72E-04
17	GO:0015120: phosphoglycerate transmembrane transporter activity	8.72E-04
18	GO:0010011: auxin binding	8.72E-04
19	GO:0010328: auxin influx transmembrane transporter activity	8.72E-04
20	GO:0052793: pectin acetylesterase activity	8.72E-04
21	GO:0008381: mechanically-gated ion channel activity	1.10E-03
22	GO:0016791: phosphatase activity	1.17E-03
23	GO:0004366: glycerol-3-phosphate O-acyltransferase activity	1.35E-03
24	GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity	1.35E-03
25	GO:1990714: hydroxyproline O-galactosyltransferase activity	1.35E-03
26	GO:0005242: inward rectifier potassium channel activity	1.61E-03
27	GO:0033743: peptide-methionine (R)-S-oxide reductase activity	1.61E-03
28	GO:0042802: identical protein binding	1.92E-03
29	GO:0052747: sinapyl alcohol dehydrogenase activity	2.19E-03
30	GO:0004674: protein serine/threonine kinase activity	2.89E-03
31	GO:0015112: nitrate transmembrane transporter activity	3.16E-03
32	GO:0004672: protein kinase activity	3.21E-03
33	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	3.54E-03
34	GO:0045551: cinnamyl-alcohol dehydrogenase activity	4.26E-03
35	GO:0015171: amino acid transmembrane transporter activity	4.35E-03
36	GO:0004022: alcohol dehydrogenase (NAD) activity	4.64E-03
37	GO:0004565: beta-galactosidase activity	4.64E-03
38	GO:0008266: poly(U) RNA binding	5.04E-03
39	GO:0102337: 3-oxo-cerotoyl-CoA synthase activity	5.88E-03
40	GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity	5.88E-03
41	GO:0102336: 3-oxo-arachidoyl-CoA synthase activity	5.88E-03
42	GO:0005528: FK506 binding	6.32E-03
43	GO:0005215: transporter activity	7.89E-03
44	GO:0030570: pectate lyase activity	8.18E-03
45	GO:0008810: cellulase activity	8.18E-03
46	GO:0005249: voltage-gated potassium channel activity	9.68E-03
47	GO:0030551: cyclic nucleotide binding	9.68E-03
48	GO:0046933: proton-transporting ATP synthase activity, rotational mechanism	1.02E-02
49	GO:0050662: coenzyme binding	1.07E-02
50	GO:0004872: receptor activity	1.13E-02
51	GO:0016762: xyloglucan:xyloglucosyl transferase activity	1.18E-02
52	GO:0042626: ATPase activity, coupled to transmembrane movement of substances	1.23E-02
53	GO:0004518: nuclease activity	1.24E-02
54	GO:0000156: phosphorelay response regulator activity	1.30E-02
55	GO:0005200: structural constituent of cytoskeleton	1.41E-02
56	GO:0016597: amino acid binding	1.47E-02
57	GO:0030247: polysaccharide binding	1.72E-02
58	GO:0016798: hydrolase activity, acting on glycosyl bonds	1.72E-02
59	GO:0050660: flavin adenine dinucleotide binding	1.73E-02
60	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	1.85E-02
61	GO:0016614: oxidoreductase activity, acting on CH-OH group of donors	2.05E-02
62	GO:0003993: acid phosphatase activity	2.26E-02
63	GO:0003924: GTPase activity	2.74E-02
64	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	2.93E-02
65	GO:0009055: electron carrier activity	2.94E-02
66	GO:0051287: NAD binding	3.01E-02
67	GO:0003690: double-stranded DNA binding	3.33E-02
68	GO:0016298: lipase activity	3.33E-02
69	GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups	3.74E-02
70	GO:0008289: lipid binding	3.81E-02
71	GO:0022857: transmembrane transporter activity	4.00E-02
72	GO:0004386: helicase activity	4.44E-02
73	GO:0016758: transferase activity, transferring hexosyl groups	4.80E-02
74	GO:0019843: rRNA binding	4.89E-02

Rank	GO Term	Adjusted P value
1	GO:0090577: RNA polymerase IV transcription factor complex	0.00E+00
2	GO:0031618: nuclear pericentric heterochromatin	0.00E+00
3	GO:0005886: plasma membrane	3.84E-05
4	GO:0048046: apoplast	1.08E-04
5	GO:0009515: granal stacked thylakoid	1.20E-04
6	GO:0005618: cell wall	1.42E-04
7	GO:0015630: microtubule cytoskeleton	6.57E-04
8	GO:0009534: chloroplast thylakoid	6.66E-04
9	GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1)	1.35E-03
10	GO:0009986: cell surface	1.89E-03
11	GO:0046658: anchored component of plasma membrane	2.02E-03
12	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	2.82E-03
13	GO:0008180: COP9 signalosome	2.82E-03
14	GO:0005576: extracellular region	2.92E-03
15	GO:0016021: integral component of membrane	4.38E-03
16	GO:0031225: anchored component of membrane	4.56E-03
17	GO:0005578: proteinaceous extracellular matrix	4.64E-03
18	GO:0000419: DNA-directed RNA polymerase V complex	5.88E-03
19	GO:0010287: plastoglobule	6.61E-03
20	GO:0009654: photosystem II oxygen evolving complex	6.76E-03
21	GO:0009543: chloroplast thylakoid lumen	6.98E-03
22	GO:0009505: plant-type cell wall	9.54E-03
23	GO:0019898: extrinsic component of membrane	1.13E-02
24	GO:0016020: membrane	1.26E-02
25	GO:0009579: thylakoid	1.38E-02
26	GO:0010319: stromule	1.41E-02
27	GO:0000151: ubiquitin ligase complex	1.85E-02
28	GO:0019005: SCF ubiquitin ligase complex	1.85E-02
29	GO:0009707: chloroplast outer membrane	1.85E-02
30	GO:0009535: chloroplast thylakoid membrane	2.28E-02
31	GO:0009506: plasmodesma	2.37E-02
32	GO:0043231: intracellular membrane-bounded organelle	3.02E-02
33	GO:0000502: proteasome complex	3.25E-02