co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G68820

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0010378: temperature compensation of the circadian clock	0.00E+00
2	GO:0005997: xylulose metabolic process	0.00E+00
3	GO:1903428: positive regulation of reactive oxygen species biosynthetic process	0.00E+00
4	GO:0071311: cellular response to acetate	0.00E+00
5	GO:0071260: cellular response to mechanical stimulus	0.00E+00
6	GO:0030328: prenylcysteine catabolic process	0.00E+00
7	GO:0042906: xanthine transport	0.00E+00
8	GO:0030327: prenylated protein catabolic process	0.00E+00
9	GO:0010219: regulation of vernalization response	0.00E+00
10	GO:0012502: induction of programmed cell death	0.00E+00
11	GO:0009409: response to cold	1.36E-06
12	GO:0009768: photosynthesis, light harvesting in photosystem I	3.87E-06
13	GO:0009645: response to low light intensity stimulus	4.27E-06
14	GO:0009817: defense response to fungus, incompatible interaction	4.31E-06
15	GO:0009416: response to light stimulus	4.72E-05
16	GO:0010600: regulation of auxin biosynthetic process	5.13E-05
17	GO:0018298: protein-chromophore linkage	7.70E-05
18	GO:0010218: response to far red light	9.23E-05
19	GO:0010244: response to low fluence blue light stimulus by blue low-fluence system	1.62E-04
20	GO:0042542: response to hydrogen peroxide	1.73E-04
21	GO:0009644: response to high light intensity	2.12E-04
22	GO:0009769: photosynthesis, light harvesting in photosystem II	2.13E-04
23	GO:0009415: response to water	2.69E-04
24	GO:0010928: regulation of auxin mediated signaling pathway	2.69E-04
25	GO:0009819: drought recovery	2.69E-04
26	GO:0015812: gamma-aminobutyric acid transport	2.77E-04
27	GO:0032958: inositol phosphate biosynthetic process	2.77E-04
28	GO:0006369: termination of RNA polymerase II transcription	2.77E-04
29	GO:1900060: negative regulation of ceramide biosynthetic process	2.77E-04
30	GO:1990641: response to iron ion starvation	2.77E-04
31	GO:1902265: abscisic acid homeostasis	2.77E-04
32	GO:0030003: cellular cation homeostasis	6.09E-04
33	GO:0090156: cellular sphingolipid homeostasis	6.09E-04
34	GO:0015914: phospholipid transport	6.09E-04
35	GO:0015720: allantoin transport	6.09E-04
36	GO:0048833: specification of floral organ number	6.09E-04
37	GO:0015857: uracil transport	6.09E-04
38	GO:0030259: lipid glycosylation	6.09E-04
39	GO:0006101: citrate metabolic process	6.09E-04
40	GO:0051170: nuclear import	6.09E-04
41	GO:0006816: calcium ion transport	6.38E-04
42	GO:0009737: response to abscisic acid	7.50E-04
43	GO:2000012: regulation of auxin polar transport	8.26E-04
44	GO:0071230: cellular response to amino acid stimulus	9.88E-04
45	GO:0016255: attachment of GPI anchor to protein	9.88E-04
46	GO:0071705: nitrogen compound transport	9.88E-04
47	GO:0030029: actin filament-based process	9.88E-04
48	GO:0042256: mature ribosome assembly	9.88E-04
49	GO:1902448: positive regulation of shade avoidance	9.88E-04
50	GO:0042344: indole glucosinolate catabolic process	9.88E-04
51	GO:0034976: response to endoplasmic reticulum stress	1.15E-03
52	GO:0007623: circadian rhythm	1.22E-03
53	GO:0010114: response to red light	1.39E-03
54	GO:0006874: cellular calcium ion homeostasis	1.40E-03
55	GO:1901332: negative regulation of lateral root development	1.41E-03
56	GO:0045338: farnesyl diphosphate metabolic process	1.41E-03
57	GO:0006020: inositol metabolic process	1.41E-03
58	GO:0032456: endocytic recycling	1.41E-03
59	GO:0010601: positive regulation of auxin biosynthetic process	1.41E-03
60	GO:0015749: monosaccharide transport	1.41E-03
61	GO:0009269: response to desiccation	1.54E-03
62	GO:0008643: carbohydrate transport	1.54E-03
63	GO:0010017: red or far-red light signaling pathway	1.68E-03
64	GO:0071215: cellular response to abscisic acid stimulus	1.83E-03
65	GO:0010508: positive regulation of autophagy	1.89E-03
66	GO:0006646: phosphatidylethanolamine biosynthetic process	1.89E-03
67	GO:0009687: abscisic acid metabolic process	1.89E-03
68	GO:0015743: malate transport	1.89E-03
69	GO:0051365: cellular response to potassium ion starvation	1.89E-03
70	GO:0048442: sepal development	1.89E-03
71	GO:0009765: photosynthesis, light harvesting	1.89E-03
72	GO:0022622: root system development	1.89E-03
73	GO:1901409: positive regulation of phosphorylation of RNA polymerase II C-terminal domain	1.89E-03
74	GO:0030104: water homeostasis	1.89E-03
75	GO:0009585: red, far-red light phototransduction	2.03E-03
76	GO:0006656: phosphatidylcholine biosynthetic process	2.41E-03
77	GO:0043097: pyrimidine nucleoside salvage	2.41E-03
78	GO:0097428: protein maturation by iron-sulfur cluster transfer	2.41E-03
79	GO:0000380: alternative mRNA splicing, via spliceosome	2.41E-03
80	GO:0048578: positive regulation of long-day photoperiodism, flowering	2.41E-03
81	GO:0006814: sodium ion transport	2.70E-03
82	GO:0006206: pyrimidine nucleobase metabolic process	2.98E-03
83	GO:0000741: karyogamy	2.98E-03
84	GO:0042732: D-xylose metabolic process	2.98E-03
85	GO:0080167: response to karrikin	3.29E-03
86	GO:0009861: jasmonic acid and ethylene-dependent systemic resistance	3.58E-03
87	GO:0045737: positive regulation of cyclin-dependent protein serine/threonine kinase activity	3.58E-03
88	GO:0045926: negative regulation of growth	3.58E-03
89	GO:0009738: abscisic acid-activated signaling pathway	3.66E-03
90	GO:0010286: heat acclimation	3.98E-03
91	GO:0015979: photosynthesis	4.03E-03
92	GO:0006979: response to oxidative stress	4.19E-03
93	GO:0006333: chromatin assembly or disassembly	4.23E-03
94	GO:0010038: response to metal ion	4.23E-03
95	GO:0010044: response to aluminum ion	4.23E-03
96	GO:0032880: regulation of protein localization	4.23E-03
97	GO:0010161: red light signaling pathway	4.23E-03
98	GO:0098869: cellular oxidant detoxification	4.23E-03
99	GO:0048437: floral organ development	4.23E-03
100	GO:0045892: negative regulation of transcription, DNA-templated	4.44E-03
101	GO:0006491: N-glycan processing	4.90E-03
102	GO:0009704: de-etiolation	4.90E-03
103	GO:0006102: isocitrate metabolic process	4.90E-03
104	GO:0009061: anaerobic respiration	4.90E-03
105	GO:0048573: photoperiodism, flowering	5.26E-03
106	GO:0010099: regulation of photomorphogenesis	5.62E-03
107	GO:0009827: plant-type cell wall modification	5.62E-03
108	GO:0001510: RNA methylation	5.62E-03
109	GO:0006457: protein folding	6.09E-03
110	GO:0007165: signal transduction	6.12E-03
111	GO:0000160: phosphorelay signal transduction system	6.13E-03
112	GO:0090333: regulation of stomatal closure	6.37E-03
113	GO:0046916: cellular transition metal ion homeostasis	6.37E-03
114	GO:0006098: pentose-phosphate shunt	6.37E-03
115	GO:0006811: ion transport	6.43E-03
116	GO:0009631: cold acclimation	6.75E-03
117	GO:0030042: actin filament depolymerization	7.15E-03
118	GO:0048354: mucilage biosynthetic process involved in seed coat development	7.15E-03
119	GO:0009637: response to blue light	7.40E-03
120	GO:0048441: petal development	7.97E-03
121	GO:0009641: shade avoidance	7.97E-03
122	GO:0009970: cellular response to sulfate starvation	7.97E-03
123	GO:0055062: phosphate ion homeostasis	7.97E-03
124	GO:0006995: cellular response to nitrogen starvation	7.97E-03
125	GO:0030148: sphingolipid biosynthetic process	8.82E-03
126	GO:0009682: induced systemic resistance	8.82E-03
127	GO:0052544: defense response by callose deposition in cell wall	8.82E-03
128	GO:0005975: carbohydrate metabolic process	9.32E-03
129	GO:0009640: photomorphogenesis	9.55E-03
130	GO:0016925: protein sumoylation	9.70E-03
131	GO:0009718: anthocyanin-containing compound biosynthetic process	1.06E-02
132	GO:0007034: vacuolar transport	1.16E-02
133	GO:0007015: actin filament organization	1.16E-02
134	GO:0000165: MAPK cascade	1.16E-02
135	GO:0009266: response to temperature stimulus	1.16E-02
136	GO:0048440: carpel development	1.16E-02
137	GO:0090351: seedling development	1.25E-02
138	GO:0010030: positive regulation of seed germination	1.25E-02
139	GO:0019853: L-ascorbic acid biosynthetic process	1.25E-02
140	GO:0051603: proteolysis involved in cellular protein catabolic process	1.34E-02
141	GO:0035556: intracellular signal transduction	1.54E-02
142	GO:0009695: jasmonic acid biosynthetic process	1.56E-02
143	GO:0016575: histone deacetylation	1.56E-02
144	GO:0044550: secondary metabolite biosynthetic process	1.63E-02
145	GO:0003333: amino acid transmembrane transport	1.67E-02
146	GO:0051260: protein homooligomerization	1.67E-02
147	GO:0048511: rhythmic process	1.67E-02
148	GO:0009651: response to salt stress	1.69E-02
149	GO:0019748: secondary metabolic process	1.78E-02
150	GO:0006012: galactose metabolic process	1.89E-02
151	GO:0009693: ethylene biosynthetic process	1.89E-02
152	GO:0019722: calcium-mediated signaling	2.01E-02
153	GO:0048443: stamen development	2.01E-02
154	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	2.13E-02
155	GO:0070417: cellular response to cold	2.13E-02
156	GO:0008284: positive regulation of cell proliferation	2.13E-02
157	GO:0034220: ion transmembrane transport	2.25E-02
158	GO:0000413: protein peptidyl-prolyl isomerization	2.25E-02
159	GO:0042631: cellular response to water deprivation	2.25E-02
160	GO:0000226: microtubule cytoskeleton organization	2.25E-02
161	GO:0010197: polar nucleus fusion	2.37E-02
162	GO:0046323: glucose import	2.37E-02
163	GO:0009958: positive gravitropism	2.37E-02
164	GO:0009408: response to heat	2.40E-02
165	GO:0009058: biosynthetic process	2.43E-02
166	GO:0042752: regulation of circadian rhythm	2.50E-02
167	GO:0008654: phospholipid biosynthetic process	2.63E-02
168	GO:0009556: microsporogenesis	2.63E-02
169	GO:0006635: fatty acid beta-oxidation	2.76E-02
170	GO:0048510: regulation of timing of transition from vegetative to reproductive phase	2.76E-02
171	GO:1901657: glycosyl compound metabolic process	3.02E-02
172	GO:0006914: autophagy	3.16E-02
173	GO:0019760: glucosinolate metabolic process	3.16E-02
174	GO:0010228: vegetative to reproductive phase transition of meristem	3.33E-02
175	GO:0010029: regulation of seed germination	3.73E-02
176	GO:0009617: response to bacterium	3.79E-02
177	GO:0010468: regulation of gene expression	3.79E-02
178	GO:0006950: response to stress	4.02E-02
179	GO:0015995: chlorophyll biosynthetic process	4.02E-02
180	GO:0042742: defense response to bacterium	4.02E-02
181	GO:0048481: plant ovule development	4.33E-02
182	GO:0010043: response to zinc ion	4.79E-02
183	GO:0048527: lateral root development	4.79E-02

Rank	GO Term	Adjusted P value
1	GO:0004567: beta-mannosidase activity	0.00E+00
2	GO:0005358: high-affinity hydrogen:glucose symporter activity	0.00E+00
3	GO:0015276: ligand-gated ion channel activity	0.00E+00
4	GO:0080081: 4-methylumbelliferyl-beta-D-glucopyranoside beta-glucosidase activity	0.00E+00
5	GO:0016428: tRNA (cytosine-5-)-methyltransferase activity	0.00E+00
6	GO:0047668: amygdalin beta-glucosidase activity	0.00E+00
7	GO:0050511: undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase activity	0.00E+00
8	GO:0080083: beta-gentiobiose beta-glucosidase activity	0.00E+00
9	GO:0005272: sodium channel activity	0.00E+00
10	GO:0030504: inorganic diphosphate transmembrane transporter activity	0.00E+00
11	GO:0042907: xanthine transmembrane transporter activity	0.00E+00
12	GO:0010349: L-galactose dehydrogenase activity	0.00E+00
13	GO:0009045: xylose isomerase activity	0.00E+00
14	GO:0001735: prenylcysteine oxidase activity	0.00E+00
15	GO:0080082: esculin beta-glucosidase activity	0.00E+00
16	GO:0031409: pigment binding	2.43E-06
17	GO:0005253: anion channel activity	5.13E-05
18	GO:0016168: chlorophyll binding	5.16E-05
19	GO:0015185: gamma-aminobutyric acid transmembrane transporter activity	2.77E-04
20	GO:0030275: LRR domain binding	2.77E-04
21	GO:0033857: diphosphoinositol-pentakisphosphate kinase activity	2.77E-04
22	GO:0009679: hexose:proton symporter activity	2.77E-04
23	GO:0000829: inositol heptakisphosphate kinase activity	2.77E-04
24	GO:0080079: cellobiose glucosidase activity	2.77E-04
25	GO:0008692: 3-hydroxybutyryl-CoA epimerase activity	2.77E-04
26	GO:0046870: cadmium ion binding	2.77E-04
27	GO:0008066: glutamate receptor activity	2.77E-04
28	GO:0004856: xylulokinase activity	2.77E-04
29	GO:0000828: inositol hexakisphosphate kinase activity	2.77E-04
30	GO:0047066: phospholipid-hydroperoxide glutathione peroxidase activity	2.77E-04
31	GO:0015180: L-alanine transmembrane transporter activity	6.09E-04
32	GO:0032791: lead ion binding	6.09E-04
33	GO:0005274: allantoin uptake transmembrane transporter activity	6.09E-04
34	GO:0004609: phosphatidylserine decarboxylase activity	6.09E-04
35	GO:0047216: inositol 3-alpha-galactosyltransferase activity	6.09E-04
36	GO:0003994: aconitate hydratase activity	6.09E-04
37	GO:0003857: 3-hydroxyacyl-CoA dehydrogenase activity	6.09E-04
38	GO:0004839: ubiquitin activating enzyme activity	6.09E-04
39	GO:0047158: sinapoylglucose-sinapoylglucose O-sinapoyltransferase activity	6.09E-04
40	GO:0005262: calcium channel activity	8.26E-04
41	GO:0004096: catalase activity	9.88E-04
42	GO:0019948: SUMO activating enzyme activity	9.88E-04
43	GO:0017150: tRNA dihydrouridine synthase activity	9.88E-04
44	GO:0004970: ionotropic glutamate receptor activity	1.04E-03
45	GO:0005217: intracellular ligand-gated ion channel activity	1.04E-03
46	GO:0005351: sugar:proton symporter activity	1.18E-03
47	GO:0030527: structural constituent of chromatin	1.41E-03
48	GO:0004165: dodecenoyl-CoA delta-isomerase activity	1.41E-03
49	GO:0004300: enoyl-CoA hydratase activity	1.41E-03
50	GO:0015189: L-lysine transmembrane transporter activity	1.41E-03
51	GO:0048027: mRNA 5'-UTR binding	1.41E-03
52	GO:0015181: arginine transmembrane transporter activity	1.41E-03
53	GO:0004707: MAP kinase activity	1.54E-03
54	GO:0008526: phosphatidylinositol transporter activity	1.89E-03
55	GO:0015210: uracil transmembrane transporter activity	1.89E-03
56	GO:0005313: L-glutamate transmembrane transporter activity	1.89E-03
57	GO:0016702: oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen	2.41E-03
58	GO:0010294: abscisic acid glucosyltransferase activity	2.41E-03
59	GO:0015145: monosaccharide transmembrane transporter activity	2.41E-03
60	GO:0008641: small protein activating enzyme activity	2.41E-03
61	GO:0016773: phosphotransferase activity, alcohol group as acceptor	2.41E-03
62	GO:0045300: acyl-[acyl-carrier-protein] desaturase activity	2.41E-03
63	GO:0005247: voltage-gated chloride channel activity	2.98E-03
64	GO:0004629: phospholipase C activity	2.98E-03
65	GO:0019137: thioglucosidase activity	2.98E-03
66	GO:0000293: ferric-chelate reductase activity	2.98E-03
67	GO:0000156: phosphorelay response regulator activity	3.52E-03
68	GO:0005261: cation channel activity	3.58E-03
69	GO:0004602: glutathione peroxidase activity	3.58E-03
70	GO:0004435: phosphatidylinositol phospholipase C activity	3.58E-03
71	GO:0004849: uridine kinase activity	3.58E-03
72	GO:0015140: malate transmembrane transporter activity	4.23E-03
73	GO:0004033: aldo-keto reductase (NADP) activity	4.90E-03
74	GO:0004525: ribonuclease III activity	4.90E-03
75	GO:0102483: scopolin beta-glucosidase activity	5.26E-03
76	GO:0015144: carbohydrate transmembrane transporter activity	5.33E-03
77	GO:0001104: RNA polymerase II transcription cofactor activity	5.62E-03
78	GO:0005267: potassium channel activity	5.62E-03
79	GO:0032041: NAD-dependent histone deacetylase activity (H3-K14 specific)	5.62E-03
80	GO:0009815: 1-aminocyclopropane-1-carboxylate oxidase activity	6.37E-03
81	GO:0000989: transcription factor activity, transcription factor binding	6.37E-03
82	GO:0008422: beta-glucosidase activity	8.08E-03
83	GO:0005315: inorganic phosphate transmembrane transporter activity	1.06E-02
84	GO:0004565: beta-galactosidase activity	1.06E-02
85	GO:0005509: calcium ion binding	1.15E-02
86	GO:0008083: growth factor activity	1.16E-02
87	GO:0046872: metal ion binding	1.24E-02
88	GO:0003712: transcription cofactor activity	1.25E-02
89	GO:0051536: iron-sulfur cluster binding	1.46E-02
90	GO:0004407: histone deacetylase activity	1.46E-02
91	GO:0051087: chaperone binding	1.56E-02
92	GO:0019706: protein-cysteine S-palmitoyltransferase activity	1.67E-02
93	GO:0008514: organic anion transmembrane transporter activity	2.01E-02
94	GO:0003756: protein disulfide isomerase activity	2.01E-02
95	GO:0016709: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen	2.03E-02
96	GO:0016538: cyclin-dependent protein serine/threonine kinase regulator activity	2.37E-02
97	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	2.37E-02
98	GO:0005515: protein binding	2.71E-02
99	GO:0004197: cysteine-type endopeptidase activity	2.89E-02
100	GO:0015297: antiporter activity	3.04E-02
101	GO:0005200: structural constituent of cytoskeleton	3.30E-02
102	GO:0030247: polysaccharide binding	4.02E-02
103	GO:0005096: GTPase activator activity	4.48E-02
104	GO:0004693: cyclin-dependent protein serine/threonine kinase activity	4.64E-02
105	GO:0050897: cobalt ion binding	4.79E-02

Rank	GO Term	Adjusted P value
1	GO:0030076: light-harvesting complex	1.88E-06
2	GO:0009522: photosystem I	1.65E-05
3	GO:0010287: plastoglobule	9.94E-05
4	GO:0016021: integral component of membrane	1.21E-04
5	GO:0035339: SPOTS complex	2.77E-04
6	GO:0009523: photosystem II	3.05E-04
7	GO:0005764: lysosome	9.28E-04
8	GO:0042765: GPI-anchor transamidase complex	9.88E-04
9	GO:0005777: peroxisome	1.34E-03
10	GO:0009517: PSII associated light-harvesting complex II	1.89E-03
11	GO:0070847: core mediator complex	2.98E-03
12	GO:0005851: eukaryotic translation initiation factor 2B complex	2.98E-03
13	GO:0034707: chloride channel complex	2.98E-03
14	GO:0000815: ESCRT III complex	3.58E-03
15	GO:0005886: plasma membrane	3.84E-03
16	GO:0016020: membrane	4.10E-03
17	GO:0009579: thylakoid	5.30E-03
18	GO:0000307: cyclin-dependent protein kinase holoenzyme complex	5.62E-03
19	GO:0031966: mitochondrial membrane	1.20E-02
20	GO:0042651: thylakoid membrane	1.56E-02
21	GO:0015629: actin cytoskeleton	1.89E-02
22	GO:0009534: chloroplast thylakoid	1.89E-02
23	GO:0005618: cell wall	2.38E-02
24	GO:0031965: nuclear membrane	2.63E-02
25	GO:0000785: chromatin	2.89E-02
26	GO:0016592: mediator complex	2.89E-02
27	GO:0009705: plant-type vacuole membrane	3.18E-02
28	GO:0005622: intracellular	3.33E-02
29	GO:0009506: plasmodesma	3.40E-02
30	GO:0005783: endoplasmic reticulum	3.41E-02
31	GO:0005615: extracellular space	3.56E-02
32	GO:0005773: vacuole	4.28E-02
33	GO:0000151: ubiquitin ligase complex	4.33E-02
34	GO:0000786: nucleosome	4.95E-02