GO Enrichment Analysis of Co-expressed Genes with
AT1G68540
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0006066: alcohol metabolic process | 0.00E+00 |
| 2 | GO:2001294: malonyl-CoA catabolic process | 0.00E+00 |
| 3 | GO:0042820: vitamin B6 catabolic process | 0.00E+00 |
| 4 | GO:0006399: tRNA metabolic process | 0.00E+00 |
| 5 | GO:0006780: uroporphyrinogen III biosynthetic process | 0.00E+00 |
| 6 | GO:0061635: regulation of protein complex stability | 0.00E+00 |
| 7 | GO:0046838: phosphorylated carbohydrate dephosphorylation | 0.00E+00 |
| 8 | GO:0042821: pyridoxal biosynthetic process | 0.00E+00 |
| 9 | GO:0035970: peptidyl-threonine dephosphorylation | 0.00E+00 |
| 10 | GO:0015979: photosynthesis | 2.06E-17 |
| 11 | GO:0010027: thylakoid membrane organization | 5.62E-10 |
| 12 | GO:0009773: photosynthetic electron transport in photosystem I | 3.03E-09 |
| 13 | GO:0010196: nonphotochemical quenching | 1.84E-08 |
| 14 | GO:0090391: granum assembly | 8.79E-06 |
| 15 | GO:0018298: protein-chromophore linkage | 4.48E-05 |
| 16 | GO:0031365: N-terminal protein amino acid modification | 5.85E-05 |
| 17 | GO:0006400: tRNA modification | 1.57E-04 |
| 18 | GO:0009443: pyridoxal 5'-phosphate salvage | 2.27E-04 |
| 19 | GO:1904966: positive regulation of vitamin E biosynthetic process | 2.27E-04 |
| 20 | GO:1904964: positive regulation of phytol biosynthetic process | 2.27E-04 |
| 21 | GO:0043686: co-translational protein modification | 2.27E-04 |
| 22 | GO:0071588: hydrogen peroxide mediated signaling pathway | 2.27E-04 |
| 23 | GO:0071482: cellular response to light stimulus | 2.48E-04 |
| 24 | GO:0009658: chloroplast organization | 2.86E-04 |
| 25 | GO:0015995: chlorophyll biosynthetic process | 4.63E-04 |
| 26 | GO:0009750: response to fructose | 4.83E-04 |
| 27 | GO:0034755: iron ion transmembrane transport | 5.05E-04 |
| 28 | GO:0010115: regulation of abscisic acid biosynthetic process | 5.05E-04 |
| 29 | GO:0030388: fructose 1,6-bisphosphate metabolic process | 5.05E-04 |
| 30 | GO:0010024: phytochromobilin biosynthetic process | 5.05E-04 |
| 31 | GO:0046741: transport of virus in host, tissue to tissue | 5.05E-04 |
| 32 | GO:1902326: positive regulation of chlorophyll biosynthetic process | 5.05E-04 |
| 33 | GO:0005983: starch catabolic process | 5.53E-04 |
| 34 | GO:0006094: gluconeogenesis | 6.27E-04 |
| 35 | GO:0006753: nucleoside phosphate metabolic process | 8.21E-04 |
| 36 | GO:0006954: inflammatory response | 8.21E-04 |
| 37 | GO:0071492: cellular response to UV-A | 8.21E-04 |
| 38 | GO:0006000: fructose metabolic process | 8.21E-04 |
| 39 | GO:0006788: heme oxidation | 8.21E-04 |
| 40 | GO:0009768: photosynthesis, light harvesting in photosystem I | 1.06E-03 |
| 41 | GO:0009644: response to high light intensity | 1.08E-03 |
| 42 | GO:0031408: oxylipin biosynthetic process | 1.17E-03 |
| 43 | GO:2001141: regulation of RNA biosynthetic process | 1.17E-03 |
| 44 | GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly | 1.17E-03 |
| 45 | GO:0006020: inositol metabolic process | 1.17E-03 |
| 46 | GO:0009152: purine ribonucleotide biosynthetic process | 1.17E-03 |
| 47 | GO:0046653: tetrahydrofolate metabolic process | 1.17E-03 |
| 48 | GO:0006810: transport | 1.51E-03 |
| 49 | GO:0006021: inositol biosynthetic process | 1.56E-03 |
| 50 | GO:0071486: cellular response to high light intensity | 1.56E-03 |
| 51 | GO:0045727: positive regulation of translation | 1.56E-03 |
| 52 | GO:0015994: chlorophyll metabolic process | 1.56E-03 |
| 53 | GO:0006564: L-serine biosynthetic process | 1.99E-03 |
| 54 | GO:0006461: protein complex assembly | 1.99E-03 |
| 55 | GO:0046855: inositol phosphate dephosphorylation | 2.45E-03 |
| 56 | GO:0010190: cytochrome b6f complex assembly | 2.45E-03 |
| 57 | GO:0006561: proline biosynthetic process | 2.45E-03 |
| 58 | GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway | 2.45E-03 |
| 59 | GO:0016554: cytidine to uridine editing | 2.45E-03 |
| 60 | GO:0010019: chloroplast-nucleus signaling pathway | 2.94E-03 |
| 61 | GO:0015937: coenzyme A biosynthetic process | 3.47E-03 |
| 62 | GO:0009645: response to low light intensity stimulus | 3.47E-03 |
| 63 | GO:0009395: phospholipid catabolic process | 3.47E-03 |
| 64 | GO:0055085: transmembrane transport | 3.54E-03 |
| 65 | GO:0006605: protein targeting | 4.02E-03 |
| 66 | GO:0009819: drought recovery | 4.02E-03 |
| 67 | GO:0008152: metabolic process | 4.45E-03 |
| 68 | GO:0032544: plastid translation | 4.60E-03 |
| 69 | GO:0017004: cytochrome complex assembly | 4.60E-03 |
| 70 | GO:0006002: fructose 6-phosphate metabolic process | 4.60E-03 |
| 71 | GO:0009657: plastid organization | 4.60E-03 |
| 72 | GO:0055114: oxidation-reduction process | 4.68E-03 |
| 73 | GO:0090305: nucleic acid phosphodiester bond hydrolysis | 5.22E-03 |
| 74 | GO:0034765: regulation of ion transmembrane transport | 5.22E-03 |
| 75 | GO:0000373: Group II intron splicing | 5.22E-03 |
| 76 | GO:0006098: pentose-phosphate shunt | 5.22E-03 |
| 77 | GO:0009637: response to blue light | 5.54E-03 |
| 78 | GO:0034599: cellular response to oxidative stress | 5.79E-03 |
| 79 | GO:0010205: photoinhibition | 5.85E-03 |
| 80 | GO:0006779: porphyrin-containing compound biosynthetic process | 5.85E-03 |
| 81 | GO:1900865: chloroplast RNA modification | 5.85E-03 |
| 82 | GO:0009688: abscisic acid biosynthetic process | 6.51E-03 |
| 83 | GO:0006782: protoporphyrinogen IX biosynthetic process | 6.51E-03 |
| 84 | GO:0010114: response to red light | 7.14E-03 |
| 85 | GO:0009073: aromatic amino acid family biosynthetic process | 7.20E-03 |
| 86 | GO:0043085: positive regulation of catalytic activity | 7.20E-03 |
| 87 | GO:0006879: cellular iron ion homeostasis | 7.20E-03 |
| 88 | GO:0006352: DNA-templated transcription, initiation | 7.20E-03 |
| 89 | GO:0006790: sulfur compound metabolic process | 7.92E-03 |
| 90 | GO:0009735: response to cytokinin | 8.00E-03 |
| 91 | GO:0010628: positive regulation of gene expression | 8.66E-03 |
| 92 | GO:0005986: sucrose biosynthetic process | 8.66E-03 |
| 93 | GO:0080167: response to karrikin | 1.01E-02 |
| 94 | GO:0046854: phosphatidylinositol phosphorylation | 1.02E-02 |
| 95 | GO:0006636: unsaturated fatty acid biosynthetic process | 1.10E-02 |
| 96 | GO:0019762: glucosinolate catabolic process | 1.10E-02 |
| 97 | GO:0009695: jasmonic acid biosynthetic process | 1.27E-02 |
| 98 | GO:0019953: sexual reproduction | 1.27E-02 |
| 99 | GO:0007017: microtubule-based process | 1.27E-02 |
| 100 | GO:0045454: cell redox homeostasis | 1.28E-02 |
| 101 | GO:0061077: chaperone-mediated protein folding | 1.36E-02 |
| 102 | GO:0006869: lipid transport | 1.43E-02 |
| 103 | GO:0016226: iron-sulfur cluster assembly | 1.45E-02 |
| 104 | GO:0030245: cellulose catabolic process | 1.45E-02 |
| 105 | GO:0032259: methylation | 1.58E-02 |
| 106 | GO:0009306: protein secretion | 1.64E-02 |
| 107 | GO:0009561: megagametogenesis | 1.64E-02 |
| 108 | GO:0042391: regulation of membrane potential | 1.83E-02 |
| 109 | GO:0042335: cuticle development | 1.83E-02 |
| 110 | GO:0006662: glycerol ether metabolic process | 1.93E-02 |
| 111 | GO:0010182: sugar mediated signaling pathway | 1.93E-02 |
| 112 | GO:0042744: hydrogen peroxide catabolic process | 1.97E-02 |
| 113 | GO:0048544: recognition of pollen | 2.03E-02 |
| 114 | GO:0000302: response to reactive oxygen species | 2.24E-02 |
| 115 | GO:0019761: glucosinolate biosynthetic process | 2.35E-02 |
| 116 | GO:0019760: glucosinolate metabolic process | 2.57E-02 |
| 117 | GO:0071805: potassium ion transmembrane transport | 2.68E-02 |
| 118 | GO:0051607: defense response to virus | 2.80E-02 |
| 119 | GO:0001666: response to hypoxia | 2.91E-02 |
| 120 | GO:0009615: response to virus | 2.91E-02 |
| 121 | GO:0016311: dephosphorylation | 3.40E-02 |
| 122 | GO:0000160: phosphorelay signal transduction system | 3.65E-02 |
| 123 | GO:0010218: response to far red light | 3.77E-02 |
| 124 | GO:0009631: cold acclimation | 3.90E-02 |
| 125 | GO:0009853: photorespiration | 4.17E-02 |
| 126 | GO:0051707: response to other organism | 4.98E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0009979: 16:0 monogalactosyldiacylglycerol desaturase activity | 0.00E+00 |
| 2 | GO:0004852: uroporphyrinogen-III synthase activity | 0.00E+00 |
| 3 | GO:0102193: protein-ribulosamine 3-kinase activity | 0.00E+00 |
| 4 | GO:0051738: xanthophyll binding | 0.00E+00 |
| 5 | GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity | 0.00E+00 |
| 6 | GO:0050236: pyridoxine:NADP 4-dehydrogenase activity | 0.00E+00 |
| 7 | GO:0046577: long-chain-alcohol oxidase activity | 0.00E+00 |
| 8 | GO:0010301: xanthoxin dehydrogenase activity | 0.00E+00 |
| 9 | GO:0047538: 2-carboxy-D-arabinitol-1-phosphatase activity | 0.00E+00 |
| 10 | GO:0050518: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity | 0.00E+00 |
| 11 | GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity | 0.00E+00 |
| 12 | GO:0016168: chlorophyll binding | 3.17E-08 |
| 13 | GO:0005528: FK506 binding | 1.64E-06 |
| 14 | GO:0022891: substrate-specific transmembrane transporter activity | 3.85E-06 |
| 15 | GO:0046872: metal ion binding | 7.81E-05 |
| 16 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 1.48E-04 |
| 17 | GO:0009055: electron carrier activity | 1.98E-04 |
| 18 | GO:0004033: aldo-keto reductase (NADP) activity | 2.00E-04 |
| 19 | GO:0042586: peptide deformylase activity | 2.27E-04 |
| 20 | GO:0010945: CoA pyrophosphatase activity | 2.27E-04 |
| 21 | GO:0004321: fatty-acyl-CoA synthase activity | 2.27E-04 |
| 22 | GO:0019203: carbohydrate phosphatase activity | 2.27E-04 |
| 23 | GO:0030794: (S)-coclaurine-N-methyltransferase activity | 2.27E-04 |
| 24 | GO:0050308: sugar-phosphatase activity | 2.27E-04 |
| 25 | GO:0016787: hydrolase activity | 3.47E-04 |
| 26 | GO:0008967: phosphoglycolate phosphatase activity | 5.05E-04 |
| 27 | GO:0016630: protochlorophyllide reductase activity | 5.05E-04 |
| 28 | GO:0047746: chlorophyllase activity | 5.05E-04 |
| 29 | GO:0004617: phosphoglycerate dehydrogenase activity | 5.05E-04 |
| 30 | GO:0052832: inositol monophosphate 3-phosphatase activity | 5.05E-04 |
| 31 | GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity | 5.05E-04 |
| 32 | GO:0008934: inositol monophosphate 1-phosphatase activity | 5.05E-04 |
| 33 | GO:0052833: inositol monophosphate 4-phosphatase activity | 5.05E-04 |
| 34 | GO:0016742: hydroxymethyl-, formyl- and related transferase activity | 8.21E-04 |
| 35 | GO:0070402: NADPH binding | 8.21E-04 |
| 36 | GO:0008864: formyltetrahydrofolate deformylase activity | 8.21E-04 |
| 37 | GO:0031409: pigment binding | 8.76E-04 |
| 38 | GO:0008893: guanosine-3',5'-bis(diphosphate) 3'-diphosphatase activity | 1.17E-03 |
| 39 | GO:0001872: (1->3)-beta-D-glucan binding | 1.17E-03 |
| 40 | GO:0004392: heme oxygenase (decyclizing) activity | 1.56E-03 |
| 41 | GO:0004659: prenyltransferase activity | 1.56E-03 |
| 42 | GO:0001053: plastid sigma factor activity | 1.56E-03 |
| 43 | GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor | 1.56E-03 |
| 44 | GO:0102490: 8-oxo-dGTP phosphohydrolase activity | 1.56E-03 |
| 45 | GO:0004045: aminoacyl-tRNA hydrolase activity | 1.56E-03 |
| 46 | GO:0016987: sigma factor activity | 1.56E-03 |
| 47 | GO:1990137: plant seed peroxidase activity | 1.56E-03 |
| 48 | GO:0043495: protein anchor | 1.56E-03 |
| 49 | GO:0003959: NADPH dehydrogenase activity | 1.99E-03 |
| 50 | GO:0016773: phosphotransferase activity, alcohol group as acceptor | 1.99E-03 |
| 51 | GO:0000210: NAD+ diphosphatase activity | 2.45E-03 |
| 52 | GO:0016688: L-ascorbate peroxidase activity | 2.45E-03 |
| 53 | GO:2001070: starch binding | 2.45E-03 |
| 54 | GO:0004332: fructose-bisphosphate aldolase activity | 2.45E-03 |
| 55 | GO:0004130: cytochrome-c peroxidase activity | 2.45E-03 |
| 56 | GO:0004723: calcium-dependent protein serine/threonine phosphatase activity | 2.94E-03 |
| 57 | GO:0005242: inward rectifier potassium channel activity | 2.94E-03 |
| 58 | GO:0051920: peroxiredoxin activity | 2.94E-03 |
| 59 | GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity | 2.94E-03 |
| 60 | GO:0016597: amino acid binding | 3.17E-03 |
| 61 | GO:0019899: enzyme binding | 3.47E-03 |
| 62 | GO:0008235: metalloexopeptidase activity | 3.47E-03 |
| 63 | GO:0016209: antioxidant activity | 4.02E-03 |
| 64 | GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water | 4.60E-03 |
| 65 | GO:0008138: protein tyrosine/serine/threonine phosphatase activity | 5.22E-03 |
| 66 | GO:0016207: 4-coumarate-CoA ligase activity | 5.22E-03 |
| 67 | GO:0005381: iron ion transmembrane transporter activity | 5.85E-03 |
| 68 | GO:0030234: enzyme regulator activity | 6.51E-03 |
| 69 | GO:0008047: enzyme activator activity | 6.51E-03 |
| 70 | GO:0005509: calcium ion binding | 6.96E-03 |
| 71 | GO:0004177: aminopeptidase activity | 7.20E-03 |
| 72 | GO:0015386: potassium:proton antiporter activity | 7.20E-03 |
| 73 | GO:0008168: methyltransferase activity | 7.35E-03 |
| 74 | GO:0016788: hydrolase activity, acting on ester bonds | 7.90E-03 |
| 75 | GO:0004022: alcohol dehydrogenase (NAD) activity | 8.66E-03 |
| 76 | GO:0031072: heat shock protein binding | 8.66E-03 |
| 77 | GO:0004565: beta-galactosidase activity | 8.66E-03 |
| 78 | GO:0008266: poly(U) RNA binding | 9.42E-03 |
| 79 | GO:0051536: iron-sulfur cluster binding | 1.19E-02 |
| 80 | GO:0015079: potassium ion transmembrane transporter activity | 1.27E-02 |
| 81 | GO:0043424: protein histidine kinase binding | 1.27E-02 |
| 82 | GO:0016491: oxidoreductase activity | 1.29E-02 |
| 83 | GO:0030246: carbohydrate binding | 1.44E-02 |
| 84 | GO:0008810: cellulase activity | 1.54E-02 |
| 85 | GO:0019843: rRNA binding | 1.73E-02 |
| 86 | GO:0047134: protein-disulfide reductase activity | 1.73E-02 |
| 87 | GO:0005249: voltage-gated potassium channel activity | 1.83E-02 |
| 88 | GO:0030551: cyclic nucleotide binding | 1.83E-02 |
| 89 | GO:0050662: coenzyme binding | 2.03E-02 |
| 90 | GO:0004791: thioredoxin-disulfide reductase activity | 2.03E-02 |
| 91 | GO:0048038: quinone binding | 2.24E-02 |
| 92 | GO:0004518: nuclease activity | 2.35E-02 |
| 93 | GO:0000156: phosphorelay response regulator activity | 2.46E-02 |
| 94 | GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor | 2.46E-02 |
| 95 | GO:0008289: lipid binding | 2.52E-02 |
| 96 | GO:0005200: structural constituent of cytoskeleton | 2.68E-02 |
| 97 | GO:0051213: dioxygenase activity | 2.91E-02 |
| 98 | GO:0042802: identical protein binding | 3.03E-02 |
| 99 | GO:0030247: polysaccharide binding | 3.27E-02 |
| 100 | GO:0004721: phosphoprotein phosphatase activity | 3.27E-02 |
| 101 | GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity | 3.52E-02 |
| 102 | GO:0004601: peroxidase activity | 3.68E-02 |
| 103 | GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors | 4.17E-02 |
| 104 | GO:0003993: acid phosphatase activity | 4.30E-02 |
| 105 | GO:0051539: 4 iron, 4 sulfur cluster binding | 4.57E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0009515: granal stacked thylakoid | 0.00E+00 |
| 2 | GO:0009575: chromoplast stroma | 0.00E+00 |
| 3 | GO:0009507: chloroplast | 2.69E-52 |
| 4 | GO:0009535: chloroplast thylakoid membrane | 9.35E-30 |
| 5 | GO:0009534: chloroplast thylakoid | 1.58E-16 |
| 6 | GO:0009570: chloroplast stroma | 2.61E-15 |
| 7 | GO:0009579: thylakoid | 5.46E-14 |
| 8 | GO:0009543: chloroplast thylakoid lumen | 4.17E-13 |
| 9 | GO:0009941: chloroplast envelope | 5.34E-11 |
| 10 | GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone) | 9.05E-08 |
| 11 | GO:0031977: thylakoid lumen | 2.38E-07 |
| 12 | GO:0009523: photosystem II | 2.97E-07 |
| 13 | GO:0042651: thylakoid membrane | 7.03E-05 |
| 14 | GO:0009654: photosystem II oxygen evolving complex | 7.03E-05 |
| 15 | GO:0019898: extrinsic component of membrane | 2.07E-04 |
| 16 | GO:0046658: anchored component of plasma membrane | 2.12E-04 |
| 17 | GO:0009782: photosystem I antenna complex | 2.27E-04 |
| 18 | GO:0031969: chloroplast membrane | 4.27E-04 |
| 19 | GO:0030095: chloroplast photosystem II | 7.06E-04 |
| 20 | GO:0030076: light-harvesting complex | 7.89E-04 |
| 21 | GO:0015630: microtubule cytoskeleton | 1.17E-03 |
| 22 | GO:0009517: PSII associated light-harvesting complex II | 1.56E-03 |
| 23 | GO:0010287: plastoglobule | 2.74E-03 |
| 24 | GO:0030529: intracellular ribonucleoprotein complex | 3.36E-03 |
| 25 | GO:0009533: chloroplast stromal thylakoid | 3.47E-03 |
| 26 | GO:0005811: lipid particle | 4.60E-03 |
| 27 | GO:0031225: anchored component of membrane | 5.08E-03 |
| 28 | GO:0000312: plastid small ribosomal subunit | 9.42E-03 |
| 29 | GO:0048046: apoplast | 1.08E-02 |
| 30 | GO:0009522: photosystem I | 2.03E-02 |
| 31 | GO:0005778: peroxisomal membrane | 2.68E-02 |
| 32 | GO:0010319: stromule | 2.68E-02 |
| 33 | GO:0016021: integral component of membrane | 3.49E-02 |