co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G67700

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0002184: cytoplasmic translational termination	0.00E+00
2	GO:0045176: apical protein localization	0.00E+00
3	GO:0033494: ferulate metabolic process	0.00E+00
4	GO:0090470: shoot organ boundary specification	0.00E+00
5	GO:0016553: base conversion or substitution editing	0.00E+00
6	GO:0061635: regulation of protein complex stability	0.00E+00
7	GO:0015805: S-adenosyl-L-methionine transport	0.00E+00
8	GO:0035970: peptidyl-threonine dephosphorylation	0.00E+00
9	GO:0042493: response to drug	0.00E+00
10	GO:0006399: tRNA metabolic process	0.00E+00
11	GO:0009773: photosynthetic electron transport in photosystem I	5.59E-09
12	GO:0010027: thylakoid membrane organization	5.33E-08
13	GO:0010207: photosystem II assembly	1.24E-06
14	GO:0042549: photosystem II stabilization	1.35E-06
15	GO:0015979: photosynthesis	2.07E-06
16	GO:0032544: plastid translation	8.38E-06
17	GO:0009735: response to cytokinin	2.86E-05
18	GO:0009658: chloroplast organization	6.75E-05
19	GO:0042254: ribosome biogenesis	7.08E-05
20	GO:0006412: translation	1.11E-04
21	GO:0010196: nonphotochemical quenching	1.99E-04
22	GO:0071588: hydrogen peroxide mediated signaling pathway	2.65E-04
23	GO:0010729: positive regulation of hydrogen peroxide biosynthetic process	2.65E-04
24	GO:0043489: RNA stabilization	2.65E-04
25	GO:1904966: positive regulation of vitamin E biosynthetic process	2.65E-04
26	GO:1902025: nitrate import	2.65E-04
27	GO:0000481: maturation of 5S rRNA	2.65E-04
28	GO:1904964: positive regulation of phytol biosynthetic process	2.65E-04
29	GO:0033481: galacturonate biosynthetic process	2.65E-04
30	GO:0006106: fumarate metabolic process	2.65E-04
31	GO:0090548: response to nitrate starvation	2.65E-04
32	GO:1902458: positive regulation of stomatal opening	2.65E-04
33	GO:0034337: RNA folding	2.65E-04
34	GO:0071482: cellular response to light stimulus	3.10E-04
35	GO:0010205: photoinhibition	4.44E-04
36	GO:0043255: regulation of carbohydrate biosynthetic process	5.83E-04
37	GO:0010115: regulation of abscisic acid biosynthetic process	5.83E-04
38	GO:1902326: positive regulation of chlorophyll biosynthetic process	5.83E-04
39	GO:0034755: iron ion transmembrane transport	5.83E-04
40	GO:0001736: establishment of planar polarity	5.83E-04
41	GO:1903426: regulation of reactive oxygen species biosynthetic process	5.83E-04
42	GO:0015995: chlorophyll biosynthetic process	6.13E-04
43	GO:0009631: cold acclimation	8.37E-04
44	GO:0010143: cutin biosynthetic process	8.73E-04
45	GO:0009416: response to light stimulus	8.99E-04
46	GO:0090391: granum assembly	9.47E-04
47	GO:0006636: unsaturated fatty acid biosynthetic process	1.08E-03
48	GO:0009152: purine ribonucleotide biosynthetic process	1.35E-03
49	GO:0046653: tetrahydrofolate metabolic process	1.35E-03
50	GO:0009800: cinnamic acid biosynthetic process	1.35E-03
51	GO:0009650: UV protection	1.35E-03
52	GO:0080170: hydrogen peroxide transmembrane transport	1.35E-03
53	GO:0051016: barbed-end actin filament capping	1.35E-03
54	GO:1901332: negative regulation of lateral root development	1.35E-03
55	GO:2001141: regulation of RNA biosynthetic process	1.35E-03
56	GO:0010371: regulation of gibberellin biosynthetic process	1.35E-03
57	GO:0071484: cellular response to light intensity	1.35E-03
58	GO:0045727: positive regulation of translation	1.81E-03
59	GO:0015994: chlorophyll metabolic process	1.81E-03
60	GO:2000122: negative regulation of stomatal complex development	1.81E-03
61	GO:0030104: water homeostasis	1.81E-03
62	GO:0010021: amylopectin biosynthetic process	1.81E-03
63	GO:0010037: response to carbon dioxide	1.81E-03
64	GO:0010109: regulation of photosynthesis	1.81E-03
65	GO:0015976: carbon utilization	1.81E-03
66	GO:0009306: protein secretion	1.87E-03
67	GO:0009409: response to cold	2.08E-03
68	GO:0042335: cuticle development	2.19E-03
69	GO:0000413: protein peptidyl-prolyl isomerization	2.19E-03
70	GO:0006564: L-serine biosynthetic process	2.31E-03
71	GO:0010236: plastoquinone biosynthetic process	2.31E-03
72	GO:0045038: protein import into chloroplast thylakoid membrane	2.31E-03
73	GO:0006461: protein complex assembly	2.31E-03
74	GO:0010182: sugar mediated signaling pathway	2.36E-03
75	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	2.85E-03
76	GO:0000470: maturation of LSU-rRNA	2.85E-03
77	GO:0009913: epidermal cell differentiation	2.85E-03
78	GO:0006086: acetyl-CoA biosynthetic process from pyruvate	2.85E-03
79	GO:0010337: regulation of salicylic acid metabolic process	2.85E-03
80	GO:0006559: L-phenylalanine catabolic process	2.85E-03
81	GO:0006561: proline biosynthetic process	2.85E-03
82	GO:0048827: phyllome development	2.85E-03
83	GO:0010189: vitamin E biosynthetic process	3.43E-03
84	GO:0010019: chloroplast-nucleus signaling pathway	3.43E-03
85	GO:0071805: potassium ion transmembrane transport	3.73E-03
86	GO:0009395: phospholipid catabolic process	4.04E-03
87	GO:0009772: photosynthetic electron transport in photosystem II	4.04E-03
88	GO:0051693: actin filament capping	4.04E-03
89	GO:1900057: positive regulation of leaf senescence	4.04E-03
90	GO:0050829: defense response to Gram-negative bacterium	4.04E-03
91	GO:0006400: tRNA modification	4.04E-03
92	GO:0042128: nitrate assimilation	4.68E-03
93	GO:0008610: lipid biosynthetic process	4.69E-03
94	GO:0030091: protein repair	4.69E-03
95	GO:0006605: protein targeting	4.69E-03
96	GO:0032508: DNA duplex unwinding	4.69E-03
97	GO:2000070: regulation of response to water deprivation	4.69E-03
98	GO:0006633: fatty acid biosynthetic process	5.22E-03
99	GO:0015996: chlorophyll catabolic process	5.37E-03
100	GO:0009827: plant-type cell wall modification	5.37E-03
101	GO:0007186: G-protein coupled receptor signaling pathway	5.37E-03
102	GO:0009657: plastid organization	5.37E-03
103	GO:0017004: cytochrome complex assembly	5.37E-03
104	GO:0009817: defense response to fungus, incompatible interaction	5.46E-03
105	GO:0030244: cellulose biosynthetic process	5.46E-03
106	GO:0018298: protein-chromophore linkage	5.46E-03
107	GO:0010311: lateral root formation	5.74E-03
108	GO:0009451: RNA modification	6.06E-03
109	GO:0010206: photosystem II repair	6.09E-03
110	GO:0034765: regulation of ion transmembrane transport	6.09E-03
111	GO:0000902: cell morphogenesis	6.09E-03
112	GO:0009637: response to blue light	6.93E-03
113	GO:0034599: cellular response to oxidative stress	7.24E-03
114	GO:0006032: chitin catabolic process	7.61E-03
115	GO:0009688: abscisic acid biosynthetic process	7.61E-03
116	GO:0048829: root cap development	7.61E-03
117	GO:0000038: very long-chain fatty acid metabolic process	8.42E-03
118	GO:0043085: positive regulation of catalytic activity	8.42E-03
119	GO:0008285: negative regulation of cell proliferation	8.42E-03
120	GO:0006879: cellular iron ion homeostasis	8.42E-03
121	GO:0006352: DNA-templated transcription, initiation	8.42E-03
122	GO:0009750: response to fructose	8.42E-03
123	GO:0048765: root hair cell differentiation	8.42E-03
124	GO:0010114: response to red light	8.94E-03
125	GO:0016024: CDP-diacylglycerol biosynthetic process	9.26E-03
126	GO:0045037: protein import into chloroplast stroma	9.26E-03
127	GO:0010628: positive regulation of gene expression	1.01E-02
128	GO:0006108: malate metabolic process	1.01E-02
129	GO:0006006: glucose metabolic process	1.01E-02
130	GO:0010229: inflorescence development	1.01E-02
131	GO:0030036: actin cytoskeleton organization	1.01E-02
132	GO:0009718: anthocyanin-containing compound biosynthetic process	1.01E-02
133	GO:0009725: response to hormone	1.01E-02
134	GO:0006855: drug transmembrane transport	1.04E-02
135	GO:0007015: actin filament organization	1.10E-02
136	GO:0019253: reductive pentose-phosphate cycle	1.10E-02
137	GO:0010540: basipetal auxin transport	1.10E-02
138	GO:0042742: defense response to bacterium	1.18E-02
139	GO:0009225: nucleotide-sugar metabolic process	1.20E-02
140	GO:0009825: multidimensional cell growth	1.20E-02
141	GO:0010167: response to nitrate	1.20E-02
142	GO:0071732: cellular response to nitric oxide	1.20E-02
143	GO:0010053: root epidermal cell differentiation	1.20E-02
144	GO:0006364: rRNA processing	1.21E-02
145	GO:0006813: potassium ion transport	1.21E-02
146	GO:0000027: ribosomal large subunit assembly	1.39E-02
147	GO:0006487: protein N-linked glycosylation	1.39E-02
148	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	1.41E-02
149	GO:0006096: glycolytic process	1.43E-02
150	GO:0007017: microtubule-based process	1.49E-02
151	GO:0009768: photosynthesis, light harvesting in photosystem I	1.49E-02
152	GO:0010073: meristem maintenance	1.49E-02
153	GO:0031408: oxylipin biosynthetic process	1.59E-02
154	GO:0003333: amino acid transmembrane transport	1.59E-02
155	GO:0016998: cell wall macromolecule catabolic process	1.59E-02
156	GO:0035428: hexose transmembrane transport	1.70E-02
157	GO:0009411: response to UV	1.81E-02
158	GO:0071369: cellular response to ethylene stimulus	1.81E-02
159	GO:0010227: floral organ abscission	1.81E-02
160	GO:0016042: lipid catabolic process	2.13E-02
161	GO:0042391: regulation of membrane potential	2.15E-02
162	GO:0034220: ion transmembrane transport	2.15E-02
163	GO:0009408: response to heat	2.21E-02
164	GO:0009958: positive gravitropism	2.26E-02
165	GO:0045489: pectin biosynthetic process	2.26E-02
166	GO:0006662: glycerol ether metabolic process	2.26E-02
167	GO:0046323: glucose import	2.26E-02
168	GO:0015986: ATP synthesis coupled proton transport	2.38E-02
169	GO:0042744: hydrogen peroxide catabolic process	2.46E-02
170	GO:0048825: cotyledon development	2.51E-02
171	GO:0019252: starch biosynthetic process	2.51E-02
172	GO:0009790: embryo development	2.52E-02
173	GO:0071554: cell wall organization or biogenesis	2.63E-02
174	GO:0000302: response to reactive oxygen species	2.63E-02
175	GO:0002229: defense response to oomycetes	2.63E-02
176	GO:0071281: cellular response to iron ion	2.88E-02
177	GO:0009734: auxin-activated signaling pathway	3.38E-02
178	GO:0009911: positive regulation of flower development	3.42E-02
179	GO:0009834: plant-type secondary cell wall biogenesis	4.43E-02
180	GO:0009407: toxin catabolic process	4.43E-02
181	GO:0010218: response to far red light	4.43E-02
182	GO:0010119: regulation of stomatal movement	4.58E-02
183	GO:0007568: aging	4.58E-02
184	GO:0006865: amino acid transport	4.73E-02
185	GO:0009793: embryo development ending in seed dormancy	4.83E-02
186	GO:0009853: photorespiration	4.88E-02
187	GO:0045087: innate immune response	4.88E-02

Rank	GO Term	Adjusted P value
1	GO:0010301: xanthoxin dehydrogenase activity	0.00E+00
2	GO:0009979: 16:0 monogalactosyldiacylglycerol desaturase activity	0.00E+00
3	GO:0102550: 2-methyl-6-geranylgeranyl-1,4-benzoquinol methyltransferase activity	0.00E+00
4	GO:0050518: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity	0.00E+00
5	GO:0008942: nitrite reductase [NAD(P)H] activity	0.00E+00
6	GO:0019843: rRNA binding	1.14E-09
7	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	3.98E-08
8	GO:0005528: FK506 binding	4.91E-08
9	GO:0016851: magnesium chelatase activity	2.63E-05
10	GO:0003735: structural constituent of ribosome	1.51E-04
11	GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity	2.65E-04
12	GO:0045485: omega-6 fatty acid desaturase activity	2.65E-04
13	GO:0051741: 2-methyl-6-phytyl-1,4-benzoquinone methyltransferase activity	2.65E-04
14	GO:0004333: fumarate hydratase activity	2.65E-04
15	GO:0016788: hydrolase activity, acting on ester bonds	4.49E-04
16	GO:0033201: alpha-1,4-glucan synthase activity	5.83E-04
17	GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity	5.83E-04
18	GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity	5.83E-04
19	GO:0047746: chlorophyllase activity	5.83E-04
20	GO:0004617: phosphoglycerate dehydrogenase activity	5.83E-04
21	GO:0008266: poly(U) RNA binding	8.73E-04
22	GO:0004373: glycogen (starch) synthase activity	9.47E-04
23	GO:0050734: hydroxycinnamoyltransferase activity	9.47E-04
24	GO:0045548: phenylalanine ammonia-lyase activity	9.47E-04
25	GO:0016742: hydroxymethyl-, formyl- and related transferase activity	9.47E-04
26	GO:0008864: formyltetrahydrofolate deformylase activity	9.47E-04
27	GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	9.47E-04
28	GO:0015079: potassium ion transmembrane transporter activity	1.32E-03
29	GO:0003830: beta-1,4-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity	1.35E-03
30	GO:0043023: ribosomal large subunit binding	1.35E-03
31	GO:0008097: 5S rRNA binding	1.35E-03
32	GO:0004739: pyruvate dehydrogenase (acetyl-transferring) activity	1.81E-03
33	GO:0016987: sigma factor activity	1.81E-03
34	GO:0010328: auxin influx transmembrane transporter activity	1.81E-03
35	GO:0009011: starch synthase activity	1.81E-03
36	GO:0050378: UDP-glucuronate 4-epimerase activity	1.81E-03
37	GO:0043495: protein anchor	1.81E-03
38	GO:0042277: peptide binding	1.81E-03
39	GO:0004659: prenyltransferase activity	1.81E-03
40	GO:0001053: plastid sigma factor activity	1.81E-03
41	GO:0010011: auxin binding	1.81E-03
42	GO:0004040: amidase activity	2.31E-03
43	GO:0004130: cytochrome-c peroxidase activity	2.85E-03
44	GO:0004366: glycerol-3-phosphate O-acyltransferase activity	2.85E-03
45	GO:0016688: L-ascorbate peroxidase activity	2.85E-03
46	GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity	2.85E-03
47	GO:0033743: peptide-methionine (R)-S-oxide reductase activity	3.43E-03
48	GO:0004723: calcium-dependent protein serine/threonine phosphatase activity	3.43E-03
49	GO:0005242: inward rectifier potassium channel activity	3.43E-03
50	GO:0016413: O-acetyltransferase activity	3.96E-03
51	GO:0019899: enzyme binding	4.04E-03
52	GO:0016168: chlorophyll binding	4.43E-03
53	GO:0043022: ribosome binding	4.69E-03
54	GO:0004033: aldo-keto reductase (NADP) activity	4.69E-03
55	GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water	5.37E-03
56	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	5.46E-03
57	GO:0005381: iron ion transmembrane transporter activity	6.83E-03
58	GO:0008047: enzyme activator activity	7.61E-03
59	GO:0004568: chitinase activity	7.61E-03
60	GO:0042802: identical protein binding	7.98E-03
61	GO:0015386: potassium:proton antiporter activity	8.42E-03
62	GO:0004565: beta-galactosidase activity	1.01E-02
63	GO:0004022: alcohol dehydrogenase (NAD) activity	1.01E-02
64	GO:0004089: carbonate dehydratase activity	1.01E-02
65	GO:0031072: heat shock protein binding	1.01E-02
66	GO:0051287: NAD binding	1.08E-02
67	GO:0102336: 3-oxo-arachidoyl-CoA synthase activity	1.29E-02
68	GO:0102337: 3-oxo-cerotoyl-CoA synthase activity	1.29E-02
69	GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity	1.29E-02
70	GO:0031409: pigment binding	1.29E-02
71	GO:0052689: carboxylic ester hydrolase activity	1.53E-02
72	GO:0004176: ATP-dependent peptidase activity	1.59E-02
73	GO:0016746: transferase activity, transferring acyl groups	1.78E-02
74	GO:0004871: signal transducer activity	1.80E-02
75	GO:0030570: pectate lyase activity	1.81E-02
76	GO:0022891: substrate-specific transmembrane transporter activity	1.81E-02
77	GO:0047134: protein-disulfide reductase activity	2.03E-02
78	GO:0030551: cyclic nucleotide binding	2.15E-02
79	GO:0008080: N-acetyltransferase activity	2.26E-02
80	GO:0046933: proton-transporting ATP synthase activity, rotational mechanism	2.26E-02
81	GO:0030276: clathrin binding	2.26E-02
82	GO:0003729: mRNA binding	2.33E-02
83	GO:0005355: glucose transmembrane transporter activity	2.38E-02
84	GO:0050662: coenzyme binding	2.38E-02
85	GO:0004791: thioredoxin-disulfide reductase activity	2.38E-02
86	GO:0004872: receptor activity	2.51E-02
87	GO:0004518: nuclease activity	2.76E-02
88	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	2.88E-02
89	GO:0051015: actin filament binding	2.88E-02
90	GO:0016791: phosphatase activity	3.02E-02
91	GO:0008237: metallopeptidase activity	3.15E-02
92	GO:0005200: structural constituent of cytoskeleton	3.15E-02
93	GO:0016597: amino acid binding	3.28E-02
94	GO:0015250: water channel activity	3.42E-02
95	GO:0008375: acetylglucosaminyltransferase activity	3.70E-02
96	GO:0009931: calcium-dependent protein serine/threonine kinase activity	3.70E-02
97	GO:0042626: ATPase activity, coupled to transmembrane movement of substances	3.78E-02
98	GO:0004721: phosphoprotein phosphatase activity	3.84E-02
99	GO:0030247: polysaccharide binding	3.84E-02
100	GO:0004683: calmodulin-dependent protein kinase activity	3.84E-02
101	GO:0008757: S-adenosylmethionine-dependent methyltransferase activity	3.98E-02
102	GO:0015238: drug transmembrane transporter activity	4.28E-02
103	GO:0004222: metalloendopeptidase activity	4.43E-02
104	GO:0008168: methyltransferase activity	4.43E-02

Rank	GO Term	Adjusted P value
1	GO:0010240: plastid pyruvate dehydrogenase complex	0.00E+00
2	GO:0009507: chloroplast	7.56E-41
3	GO:0009941: chloroplast envelope	2.07E-24
4	GO:0009570: chloroplast stroma	3.25E-22
5	GO:0009535: chloroplast thylakoid membrane	6.78E-22
6	GO:0009579: thylakoid	1.24E-19
7	GO:0009534: chloroplast thylakoid	1.12E-15
8	GO:0009543: chloroplast thylakoid lumen	4.33E-14
9	GO:0031977: thylakoid lumen	1.66E-08
10	GO:0005840: ribosome	2.53E-07
11	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	1.17E-05
12	GO:0010007: magnesium chelatase complex	1.17E-05
13	GO:0043674: columella	2.65E-04
14	GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex	2.65E-04
15	GO:0009515: granal stacked thylakoid	2.65E-04
16	GO:0045239: tricarboxylic acid cycle enzyme complex	2.65E-04
17	GO:0009523: photosystem II	2.80E-04
18	GO:0010319: stromule	4.29E-04
19	GO:0008290: F-actin capping protein complex	5.83E-04
20	GO:0031969: chloroplast membrane	6.39E-04
21	GO:0030095: chloroplast photosystem II	8.73E-04
22	GO:0009528: plastid inner membrane	9.47E-04
23	GO:0042651: thylakoid membrane	1.32E-03
24	GO:0015630: microtubule cytoskeleton	1.35E-03
25	GO:0016020: membrane	1.59E-03
26	GO:0009527: plastid outer membrane	1.81E-03
27	GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1)	2.85E-03
28	GO:0009706: chloroplast inner membrane	2.93E-03
29	GO:0010287: plastoglobule	3.64E-03
30	GO:0009533: chloroplast stromal thylakoid	4.04E-03
31	GO:0042807: central vacuole	4.04E-03
32	GO:0009986: cell surface	4.04E-03
33	GO:0016021: integral component of membrane	4.30E-03
34	GO:0009501: amyloplast	4.69E-03
35	GO:0009536: plastid	5.41E-03
36	GO:0008180: COP9 signalosome	6.09E-03
37	GO:0048046: apoplast	6.71E-03
38	GO:0005884: actin filament	8.42E-03
39	GO:0032040: small-subunit processome	9.26E-03
40	GO:0030076: light-harvesting complex	1.20E-02
41	GO:0009654: photosystem II oxygen evolving complex	1.49E-02
42	GO:0009532: plastid stroma	1.59E-02
43	GO:0030136: clathrin-coated vesicle	2.03E-02
44	GO:0005770: late endosome	2.26E-02
45	GO:0009522: photosystem I	2.38E-02
46	GO:0019898: extrinsic component of membrane	2.51E-02
47	GO:0032580: Golgi cisterna membrane	3.02E-02
48	GO:0030529: intracellular ribonucleoprotein complex	3.42E-02
49	GO:0019005: SCF ubiquitin ligase complex	4.13E-02
50	GO:0009707: chloroplast outer membrane	4.13E-02
51	GO:0005886: plasma membrane	4.14E-02
52	GO:0015934: large ribosomal subunit	4.58E-02
53	GO:0005618: cell wall	4.97E-02