co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G66540

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:1903508: positive regulation of nucleic acid-templated transcription	0.00E+00
2	GO:1902171: regulation of tocopherol cyclase activity	0.00E+00
3	GO:0048575: short-day photoperiodism, flowering	2.46E-05
4	GO:0009637: response to blue light	3.56E-05
5	GO:0009640: photomorphogenesis	4.81E-05
6	GO:2000306: positive regulation of photomorphogenesis	5.40E-05
7	GO:0045962: positive regulation of development, heterochronic	9.04E-05
8	GO:0051510: regulation of unidimensional cell growth	1.32E-04
9	GO:1900056: negative regulation of leaf senescence	1.32E-04
10	GO:0050821: protein stabilization	1.54E-04
11	GO:0010100: negative regulation of photomorphogenesis	1.78E-04
12	GO:0009827: plant-type cell wall modification	1.78E-04
13	GO:0010380: regulation of chlorophyll biosynthetic process	2.27E-04
14	GO:0009658: chloroplast organization	2.86E-04
15	GO:2000028: regulation of photoperiodism, flowering	3.33E-04
16	GO:0018107: peptidyl-threonine phosphorylation	3.33E-04
17	GO:0010017: red or far-red light signaling pathway	5.39E-04
18	GO:0009741: response to brassinosteroid	7.00E-04
19	GO:0009791: post-embryonic development	7.68E-04
20	GO:0015995: chlorophyll biosynthetic process	1.13E-03
21	GO:0010218: response to far red light	1.28E-03
22	GO:0009910: negative regulation of flower development	1.32E-03
23	GO:0010114: response to red light	1.66E-03
24	GO:0009965: leaf morphogenesis	1.79E-03
25	GO:0006855: drug transmembrane transport	1.84E-03
26	GO:0006468: protein phosphorylation	1.99E-03
27	GO:0009585: red, far-red light phototransduction	2.02E-03
28	GO:0009909: regulation of flower development	2.17E-03
29	GO:0006355: regulation of transcription, DNA-templated	2.36E-03
30	GO:0018105: peptidyl-serine phosphorylation	2.61E-03
31	GO:0009742: brassinosteroid mediated signaling pathway	2.66E-03
32	GO:0009826: unidimensional cell growth	4.86E-03
33	GO:0006351: transcription, DNA-templated	5.53E-03
34	GO:0048366: leaf development	5.58E-03
35	GO:0044550: secondary metabolite biosynthetic process	6.13E-03
36	GO:0006629: lipid metabolic process	7.58E-03
37	GO:0009873: ethylene-activated signaling pathway	9.06E-03
38	GO:0009416: response to light stimulus	1.13E-02
39	GO:0035556: intracellular signal transduction	1.18E-02
40	GO:0045893: positive regulation of transcription, DNA-templated	1.25E-02
41	GO:0030154: cell differentiation	1.99E-02
42	GO:0007165: signal transduction	3.16E-02
43	GO:0006508: proteolysis	4.17E-02

Rank	GO Term	Adjusted P value
1	GO:0010277: chlorophyllide a oxygenase [overall] activity	2.46E-05
2	GO:0004672: protein kinase activity	2.46E-04
3	GO:0004871: signal transducer activity	4.43E-04
4	GO:0003700: transcription factor activity, sequence-specific DNA binding	1.10E-03
5	GO:0008236: serine-type peptidase activity	1.16E-03
6	GO:0015238: drug transmembrane transporter activity	1.24E-03
7	GO:0005506: iron ion binding	1.73E-03
8	GO:0044212: transcription regulatory region DNA binding	1.75E-03
9	GO:0051537: 2 iron, 2 sulfur cluster binding	1.75E-03
10	GO:0016298: lipase activity	2.07E-03
11	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	3.03E-03
12	GO:0004252: serine-type endopeptidase activity	3.20E-03
13	GO:0015297: antiporter activity	3.59E-03
14	GO:0042802: identical protein binding	4.36E-03
15	GO:0016709: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen	6.91E-03
16	GO:0004674: protein serine/threonine kinase activity	8.49E-03
17	GO:0005524: ATP binding	1.02E-02
18	GO:0005215: transporter activity	2.01E-02
19	GO:0020037: heme binding	2.59E-02
20	GO:0003677: DNA binding	2.89E-02
21	GO:0016301: kinase activity	2.92E-02
22	GO:0016787: hydrolase activity	3.22E-02
23	GO:0008270: zinc ion binding	4.39E-02

Rank	GO Term	Adjusted P value
1	GO:0016605: PML body	2.46E-05
2	GO:0016604: nuclear body	2.27E-04
3	GO:0042651: thylakoid membrane	4.78E-04
4	GO:0016607: nuclear speck	2.31E-03
5	GO:0005834: heterotrimeric G-protein complex	2.36E-03
6	GO:0009706: chloroplast inner membrane	2.56E-03
7	GO:0010287: plastoglobule	2.87E-03
8	GO:0080008: Cul4-RING E3 ubiquitin ligase complex	5.32E-03
9	GO:0005622: intracellular	1.70E-02
10	GO:0016020: membrane	2.31E-02
11	GO:0009535: chloroplast thylakoid membrane	3.32E-02
12	GO:0016021: integral component of membrane	4.96E-02