co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G65540

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0017126: nucleologenesis	0.00E+00
2	GO:0007160: cell-matrix adhesion	0.00E+00
3	GO:0006903: vesicle targeting	0.00E+00
4	GO:0010636: positive regulation of mitochondrial fusion	0.00E+00
5	GO:2000630: positive regulation of miRNA metabolic process	0.00E+00
6	GO:0080056: petal vascular tissue pattern formation	0.00E+00
7	GO:0048312: intracellular distribution of mitochondria	0.00E+00
8	GO:0080057: sepal vascular tissue pattern formation	0.00E+00
9	GO:0032264: IMP salvage	0.00E+00
10	GO:0070478: nuclear-transcribed mRNA catabolic process, 3'-5' exonucleolytic nonsense-mediated decay	0.00E+00
11	GO:2000636: positive regulation of primary miRNA processing	0.00E+00
12	GO:0000478: endonucleolytic cleavage involved in rRNA processing	0.00E+00
13	GO:0016070: RNA metabolic process	4.00E-06
14	GO:0060321: acceptance of pollen	1.40E-05
15	GO:0048455: stamen formation	3.50E-05
16	GO:0009168: purine ribonucleoside monophosphate biosynthetic process	3.50E-05
17	GO:0019673: GDP-mannose metabolic process	3.50E-05
18	GO:0055071: manganese ion homeostasis	3.50E-05
19	GO:0034620: cellular response to unfolded protein	3.50E-05
20	GO:0031338: regulation of vesicle fusion	3.50E-05
21	GO:0006886: intracellular protein transport	4.86E-05
22	GO:0060149: negative regulation of posttranscriptional gene silencing	8.78E-05
23	GO:0051788: response to misfolded protein	8.78E-05
24	GO:0010501: RNA secondary structure unwinding	1.48E-04
25	GO:0090630: activation of GTPase activity	1.52E-04
26	GO:0042351: 'de novo' GDP-L-fucose biosynthetic process	1.52E-04
27	GO:0043207: response to external biotic stimulus	2.25E-04
28	GO:0019048: modulation by virus of host morphology or physiology	2.25E-04
29	GO:0006612: protein targeting to membrane	2.25E-04
30	GO:0006893: Golgi to plasma membrane transport	2.25E-04
31	GO:0031936: negative regulation of chromatin silencing	2.25E-04
32	GO:0051601: exocyst localization	2.25E-04
33	GO:0034052: positive regulation of plant-type hypersensitive response	3.89E-04
34	GO:0006751: glutathione catabolic process	4.78E-04
35	GO:0043248: proteasome assembly	4.78E-04
36	GO:0006828: manganese ion transport	4.78E-04
37	GO:0009423: chorismate biosynthetic process	5.70E-04
38	GO:0033962: cytoplasmic mRNA processing body assembly	5.70E-04
39	GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	5.70E-04
40	GO:0006887: exocytosis	5.72E-04
41	GO:0048528: post-embryonic root development	6.66E-04
42	GO:0080111: DNA demethylation	6.66E-04
43	GO:0006397: mRNA processing	7.31E-04
44	GO:0009846: pollen germination	7.69E-04
45	GO:0010093: specification of floral organ identity	8.71E-04
46	GO:0006417: regulation of translation	9.06E-04
47	GO:0048354: mucilage biosynthetic process involved in seed coat development	1.09E-03
48	GO:0006816: calcium ion transport	1.32E-03
49	GO:0006913: nucleocytoplasmic transport	1.32E-03
50	GO:0009073: aromatic amino acid family biosynthetic process	1.32E-03
51	GO:0010588: cotyledon vascular tissue pattern formation	1.57E-03
52	GO:0034605: cellular response to heat	1.70E-03
53	GO:0046854: phosphatidylinositol phosphorylation	1.84E-03
54	GO:0009969: xyloglucan biosynthetic process	1.84E-03
55	GO:0080188: RNA-directed DNA methylation	1.84E-03
56	GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process	2.17E-03
57	GO:0006825: copper ion transport	2.26E-03
58	GO:0051302: regulation of cell division	2.26E-03
59	GO:0035428: hexose transmembrane transport	2.56E-03
60	GO:0070417: cellular response to cold	3.03E-03
61	GO:0051028: mRNA transport	3.03E-03
62	GO:0009860: pollen tube growth	3.21E-03
63	GO:0046323: glucose import	3.36E-03
64	GO:0010305: leaf vascular tissue pattern formation	3.36E-03
65	GO:0048366: leaf development	3.51E-03
66	GO:0016032: viral process	4.06E-03
67	GO:0030163: protein catabolic process	4.24E-03
68	GO:0006904: vesicle docking involved in exocytosis	4.60E-03
69	GO:0010029: regulation of seed germination	5.18E-03
70	GO:0006974: cellular response to DNA damage stimulus	5.38E-03
71	GO:0006810: transport	5.56E-03
72	GO:0006888: ER to Golgi vesicle-mediated transport	5.58E-03
73	GO:0048364: root development	5.67E-03
74	GO:0048767: root hair elongation	6.19E-03
75	GO:0006499: N-terminal protein myristoylation	6.40E-03
76	GO:0010119: regulation of stomatal movement	6.61E-03
77	GO:0009744: response to sucrose	8.41E-03
78	GO:0000209: protein polyubiquitination	8.65E-03
79	GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process	9.61E-03
80	GO:0006364: rRNA processing	1.04E-02
81	GO:0006096: glycolytic process	1.17E-02
82	GO:0048367: shoot system development	1.19E-02
83	GO:0009626: plant-type hypersensitive response	1.22E-02
84	GO:0009624: response to nematode	1.33E-02
85	GO:0000398: mRNA splicing, via spliceosome	1.47E-02
86	GO:0009845: seed germination	1.65E-02
87	GO:0009790: embryo development	1.74E-02
88	GO:0010150: leaf senescence	1.96E-02
89	GO:0009617: response to bacterium	2.22E-02
90	GO:0045944: positive regulation of transcription from RNA polymerase II promoter	2.53E-02
91	GO:0009826: unidimensional cell growth	2.60E-02
92	GO:0042254: ribosome biogenesis	2.71E-02
93	GO:0009723: response to ethylene	2.96E-02
94	GO:0046777: protein autophosphorylation	3.27E-02
95	GO:0006869: lipid transport	3.78E-02
96	GO:0009408: response to heat	4.11E-02
97	GO:0009737: response to abscisic acid	4.16E-02
98	GO:0008152: metabolic process	4.41E-02
99	GO:0009793: embryo development ending in seed dormancy	4.52E-02
100	GO:0009873: ethylene-activated signaling pathway	4.93E-02

Rank	GO Term	Adjusted P value
1	GO:0017168: 5-oxoprolinase (ATP-hydrolyzing) activity	0.00E+00
2	GO:0003876: AMP deaminase activity	0.00E+00
3	GO:0015410: manganese-transporting ATPase activity	0.00E+00
4	GO:0003729: mRNA binding	7.18E-08
5	GO:0004004: ATP-dependent RNA helicase activity	1.12E-05
6	GO:0017151: DEAD/H-box RNA helicase binding	3.50E-05
7	GO:0008446: GDP-mannose 4,6-dehydratase activity	3.50E-05
8	GO:0003849: 3-deoxy-7-phosphoheptulonate synthase activity	8.78E-05
9	GO:0008026: ATP-dependent helicase activity	8.88E-05
10	GO:0019829: cation-transporting ATPase activity	1.52E-04
11	GO:0070181: small ribosomal subunit rRNA binding	1.52E-04
12	GO:0003723: RNA binding	1.89E-04
13	GO:0005524: ATP binding	2.23E-04
14	GO:0004742: dihydrolipoyllysine-residue acetyltransferase activity	2.25E-04
15	GO:0001653: peptide receptor activity	2.25E-04
16	GO:0004576: oligosaccharyl transferase activity	3.05E-04
17	GO:0017137: Rab GTPase binding	3.89E-04
18	GO:0031593: polyubiquitin binding	4.78E-04
19	GO:0008143: poly(A) binding	6.66E-04
20	GO:0005337: nucleoside transmembrane transporter activity	7.68E-04
21	GO:0003724: RNA helicase activity	8.71E-04
22	GO:0005375: copper ion transmembrane transporter activity	8.71E-04
23	GO:0004430: 1-phosphatidylinositol 4-kinase activity	8.71E-04
24	GO:0016887: ATPase activity	1.19E-03
25	GO:0005388: calcium-transporting ATPase activity	1.57E-03
26	GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism	1.57E-03
27	GO:0051087: chaperone binding	2.26E-03
28	GO:0043424: protein histidine kinase binding	2.26E-03
29	GO:0004176: ATP-dependent peptidase activity	2.41E-03
30	GO:0030276: clathrin binding	3.36E-03
31	GO:0005355: glucose transmembrane transporter activity	3.53E-03
32	GO:0005515: protein binding	4.26E-03
33	GO:0008237: metallopeptidase activity	4.60E-03
34	GO:0005096: GTPase activator activity	6.19E-03
35	GO:0004222: metalloendopeptidase activity	6.40E-03
36	GO:0008422: beta-glucosidase activity	7.49E-03
37	GO:0000149: SNARE binding	7.49E-03
38	GO:0042393: histone binding	7.72E-03
39	GO:0005198: structural molecule activity	9.12E-03
40	GO:0015171: amino acid transmembrane transporter activity	1.11E-02
41	GO:0016746: transferase activity, transferring acyl groups	1.36E-02
42	GO:0005516: calmodulin binding	1.45E-02
43	GO:0015144: carbohydrate transmembrane transporter activity	1.77E-02
44	GO:0005351: sugar:proton symporter activity	1.93E-02
45	GO:0003676: nucleic acid binding	2.05E-02
46	GO:0005215: transporter activity	2.17E-02
47	GO:0042626: ATPase activity, coupled to transmembrane movement of substances	2.32E-02
48	GO:0003682: chromatin binding	2.78E-02
49	GO:0061630: ubiquitin protein ligase activity	3.23E-02

Rank	GO Term	Adjusted P value
1	GO:0008305: integrin complex	0.00E+00
2	GO:0055087: Ski complex	0.00E+00
3	GO:0010494: cytoplasmic stress granule	1.78E-05
4	GO:0005829: cytosol	5.78E-05
5	GO:0045254: pyruvate dehydrogenase complex	8.78E-05
6	GO:0000145: exocyst	2.16E-04
7	GO:0030127: COPII vesicle coat	4.78E-04
8	GO:0009506: plasmodesma	6.50E-04
9	GO:0033116: endoplasmic reticulum-Golgi intermediate compartment membrane	6.66E-04
10	GO:0005783: endoplasmic reticulum	6.76E-04
11	GO:0005856: cytoskeleton	6.92E-04
12	GO:0015030: Cajal body	1.09E-03
13	GO:0008540: proteasome regulatory particle, base subcomplex	1.09E-03
14	GO:0012505: endomembrane system	1.12E-03
15	GO:0005794: Golgi apparatus	1.26E-03
16	GO:0032040: small-subunit processome	1.44E-03
17	GO:0031307: integral component of mitochondrial outer membrane	1.44E-03
18	GO:0009524: phragmoplast	1.50E-03
19	GO:0005774: vacuolar membrane	3.73E-03
20	GO:0000932: P-body	4.99E-03
21	GO:0000139: Golgi membrane	5.01E-03
22	GO:0005730: nucleolus	6.65E-03
23	GO:0031902: late endosome membrane	7.95E-03
24	GO:0000502: proteasome complex	1.04E-02
25	GO:0005681: spliceosomal complex	1.17E-02
26	GO:0016607: nuclear speck	1.19E-02
27	GO:0005654: nucleoplasm	1.53E-02
28	GO:0005802: trans-Golgi network	1.55E-02
29	GO:0005622: intracellular	1.72E-02
30	GO:0005768: endosome	1.76E-02
31	GO:0005759: mitochondrial matrix	1.83E-02
32	GO:0009705: plant-type vacuole membrane	1.96E-02
33	GO:0005618: cell wall	1.96E-02
34	GO:0005789: endoplasmic reticulum membrane	2.99E-02
35	GO:0016020: membrane	3.50E-02
36	GO:0043231: intracellular membrane-bounded organelle	4.41E-02